Wall clock time and date at job start Sat Apr 11 2020 06:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47378 * 2 1 4 4 C 1.32991 * 120.00337 * 123.48132 * 3 2 1 5 5 C 1.50698 * 119.99926 * 6.61650 * 4 3 2 6 6 C 1.47101 * 120.00362 * 186.34394 * 4 3 2 7 7 O 1.21617 * 119.99534 * 352.70454 * 6 4 3 8 8 N 1.34776 * 120.00189 * 172.71180 * 6 4 3 9 9 C 1.46502 * 119.99975 * 353.70841 * 8 6 4 10 10 C 1.46505 * 119.99922 * 173.71650 * 8 6 4 11 11 C 1.53001 * 109.47034 * 96.14578 * 10 8 6 12 12 H 1.08993 * 112.96512 * 66.09509 * 11 10 8 13 13 C 1.53947 * 113.77009 * 294.41677 * 11 10 8 14 14 C 1.53945 * 86.28893 * 222.09273 * 13 11 10 15 15 N 1.47578 * 86.11728 * 23.60878 * 14 13 11 16 16 C 1.34775 * 134.49653 * 155.36220 * 15 14 13 17 17 O 1.21278 * 120.00432 * 184.98192 * 16 15 14 18 18 C 1.50703 * 119.99709 * 4.97898 * 16 15 14 19 19 S 1.81000 * 109.47190 * 179.97438 * 18 16 15 20 20 C 1.76201 * 100.00023 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00071 * 0.02562 * 20 19 18 22 22 C 1.38804 * 119.99777 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00215 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99906 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46984 * 359.97438 * 24 22 20 26 26 H 1.48490 * 109.47407 * 119.99520 * 24 22 20 27 27 H 1.48505 * 109.46921 * 239.99857 * 24 22 20 28 28 H 1.08995 * 109.46990 * 59.99947 * 1 2 3 29 29 H 1.09006 * 109.46747 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46940 * 300.00104 * 1 2 3 31 31 H 1.09004 * 109.47359 * 240.00127 * 2 1 3 32 32 H 1.09003 * 109.47579 * 120.00188 * 2 1 3 33 33 H 1.08003 * 119.99766 * 303.48489 * 3 2 1 34 34 H 1.08998 * 109.47231 * 266.97650 * 5 4 3 35 35 H 1.09002 * 109.46963 * 26.97556 * 5 4 3 36 36 H 1.09001 * 109.47572 * 146.97224 * 5 4 3 37 37 H 1.09008 * 109.46597 * 85.42893 * 9 8 6 38 38 H 1.08991 * 109.47415 * 205.43035 * 9 8 6 39 39 H 1.09001 * 109.47130 * 325.43470 * 9 8 6 40 40 H 1.09001 * 109.46636 * 216.14497 * 10 8 6 41 41 H 1.08999 * 109.47115 * 336.14566 * 10 8 6 42 42 H 1.09006 * 113.74087 * 336.43995 * 13 11 10 43 43 H 1.09004 * 113.74032 * 107.64161 * 13 11 10 44 44 H 1.09004 * 113.76570 * 137.90338 * 14 13 11 45 45 H 1.08993 * 113.77225 * 269.19058 * 14 13 11 46 46 H 1.08997 * 109.47436 * 300.00298 * 18 16 15 47 47 H 1.09003 * 109.47029 * 60.00230 * 18 16 15 48 48 H 0.96992 * 120.00187 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8531 1.8359 0.9606 5 6 3.3992 0.8517 1.9626 6 6 3.2326 3.2548 1.0415 7 8 2.9055 4.0231 0.1572 8 7 3.9428 3.7035 2.0954 9 6 4.2187 2.8127 3.2254 10 6 4.4388 5.0819 2.1112 11 6 3.4627 5.9663 2.8896 12 1 3.4134 5.7150 3.9491 13 6 2.0834 6.1064 2.2204 14 6 2.1627 7.5967 2.5984 15 7 3.6262 7.4089 2.6248 16 6 4.6864 8.2264 2.4696 17 8 5.8089 7.7676 2.4547 18 6 4.4769 9.7107 2.3145 19 16 6.0800 10.5300 2.1276 20 6 5.5518 12.2036 1.9706 21 1 4.4994 12.4434 2.0063 22 6 6.4884 13.2139 1.8011 23 7 7.7712 12.9218 1.7582 24 14 5.9286 14.9883 1.6355 25 1 4.4470 15.0496 1.7167 26 1 6.5187 15.7980 2.7315 27 1 6.3748 15.5279 0.3259 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.7259 2.1019 -0.7801 34 1 2.7532 0.8303 2.8402 35 1 3.4356 -0.1411 1.5140 36 1 4.4040 1.1537 2.2582 37 1 5.1123 2.2250 3.0149 38 1 4.3779 3.4063 4.1255 39 1 3.3712 2.1440 3.3762 40 1 5.4170 5.1105 2.5911 41 1 4.5250 5.4487 1.0884 42 1 2.0966 5.9249 1.1457 43 1 1.2895 5.5635 2.7334 44 1 1.8201 8.2683 1.8112 45 1 1.7297 7.8266 3.5719 46 1 3.8660 9.9012 1.4321 47 1 3.9709 10.1005 3.1977 48 1 8.4257 13.6278 1.6401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001684061693.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:14 Heat of formation + Delta-G solvation = 5.170079 kcal Electronic energy + Delta-G solvation = -27100.034622 eV Core-core repulsion = 23284.216331 eV Total energy + Delta-G solvation = -3815.818291 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.78230 -39.72101 -37.35933 -36.51446 -35.92061 -32.51351 -32.40870 -30.65141 -29.23410 -28.15312 -27.83938 -26.32093 -25.45668 -24.66801 -23.31392 -21.82286 -20.47783 -18.91387 -18.61335 -17.65945 -16.86070 -16.77626 -16.57868 -16.17802 -15.44820 -15.28730 -14.79978 -14.77207 -14.50820 -14.28139 -14.14628 -13.88966 -13.67233 -13.56890 -13.35779 -12.88387 -12.84894 -12.67509 -12.47368 -12.36794 -12.29698 -11.90844 -11.77389 -11.68877 -11.47206 -11.36885 -11.05357 -11.02007 -10.99811 -10.80030 -10.73336 -9.96940 -9.78546 -9.42024 -9.27239 -9.05380 -8.89691 -8.43003 -8.20481 -6.47450 -6.19685 -3.89853 1.06904 2.51452 2.98769 3.02370 3.13696 3.23139 3.27919 3.32886 3.61762 4.14795 4.22412 4.37282 4.47563 4.61674 4.65370 4.74877 4.76571 4.82243 4.84833 4.98677 5.01973 5.05096 5.13647 5.15574 5.21292 5.29134 5.31594 5.33874 5.44711 5.45879 5.48452 5.55986 5.58889 5.60352 5.70511 5.72491 5.86278 5.92958 6.05285 6.10413 6.15119 6.19473 6.22305 6.40548 7.16679 7.62170 7.90681 7.98519 8.37788 8.60188 9.25702 10.87875 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026867 B = 0.001977 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.930035 B =14157.362549 C =14458.283384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.071 4.071 4 C -0.186 4.186 5 C -0.139 4.139 6 C 0.554 3.446 7 O -0.536 6.536 8 N -0.608 5.608 9 C 0.059 3.941 10 C 0.116 3.884 11 C 0.122 3.878 12 H 0.088 0.912 13 C -0.147 4.147 14 C 0.103 3.897 15 N -0.643 5.643 16 C 0.556 3.444 17 O -0.516 6.516 18 C -0.145 4.145 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.126 0.874 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.813 -28.247 2.758 32.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.091 4.091 4 C -0.189 4.189 5 C -0.195 4.195 6 C 0.344 3.656 7 O -0.414 6.414 8 N -0.341 5.341 9 C -0.083 4.083 10 C -0.007 4.007 11 C 0.017 3.983 12 H 0.106 0.894 13 C -0.185 4.185 14 C -0.020 4.020 15 N -0.383 5.383 16 C 0.345 3.655 17 O -0.391 6.391 18 C -0.296 4.296 19 S 0.166 5.834 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.144 0.856 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.125 0.875 43 H 0.093 0.907 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.919 -28.285 2.241 31.604 hybrid contribution -1.570 1.841 0.112 2.422 sum -15.489 -26.444 2.353 30.737 Atomic orbital electron populations 1.21686 0.94324 1.01983 1.02431 1.20885 0.96623 0.93684 1.03382 1.23593 0.92550 0.97301 0.95642 1.21367 1.03121 0.93529 1.00926 1.21702 1.02278 0.97797 0.97694 1.18480 0.77559 0.88152 0.81429 1.90784 1.53924 1.57544 1.39107 1.47609 1.54442 1.12531 1.19482 1.22735 1.01956 0.94840 0.88771 1.21606 0.96648 0.79498 1.02955 1.23057 0.94621 0.81667 0.98936 0.89427 1.23677 0.95964 0.95474 1.03346 1.23100 0.80004 0.97416 1.01518 1.50117 1.06310 1.08417 1.73407 1.20060 0.82936 0.87575 0.74903 1.90688 1.22441 1.76736 1.49203 1.23478 1.07933 0.93458 1.04685 1.85363 1.00642 1.02360 1.95057 1.22909 0.95652 0.91955 1.57701 0.90896 1.24995 0.94513 0.99494 0.94615 1.70027 1.00321 1.33403 1.46557 0.86111 0.78780 0.82636 0.77936 1.19618 1.20567 1.20554 0.92300 0.92170 0.92453 0.90320 0.90345 0.85588 0.90741 0.91464 0.89342 0.91781 0.91270 0.89150 0.89368 0.88766 0.87547 0.90667 0.89897 0.90007 0.89400 0.89403 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.90 37.16 0.37 -0.31 16 2 C -0.11 -0.55 6.03 -27.88 -0.17 -0.71 16 3 C -0.07 -0.55 9.08 -36.13 -0.33 -0.88 16 4 C -0.19 -1.55 5.87 -102.85 -0.60 -2.15 16 5 C -0.14 -0.69 7.20 36.00 0.26 -0.43 16 6 C 0.55 6.40 7.27 -12.67 -0.09 6.31 16 7 O -0.54 -8.14 13.92 5.26 0.07 -8.06 16 8 N -0.61 -6.24 2.79 -182.97 -0.51 -6.75 16 9 C 0.06 0.37 8.71 59.85 0.52 0.89 16 10 C 0.12 1.53 4.77 -4.04 -0.02 1.51 16 11 C 0.12 1.52 4.53 -66.86 -0.30 1.21 16 12 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 13 C -0.15 -1.62 7.24 -25.81 -0.19 -1.80 16 14 C 0.10 1.18 8.61 -2.98 -0.03 1.16 16 15 N -0.64 -9.99 3.49 -171.21 -0.60 -10.59 16 16 C 0.56 11.29 7.99 -10.98 -0.09 11.20 16 17 O -0.52 -12.20 15.87 5.56 0.09 -12.11 16 18 C -0.15 -3.14 5.91 36.01 0.21 -2.93 16 19 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 20 C -0.53 -15.60 9.50 30.94 0.29 -15.31 16 21 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.60 13.22 55.49 0.73 -25.87 16 24 Si 0.92 21.82 29.55 -169.99 -5.02 16.80 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.32 5.58 -51.93 -0.29 0.03 16 33 H 0.13 1.16 7.51 -52.48 -0.39 0.76 16 34 H 0.07 0.26 6.73 -51.93 -0.35 -0.09 16 35 H 0.07 0.27 6.21 -51.93 -0.32 -0.05 16 36 H 0.09 0.42 4.54 -51.93 -0.24 0.18 16 37 H 0.06 0.34 6.47 -51.92 -0.34 0.00 16 38 H 0.07 0.39 8.04 -51.93 -0.42 -0.02 16 39 H 0.09 0.40 4.50 -51.93 -0.23 0.16 16 40 H 0.09 1.23 8.04 -51.93 -0.42 0.81 16 41 H 0.09 1.55 7.33 -51.93 -0.38 1.17 16 42 H 0.11 1.42 6.38 -51.93 -0.33 1.09 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 47 H 0.09 1.78 8.14 -51.91 -0.42 1.35 16 48 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 397.72 15.07 5.99 5.99 Total: -1.00 -36.92 397.72 -9.19 -46.11 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -7.48 Total: -1.39 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -0.26 Total: -0.21 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: -0.37 Total: -43.20 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: 0.16 Total: -20.17 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.92 -9.19 -46.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001684061693.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.278 kcal (2) G-P(sol) polarization free energy of solvation -36.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds