Wall clock time and date at job start Sat Apr 11 2020 06:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47063 * 2 1 4 4 C 1.52996 * 109.47033 * 174.94509 * 3 2 1 5 5 C 1.50701 * 115.56224 * 38.89306 * 4 3 2 6 6 O 1.21284 * 120.00220 * 259.02901 * 5 4 3 7 7 N 1.34781 * 119.99835 * 79.03239 * 5 4 3 8 8 C 1.46967 * 120.59077 * 4.93622 * 7 5 4 9 9 C 1.53812 * 108.39857 * 124.76058 * 8 7 5 10 10 N 1.46965 * 108.57730 * 49.63317 * 9 8 7 11 11 C 1.34772 * 120.59201 * 124.63121 * 10 9 8 12 12 O 1.21279 * 120.00035 * 180.02562 * 11 10 9 13 13 C 1.50707 * 120.00091 * 0.02562 * 11 10 9 14 14 S 1.80996 * 109.46919 * 180.02562 * 13 11 10 15 15 C 1.76208 * 99.99764 * 180.02562 * 14 13 11 16 16 H 1.07997 * 119.99699 * 359.97438 * 15 14 13 17 17 C 1.38796 * 120.00148 * 180.02562 * 15 14 13 18 18 N 1.31628 * 120.00470 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99820 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46983 * 90.00722 * 19 17 15 21 21 H 1.48503 * 109.47288 * 210.00309 * 19 17 15 22 22 H 1.48495 * 109.47255 * 330.00514 * 19 17 15 23 23 C 1.46963 * 118.81508 * 304.64726 * 10 9 8 24 24 C 1.46957 * 120.59494 * 185.21690 * 7 5 4 25 25 C 1.53003 * 117.49935 * 184.58830 * 4 3 2 26 26 C 1.52998 * 60.00177 * 107.48747 * 25 4 3 27 27 H 1.09005 * 109.46858 * 175.68652 * 1 2 3 28 28 H 1.09002 * 109.46972 * 295.67848 * 1 2 3 29 29 H 1.08993 * 109.47350 * 55.68349 * 1 2 3 30 30 H 1.09000 * 109.46834 * 240.00433 * 2 1 3 31 31 H 1.08995 * 109.47338 * 120.00617 * 2 1 3 32 32 H 1.09001 * 109.46391 * 54.94586 * 3 2 1 33 33 H 1.08994 * 109.46775 * 294.94518 * 3 2 1 34 34 H 1.09003 * 109.60757 * 244.54020 * 8 7 5 35 35 H 1.09000 * 109.61339 * 5.05069 * 8 7 5 36 36 H 1.09001 * 109.73839 * 289.84953 * 9 8 7 37 37 H 1.08994 * 109.67653 * 169.38180 * 9 8 7 38 38 H 1.08998 * 109.46893 * 300.00580 * 13 11 10 39 39 H 1.09000 * 109.46946 * 60.00469 * 13 11 10 40 40 H 0.96996 * 120.00630 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.61131 * 295.48316 * 23 10 9 42 42 H 1.08997 * 109.61391 * 174.97518 * 23 10 9 43 43 H 1.09004 * 109.61321 * 354.94517 * 24 7 5 44 44 H 1.08993 * 109.61363 * 115.28799 * 24 7 5 45 45 H 1.08995 * 117.49471 * 359.97438 * 25 4 3 46 46 H 1.08994 * 117.49738 * 214.97718 * 25 4 3 47 47 H 1.09000 * 117.50050 * 107.49146 * 26 25 4 48 48 H 1.09005 * 117.50232 * 252.51140 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5647 1.4444 0.1271 5 6 4.2823 0.3625 -0.6381 6 8 4.6789 -0.6276 -0.0606 7 7 4.4834 0.4951 -1.9642 8 6 4.1056 1.7346 -2.6577 9 6 5.3427 2.2746 -3.3952 10 7 5.9380 1.1800 -4.1746 11 6 6.1383 1.3124 -5.5007 12 8 6.6300 0.4021 -6.1335 13 6 5.7514 2.5915 -6.1974 14 16 6.1417 2.4605 -7.9599 15 6 5.6035 4.0453 -8.5110 16 1 5.1830 4.7478 -7.8067 17 6 5.7189 4.3903 -9.8504 18 7 5.3174 5.5743 -10.2621 19 14 6.4455 3.1748 -11.0687 20 1 5.3608 2.3337 -11.6355 21 1 7.1209 3.9158 -12.1642 22 1 7.4324 2.3087 -10.3751 23 6 6.3106 -0.0615 -3.4820 24 6 5.0787 -0.5994 -2.7436 25 6 4.2613 2.8007 0.2542 26 6 4.1612 1.8754 1.4685 27 1 -0.3633 -1.0248 -0.0773 28 1 -0.3633 0.4453 0.9262 29 1 -0.3634 0.5793 -0.8487 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6045 1.9817 0.8413 33 1 1.7525 1.9295 -0.9318 34 1 3.3115 1.5252 -3.3744 35 1 3.7611 2.4701 -1.9308 36 1 6.0691 2.6462 -2.6724 37 1 5.0471 3.0820 -4.0651 38 1 4.6821 2.7632 -6.0740 39 1 6.3055 3.4237 -5.7631 40 1 5.3984 5.8156 -11.1981 41 1 7.1060 0.1439 -2.7655 42 1 6.6516 -0.7980 -4.2095 43 1 5.3771 -1.4056 -2.0734 44 1 4.3514 -0.9730 -3.4642 45 1 3.6334 3.6916 0.2468 46 1 5.2386 2.9104 -0.2157 47 1 5.0727 1.3764 1.7976 48 1 3.4674 2.1575 2.2605 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001686357034.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:30 Heat of formation + Delta-G solvation = -45.280882 kcal Electronic energy + Delta-G solvation = -27933.110631 eV Core-core repulsion = 24115.104623 eV Total energy + Delta-G solvation = -3818.006009 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.06288 -39.65821 -37.60111 -36.87879 -34.29965 -34.10132 -32.48217 -32.03897 -29.57569 -28.19438 -27.47403 -25.66753 -24.44509 -23.82508 -22.93142 -22.15536 -21.70282 -19.93255 -18.51336 -17.66341 -17.16185 -16.68416 -16.29304 -15.97752 -15.85448 -15.59677 -15.43454 -15.00417 -14.90055 -14.65939 -13.96345 -13.87573 -13.74342 -13.52665 -13.44837 -13.00426 -12.83959 -12.78675 -12.62592 -12.22884 -12.09815 -11.97571 -11.83468 -11.77182 -11.62089 -11.56191 -11.29399 -11.17583 -11.04474 -10.74861 -10.64255 -10.39892 -9.91106 -9.89737 -9.59169 -9.41944 -9.04429 -8.54544 -8.49810 -6.97339 -6.33202 -4.05522 2.27961 2.40922 2.72195 2.83535 3.11949 3.23076 3.30054 3.47368 3.53175 3.97920 4.12633 4.28744 4.33924 4.42788 4.47178 4.51350 4.69528 4.72709 4.81653 4.87141 4.88242 4.99539 5.05335 5.06491 5.07062 5.17437 5.23859 5.29242 5.35013 5.38668 5.42790 5.48269 5.50077 5.50732 5.57594 5.64318 5.67387 5.72202 5.76124 5.84478 5.89303 5.97586 6.14541 6.38066 7.02830 7.32928 7.85649 7.89688 8.32203 8.36578 9.13043 10.75936 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017987 B = 0.002475 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.335597 B =11310.075540 C =11761.033124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.073 4.073 4 C -0.157 4.157 5 C 0.557 3.443 6 O -0.537 6.537 7 N -0.607 5.607 8 C 0.089 3.911 9 C 0.093 3.907 10 N -0.619 5.619 11 C 0.534 3.466 12 O -0.515 6.515 13 C -0.122 4.122 14 S -0.142 6.142 15 C -0.521 4.521 16 H 0.088 0.912 17 C 0.096 3.904 18 N -0.880 5.880 19 Si 0.856 3.144 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 C 0.101 3.899 24 C 0.097 3.903 25 C -0.167 4.167 26 C -0.142 4.142 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.271 0.729 41 H 0.069 0.931 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.074 0.926 45 H 0.107 0.893 46 H 0.100 0.900 47 H 0.100 0.900 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.564 -6.388 24.335 26.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.111 4.111 4 C -0.160 4.160 5 C 0.345 3.655 6 O -0.413 6.413 7 N -0.340 5.340 8 C -0.035 4.035 9 C -0.031 4.031 10 N -0.356 5.356 11 C 0.322 3.678 12 O -0.389 6.389 13 C -0.273 4.273 14 S 0.085 5.915 15 C -0.669 4.669 16 H 0.106 0.894 17 C -0.113 4.113 18 N -0.516 5.516 19 Si 0.681 3.319 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.159 1.159 23 C -0.022 4.022 24 C -0.026 4.026 25 C -0.204 4.204 26 C -0.180 4.180 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.122 0.878 36 H 0.091 0.909 37 H 0.122 0.878 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.093 0.907 45 H 0.126 0.874 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.633 -8.151 23.529 25.530 hybrid contribution -0.398 0.929 -0.016 1.011 sum -6.031 -7.222 23.513 25.326 Atomic orbital electron populations 1.21758 0.95445 1.01862 1.01771 1.21517 0.95956 0.96167 1.02602 1.21143 0.89247 0.97902 1.02811 1.21487 0.96141 0.96288 1.02106 1.19522 0.78065 0.86659 0.81232 1.90692 1.50839 1.31551 1.68215 1.47998 1.62034 1.16601 1.07368 1.22382 0.97232 0.86583 0.97272 1.22212 0.94822 0.90130 0.95942 1.48017 1.63929 1.16055 1.07594 1.20352 0.77428 0.89179 0.80813 1.90697 1.42571 1.41521 1.64153 1.23311 1.04863 0.97386 1.01713 1.84847 1.83159 1.24426 0.99094 1.22289 1.47838 0.98950 0.97803 0.89368 1.24705 0.93927 0.95102 0.97524 1.69928 1.45227 1.19624 1.16850 0.86746 0.81328 0.81975 0.81872 1.19192 1.19914 1.15922 1.21905 0.96062 0.87657 0.96589 1.22049 0.95419 0.89992 0.95099 1.23199 1.02184 0.92762 1.02271 1.23063 1.03003 1.01374 0.90542 0.92649 0.92713 0.92605 0.92221 0.91441 0.90651 0.90966 0.90397 0.87831 0.90864 0.87790 0.88492 0.88443 0.91894 0.91281 0.87614 0.87929 0.90731 0.87424 0.88183 0.88173 0.87792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.12 -0.97 5.28 -26.73 -0.14 -1.12 16 3 C -0.07 -0.47 5.31 -26.73 -0.14 -0.61 16 4 C -0.16 -1.19 1.07 -155.66 -0.17 -1.36 16 5 C 0.56 5.85 5.34 -10.98 -0.06 5.79 16 6 O -0.54 -7.51 16.40 5.55 0.09 -7.42 16 7 N -0.61 -5.81 2.94 -172.21 -0.51 -6.32 16 8 C 0.09 0.70 6.39 -3.36 -0.02 0.68 16 9 C 0.09 0.85 6.52 -3.37 -0.02 0.83 16 10 N -0.62 -7.83 2.95 -172.21 -0.51 -8.34 16 11 C 0.53 9.15 7.72 -10.98 -0.08 9.06 16 12 O -0.52 -10.76 15.27 5.56 0.08 -10.67 16 13 C -0.12 -2.24 4.50 36.01 0.16 -2.08 16 14 S -0.14 -3.49 18.55 -107.50 -1.99 -5.48 16 15 C -0.52 -14.58 10.04 30.94 0.31 -14.27 16 16 H 0.09 2.55 8.03 -52.49 -0.42 2.13 16 17 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 18 N -0.88 -26.04 13.97 55.49 0.78 -25.27 16 19 Si 0.86 21.42 27.74 -169.99 -4.71 16.71 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 23 C 0.10 1.16 6.59 -3.60 -0.02 1.13 16 24 C 0.10 1.00 6.60 -3.60 -0.02 0.98 16 25 C -0.17 -0.96 8.03 -26.73 -0.21 -1.17 16 26 C -0.14 -0.97 9.79 -26.73 -0.26 -1.23 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.56 7.43 -51.93 -0.39 0.17 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.40 7.94 -51.93 -0.41 -0.01 16 33 H 0.07 0.42 7.86 -51.93 -0.41 0.01 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.61 4.61 -51.93 -0.24 0.37 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.91 5.91 -51.93 -0.31 0.61 16 38 H 0.10 1.62 7.72 -51.92 -0.40 1.22 16 39 H 0.10 1.65 7.91 -51.92 -0.41 1.24 16 40 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.11 1.34 6.99 -51.93 -0.36 0.98 16 43 H 0.10 1.09 6.99 -51.93 -0.36 0.73 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.10 0.55 8.08 -51.93 -0.42 0.13 16 LS Contribution 394.68 15.07 5.95 5.95 Total: -1.00 -34.64 394.68 -9.18 -43.81 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -7.94 Total: -1.66 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -0.42 Total: -1.31 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: -0.24 Total: -39.92 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: 0.18 Total: -18.09 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.71 Total: 16.71 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.64 -9.18 -43.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686357034.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.467 kcal (2) G-P(sol) polarization free energy of solvation -34.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds