Wall clock time and date at job start Sat Apr 11 2020 06:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47378 * 2 1 4 4 C 1.32991 * 120.00337 * 123.48132 * 3 2 1 5 5 C 1.50698 * 119.99926 * 6.61650 * 4 3 2 6 6 C 1.47101 * 120.00362 * 186.34394 * 4 3 2 7 7 O 1.21617 * 119.99534 * 352.70454 * 6 4 3 8 8 N 1.34776 * 120.00189 * 172.71180 * 6 4 3 9 9 C 1.46502 * 119.99975 * 353.70841 * 8 6 4 10 10 C 1.46505 * 119.99922 * 173.71650 * 8 6 4 11 11 C 1.53001 * 109.47034 * 96.14578 * 10 8 6 12 12 H 1.08993 * 112.96512 * 66.09509 * 11 10 8 13 13 C 1.53947 * 113.77009 * 294.41677 * 11 10 8 14 14 C 1.53945 * 86.28893 * 222.09273 * 13 11 10 15 15 N 1.47578 * 86.11728 * 23.60878 * 14 13 11 16 16 C 1.34775 * 134.49653 * 155.36220 * 15 14 13 17 17 O 1.21278 * 120.00432 * 184.98192 * 16 15 14 18 18 C 1.50703 * 119.99709 * 4.97898 * 16 15 14 19 19 S 1.81000 * 109.47190 * 179.97438 * 18 16 15 20 20 C 1.76201 * 100.00023 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00071 * 0.02562 * 20 19 18 22 22 C 1.38804 * 119.99777 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00215 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99906 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46984 * 359.97438 * 24 22 20 26 26 H 1.48490 * 109.47407 * 119.99520 * 24 22 20 27 27 H 1.48505 * 109.46921 * 239.99857 * 24 22 20 28 28 H 1.08995 * 109.46990 * 59.99947 * 1 2 3 29 29 H 1.09006 * 109.46747 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46940 * 300.00104 * 1 2 3 31 31 H 1.09004 * 109.47359 * 240.00127 * 2 1 3 32 32 H 1.09003 * 109.47579 * 120.00188 * 2 1 3 33 33 H 1.08003 * 119.99766 * 303.48489 * 3 2 1 34 34 H 1.08998 * 109.47231 * 266.97650 * 5 4 3 35 35 H 1.09002 * 109.46963 * 26.97556 * 5 4 3 36 36 H 1.09001 * 109.47572 * 146.97224 * 5 4 3 37 37 H 1.09008 * 109.46597 * 85.42893 * 9 8 6 38 38 H 1.08991 * 109.47415 * 205.43035 * 9 8 6 39 39 H 1.09001 * 109.47130 * 325.43470 * 9 8 6 40 40 H 1.09001 * 109.46636 * 216.14497 * 10 8 6 41 41 H 1.08999 * 109.47115 * 336.14566 * 10 8 6 42 42 H 1.09006 * 113.74087 * 336.43995 * 13 11 10 43 43 H 1.09004 * 113.74032 * 107.64161 * 13 11 10 44 44 H 1.09004 * 113.76570 * 137.90338 * 14 13 11 45 45 H 1.08993 * 113.77225 * 269.19058 * 14 13 11 46 46 H 1.08997 * 109.47436 * 300.00298 * 18 16 15 47 47 H 1.09003 * 109.47029 * 60.00230 * 18 16 15 48 48 H 0.96992 * 120.00187 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8531 1.8359 0.9606 5 6 3.3992 0.8517 1.9626 6 6 3.2326 3.2548 1.0415 7 8 2.9055 4.0231 0.1572 8 7 3.9428 3.7035 2.0954 9 6 4.2187 2.8127 3.2254 10 6 4.4388 5.0819 2.1112 11 6 3.4627 5.9663 2.8896 12 1 3.4134 5.7150 3.9491 13 6 2.0834 6.1064 2.2204 14 6 2.1627 7.5967 2.5984 15 7 3.6262 7.4089 2.6248 16 6 4.6864 8.2264 2.4696 17 8 5.8089 7.7676 2.4547 18 6 4.4769 9.7107 2.3145 19 16 6.0800 10.5300 2.1276 20 6 5.5518 12.2036 1.9706 21 1 4.4994 12.4434 2.0063 22 6 6.4884 13.2139 1.8011 23 7 7.7712 12.9218 1.7582 24 14 5.9286 14.9883 1.6355 25 1 4.4470 15.0496 1.7167 26 1 6.5187 15.7980 2.7315 27 1 6.3748 15.5279 0.3259 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.7259 2.1019 -0.7801 34 1 2.7532 0.8303 2.8402 35 1 3.4356 -0.1411 1.5140 36 1 4.4040 1.1537 2.2582 37 1 5.1123 2.2250 3.0149 38 1 4.3779 3.4063 4.1255 39 1 3.3712 2.1440 3.3762 40 1 5.4170 5.1105 2.5911 41 1 4.5250 5.4487 1.0884 42 1 2.0966 5.9249 1.1457 43 1 1.2895 5.5635 2.7334 44 1 1.8201 8.2683 1.8112 45 1 1.7297 7.8266 3.5719 46 1 3.8660 9.9012 1.4321 47 1 3.9709 10.1005 3.1977 48 1 8.4257 13.6278 1.6401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001684061693.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:13 Heat of formation + Delta-G solvation = -18.945598 kcal Electronic energy + Delta-G solvation = -27101.080356 eV Core-core repulsion = 23284.216331 eV Total energy + Delta-G solvation = -3816.864025 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.79100 -40.80908 -38.78587 -37.15145 -36.77166 -34.62255 -33.12073 -32.05644 -30.07833 -29.44112 -28.70791 -27.67731 -26.85860 -25.42359 -24.04448 -23.01368 -21.24221 -20.29286 -19.56232 -19.28382 -18.09400 -17.73063 -17.48538 -17.18115 -16.92223 -16.75140 -16.36684 -15.85295 -15.57049 -15.41961 -14.97912 -14.88692 -14.61210 -14.42365 -14.28058 -14.12541 -13.98347 -13.71598 -13.40579 -13.27264 -13.18332 -13.15245 -12.93722 -12.85929 -12.78756 -12.63489 -12.47095 -12.16038 -11.83223 -11.79367 -11.74716 -11.50093 -11.18856 -10.90420 -10.70574 -10.33311 -10.14100 -9.84259 -9.46479 -8.71654 -8.38045 -6.17050 0.38703 1.15291 1.38432 1.39364 1.52767 1.53989 1.74479 2.19599 2.21322 2.24509 2.95929 3.16663 3.37704 3.52145 3.62142 3.80713 3.98009 3.98744 4.01782 4.17816 4.19323 4.22673 4.32442 4.35449 4.40051 4.45871 4.48561 4.53827 4.56739 4.68437 4.72982 4.84683 4.85792 4.87475 4.92913 4.98159 5.09772 5.14826 5.19264 5.27520 5.35942 5.38296 5.43890 5.58845 5.64389 6.16640 6.38276 6.56163 7.02830 7.07020 7.13007 8.71680 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026867 B = 0.001977 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.930035 B =14157.362549 C =14458.283384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C -0.070 4.070 4 C -0.194 4.194 5 C -0.136 4.136 6 C 0.543 3.457 7 O -0.585 6.585 8 N -0.603 5.603 9 C 0.051 3.949 10 C 0.123 3.877 11 C 0.122 3.878 12 H 0.119 0.881 13 C -0.131 4.131 14 C 0.102 3.898 15 N -0.644 5.644 16 C 0.552 3.448 17 O -0.563 6.563 18 C -0.120 4.120 19 S -0.148 6.148 20 C -0.548 4.548 21 H 0.081 0.919 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 1.001 2.999 25 H -0.257 1.257 26 H -0.271 1.271 27 H -0.273 1.273 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.117 0.883 40 H 0.076 0.924 41 H 0.051 0.949 42 H 0.079 0.921 43 H 0.109 0.891 44 H 0.086 0.914 45 H 0.117 0.883 46 H 0.098 0.902 47 H 0.106 0.894 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.589 -29.679 4.497 35.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.140 4.140 3 C -0.090 4.090 4 C -0.197 4.197 5 C -0.191 4.191 6 C 0.335 3.665 7 O -0.466 6.466 8 N -0.334 5.334 9 C -0.090 4.090 10 C -0.001 4.001 11 C 0.018 3.982 12 H 0.137 0.863 13 C -0.169 4.169 14 C -0.019 4.019 15 N -0.382 5.382 16 C 0.341 3.659 17 O -0.442 6.442 18 C -0.271 4.271 19 S 0.080 5.920 20 C -0.695 4.695 21 H 0.099 0.901 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.823 3.177 25 H -0.181 1.181 26 H -0.196 1.196 27 H -0.199 1.199 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.135 0.865 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.098 0.902 43 H 0.128 0.872 44 H 0.104 0.896 45 H 0.135 0.865 46 H 0.116 0.884 47 H 0.124 0.876 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.747 -29.774 4.014 34.396 hybrid contribution -0.791 2.141 -0.458 2.328 sum -17.539 -27.633 3.556 32.922 Atomic orbital electron populations 1.21695 0.93986 1.02789 1.01951 1.20925 0.96780 0.91681 1.04598 1.23723 0.92131 0.98524 0.94622 1.21452 1.03660 0.92146 1.02454 1.21758 1.02581 0.97254 0.97553 1.19154 0.77041 0.89394 0.80871 1.90760 1.55998 1.59026 1.40849 1.47665 1.53623 1.11682 1.20476 1.23098 1.03722 0.94757 0.87389 1.21279 0.96782 0.81674 1.00366 1.23391 0.94873 0.79347 1.00590 0.86319 1.23491 0.95866 0.95552 1.01959 1.23486 0.77025 0.97772 1.03594 1.50211 1.07092 1.09627 1.71251 1.19778 0.83460 0.87372 0.75303 1.90662 1.24504 1.77264 1.51755 1.23278 1.03653 0.94256 1.05883 1.85524 1.06937 1.04125 1.95447 1.23226 0.96191 0.92084 1.58040 0.90078 1.26161 0.94428 1.04849 0.93713 1.70186 1.01845 1.35245 1.47432 0.84873 0.78957 0.75720 0.78183 1.18105 1.19609 1.19853 0.93133 0.90678 0.92663 0.89593 0.88510 0.88085 0.88488 0.90018 0.89038 0.90545 0.90403 0.86515 0.90580 0.93079 0.90227 0.87244 0.89575 0.86494 0.88360 0.87582 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.90 71.98 0.71 -0.37 16 2 C -0.10 -0.81 6.03 29.85 0.18 -0.63 16 3 C -0.07 -1.04 9.08 24.52 0.22 -0.82 16 4 C -0.19 -2.99 5.87 -18.70 -0.11 -3.10 16 5 C -0.14 -0.91 7.20 71.24 0.51 -0.40 16 6 C 0.54 12.68 7.27 86.57 0.63 13.31 16 7 O -0.58 -18.89 13.92 -4.08 -0.06 -18.95 16 8 N -0.60 -12.07 2.79 -851.05 -2.38 -14.45 16 9 C 0.05 0.51 8.71 127.77 1.11 1.62 16 10 C 0.12 3.37 4.77 86.38 0.41 3.78 16 11 C 0.12 2.88 4.53 45.09 0.20 3.09 16 12 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 13 C -0.13 -2.65 7.24 31.25 0.23 -2.42 16 14 C 0.10 2.11 8.61 86.48 0.74 2.86 16 15 N -0.64 -19.62 3.49 -813.98 -2.84 -22.46 16 16 C 0.55 22.90 7.99 87.66 0.70 23.60 16 17 O -0.56 -27.95 15.87 -3.02 -0.05 -28.00 16 18 C -0.12 -5.24 5.91 71.24 0.42 -4.82 16 19 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 20 C -0.55 -32.45 9.50 67.96 0.65 -31.81 16 21 H 0.08 4.50 7.80 -2.91 -0.02 4.47 16 22 C 0.01 0.77 5.49 84.86 0.47 1.24 16 23 N -0.91 -57.17 13.22 21.65 0.29 -56.89 16 24 Si 1.00 44.72 29.55 68.60 2.03 46.74 16 25 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.35 8.14 -2.38 -0.02 0.33 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.10 0.44 5.58 -2.39 -0.01 0.42 16 33 H 0.10 1.99 7.51 -2.91 -0.02 1.97 16 34 H 0.10 0.24 6.73 -2.39 -0.02 0.22 16 35 H 0.08 0.35 6.21 -2.39 -0.01 0.34 16 36 H 0.09 0.58 4.54 -2.39 -0.01 0.57 16 37 H 0.08 0.62 6.47 -2.38 -0.02 0.60 16 38 H 0.08 0.67 8.04 -2.39 -0.02 0.65 16 39 H 0.12 0.58 4.50 -2.39 -0.01 0.57 16 40 H 0.08 2.23 8.04 -2.39 -0.02 2.21 16 41 H 0.05 1.83 7.33 -2.39 -0.02 1.82 16 42 H 0.08 2.14 6.38 -2.38 -0.02 2.13 16 43 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 45 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.10 4.05 8.14 -2.40 -0.02 4.03 16 47 H 0.11 4.22 8.14 -2.39 -0.02 4.20 16 48 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -86.61 397.72 3.87 -82.74 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.96 Total: 15.90 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 7.08 Total: 5.13 kcal Atomic # 7 Polarization: -88.87 SS G_CDS: -4.93 Total: -93.80 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -0.10 Total: -46.95 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -86.61 3.87 -82.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001684061693.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.795 kcal (2) G-P(sol) polarization free energy of solvation -86.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds