Wall clock time and date at job start Sat Apr 11 2020 06:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47063 * 2 1 4 4 C 1.52996 * 109.47033 * 174.94509 * 3 2 1 5 5 C 1.50701 * 115.56224 * 38.89306 * 4 3 2 6 6 O 1.21284 * 120.00220 * 259.02901 * 5 4 3 7 7 N 1.34781 * 119.99835 * 79.03239 * 5 4 3 8 8 C 1.46967 * 120.59077 * 4.93622 * 7 5 4 9 9 C 1.53812 * 108.39857 * 124.76058 * 8 7 5 10 10 N 1.46965 * 108.57730 * 49.63317 * 9 8 7 11 11 C 1.34772 * 120.59201 * 124.63121 * 10 9 8 12 12 O 1.21279 * 120.00035 * 180.02562 * 11 10 9 13 13 C 1.50707 * 120.00091 * 0.02562 * 11 10 9 14 14 S 1.80996 * 109.46919 * 180.02562 * 13 11 10 15 15 C 1.76208 * 99.99764 * 180.02562 * 14 13 11 16 16 H 1.07997 * 119.99699 * 359.97438 * 15 14 13 17 17 C 1.38796 * 120.00148 * 180.02562 * 15 14 13 18 18 N 1.31628 * 120.00470 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99820 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46983 * 90.00722 * 19 17 15 21 21 H 1.48503 * 109.47288 * 210.00309 * 19 17 15 22 22 H 1.48495 * 109.47255 * 330.00514 * 19 17 15 23 23 C 1.46963 * 118.81508 * 304.64726 * 10 9 8 24 24 C 1.46957 * 120.59494 * 185.21690 * 7 5 4 25 25 C 1.53003 * 117.49935 * 184.58830 * 4 3 2 26 26 C 1.52998 * 60.00177 * 107.48747 * 25 4 3 27 27 H 1.09005 * 109.46858 * 175.68652 * 1 2 3 28 28 H 1.09002 * 109.46972 * 295.67848 * 1 2 3 29 29 H 1.08993 * 109.47350 * 55.68349 * 1 2 3 30 30 H 1.09000 * 109.46834 * 240.00433 * 2 1 3 31 31 H 1.08995 * 109.47338 * 120.00617 * 2 1 3 32 32 H 1.09001 * 109.46391 * 54.94586 * 3 2 1 33 33 H 1.08994 * 109.46775 * 294.94518 * 3 2 1 34 34 H 1.09003 * 109.60757 * 244.54020 * 8 7 5 35 35 H 1.09000 * 109.61339 * 5.05069 * 8 7 5 36 36 H 1.09001 * 109.73839 * 289.84953 * 9 8 7 37 37 H 1.08994 * 109.67653 * 169.38180 * 9 8 7 38 38 H 1.08998 * 109.46893 * 300.00580 * 13 11 10 39 39 H 1.09000 * 109.46946 * 60.00469 * 13 11 10 40 40 H 0.96996 * 120.00630 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.61131 * 295.48316 * 23 10 9 42 42 H 1.08997 * 109.61391 * 174.97518 * 23 10 9 43 43 H 1.09004 * 109.61321 * 354.94517 * 24 7 5 44 44 H 1.08993 * 109.61363 * 115.28799 * 24 7 5 45 45 H 1.08995 * 117.49471 * 359.97438 * 25 4 3 46 46 H 1.08994 * 117.49738 * 214.97718 * 25 4 3 47 47 H 1.09000 * 117.50050 * 107.49146 * 26 25 4 48 48 H 1.09005 * 117.50232 * 252.51140 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5647 1.4444 0.1271 5 6 4.2823 0.3625 -0.6381 6 8 4.6789 -0.6276 -0.0606 7 7 4.4834 0.4951 -1.9642 8 6 4.1056 1.7346 -2.6577 9 6 5.3427 2.2746 -3.3952 10 7 5.9380 1.1800 -4.1746 11 6 6.1383 1.3124 -5.5007 12 8 6.6300 0.4021 -6.1335 13 6 5.7514 2.5915 -6.1974 14 16 6.1417 2.4605 -7.9599 15 6 5.6035 4.0453 -8.5110 16 1 5.1830 4.7478 -7.8067 17 6 5.7189 4.3903 -9.8504 18 7 5.3174 5.5743 -10.2621 19 14 6.4455 3.1748 -11.0687 20 1 5.3608 2.3337 -11.6355 21 1 7.1209 3.9158 -12.1642 22 1 7.4324 2.3087 -10.3751 23 6 6.3106 -0.0615 -3.4820 24 6 5.0787 -0.5994 -2.7436 25 6 4.2613 2.8007 0.2542 26 6 4.1612 1.8754 1.4685 27 1 -0.3633 -1.0248 -0.0773 28 1 -0.3633 0.4453 0.9262 29 1 -0.3634 0.5793 -0.8487 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6045 1.9817 0.8413 33 1 1.7525 1.9295 -0.9318 34 1 3.3115 1.5252 -3.3744 35 1 3.7611 2.4701 -1.9308 36 1 6.0691 2.6462 -2.6724 37 1 5.0471 3.0820 -4.0651 38 1 4.6821 2.7632 -6.0740 39 1 6.3055 3.4237 -5.7631 40 1 5.3984 5.8156 -11.1981 41 1 7.1060 0.1439 -2.7655 42 1 6.6516 -0.7980 -4.2095 43 1 5.3771 -1.4056 -2.0734 44 1 4.3514 -0.9730 -3.4642 45 1 3.6334 3.6916 0.2468 46 1 5.2386 2.9104 -0.2157 47 1 5.0727 1.3764 1.7976 48 1 3.4674 2.1575 2.2605 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001686357034.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:29 Heat of formation + Delta-G solvation = -66.560929 kcal Electronic energy + Delta-G solvation = -27934.033403 eV Core-core repulsion = 24115.104623 eV Total energy + Delta-G solvation = -3818.928781 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.88492 -40.78172 -38.42610 -37.80215 -35.14644 -34.83849 -34.65176 -32.96216 -30.85940 -28.96339 -28.21558 -27.81282 -25.30001 -24.63518 -23.42799 -22.87035 -22.44472 -20.92707 -19.95286 -19.05497 -18.26420 -17.46372 -17.31549 -17.14138 -16.91074 -16.82401 -16.62268 -16.05965 -15.69952 -15.56007 -15.40094 -14.97686 -14.89914 -14.73243 -14.29662 -14.23575 -13.78142 -13.53734 -13.46069 -13.34198 -13.24354 -13.01653 -12.88014 -12.74046 -12.61452 -12.55256 -12.41418 -12.38048 -12.11810 -11.86117 -11.75112 -11.31061 -11.15931 -10.98879 -10.93642 -10.65170 -10.50098 -10.39234 -9.46829 -8.98581 -8.50111 -6.20509 0.96964 1.31817 1.43006 1.44234 1.51708 1.55401 1.75099 2.09318 2.25662 2.68513 2.70379 2.88562 3.33407 3.45293 3.59770 3.71244 3.86752 3.87831 3.97672 4.06827 4.11938 4.15304 4.19080 4.28793 4.32147 4.40239 4.44156 4.50932 4.59218 4.60842 4.71892 4.76456 4.83430 4.84669 4.89855 4.92893 4.98215 5.02040 5.21854 5.24649 5.29681 5.33646 5.38059 5.41876 5.72735 6.12308 6.14009 6.30702 6.95794 7.02152 7.06203 8.61948 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017987 B = 0.002475 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.335597 B =11310.075540 C =11761.033124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.069 4.069 4 C -0.168 4.168 5 C 0.555 3.445 6 O -0.580 6.580 7 N -0.605 5.605 8 C 0.092 3.908 9 C 0.086 3.914 10 N -0.607 5.607 11 C 0.536 3.464 12 O -0.561 6.561 13 C -0.105 4.105 14 S -0.182 6.182 15 C -0.523 4.523 16 H 0.067 0.933 17 C 0.047 3.953 18 N -0.916 5.916 19 Si 0.910 3.090 20 H -0.263 1.263 21 H -0.261 1.261 22 H -0.238 1.238 23 C 0.106 3.894 24 C 0.104 3.896 25 C -0.147 4.147 26 C -0.149 4.149 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.131 0.869 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.276 0.724 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.073 0.927 45 H 0.134 0.866 46 H 0.100 0.900 47 H 0.081 0.919 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.381 -5.312 25.817 27.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.106 4.106 4 C -0.171 4.171 5 C 0.344 3.656 6 O -0.459 6.459 7 N -0.338 5.338 8 C -0.031 4.031 9 C -0.037 4.037 10 N -0.341 5.341 11 C 0.324 3.676 12 O -0.439 6.439 13 C -0.256 4.256 14 S 0.045 5.955 15 C -0.671 4.671 16 H 0.086 0.914 17 C -0.158 4.158 18 N -0.554 5.554 19 Si 0.732 3.268 20 H -0.188 1.188 21 H -0.186 1.186 22 H -0.162 1.162 23 C -0.018 4.018 24 C -0.020 4.020 25 C -0.184 4.184 26 C -0.187 4.187 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.149 0.851 36 H 0.111 0.889 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.115 0.885 44 H 0.091 0.909 45 H 0.152 0.848 46 H 0.118 0.882 47 H 0.100 0.900 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.471 -7.042 25.047 26.811 hybrid contribution -0.173 0.573 -0.273 0.658 sum -6.644 -6.469 24.774 26.452 Atomic orbital electron populations 1.21736 0.94351 1.01807 1.02629 1.21472 0.96891 0.97066 1.00670 1.21168 0.88256 0.96883 1.04281 1.21479 0.96619 0.96592 1.02459 1.20085 0.77412 0.86771 0.81286 1.90670 1.52675 1.33486 1.69077 1.48077 1.61519 1.16869 1.07301 1.22510 0.96548 0.86282 0.97723 1.22549 0.95744 0.89201 0.96200 1.47992 1.62537 1.17258 1.06308 1.20105 0.77309 0.88086 0.82068 1.90687 1.45002 1.42676 1.65551 1.23279 1.06459 0.98911 0.96953 1.84839 1.83452 1.22386 1.04839 1.22427 1.47032 0.99961 0.97637 0.91441 1.25498 0.94449 0.96585 0.99299 1.70000 1.46635 1.21157 1.17620 0.85927 0.80715 0.80061 0.80048 1.18824 1.18556 1.16199 1.21924 0.96817 0.86841 0.96189 1.21890 0.94936 0.90293 0.94860 1.23334 1.02197 0.92406 1.00464 1.23127 1.02655 1.01771 0.91122 0.93227 0.91566 0.91979 0.94395 0.93191 0.88749 0.89714 0.90147 0.85136 0.88879 0.86827 0.86386 0.86603 0.91418 0.90238 0.89087 0.88508 0.90887 0.84804 0.88197 0.90048 0.86071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 71.98 0.71 -0.96 16 2 C -0.12 -1.79 5.28 30.60 0.16 -1.63 16 3 C -0.07 -0.68 5.31 30.59 0.16 -0.52 16 4 C -0.17 -2.14 1.07 -52.93 -0.06 -2.20 16 5 C 0.55 11.01 5.34 87.66 0.47 11.48 16 6 O -0.58 -16.37 16.40 -3.04 -0.05 -16.42 16 7 N -0.61 -10.59 2.94 -817.15 -2.40 -12.99 16 8 C 0.09 1.16 6.39 86.56 0.55 1.71 16 9 C 0.09 1.29 6.52 86.56 0.56 1.85 16 10 N -0.61 -14.16 2.95 -817.16 -2.41 -16.57 16 11 C 0.54 17.65 7.72 87.66 0.68 18.33 16 12 O -0.56 -23.33 15.27 -3.03 -0.05 -23.38 16 13 C -0.11 -3.67 4.50 71.24 0.32 -3.35 16 14 S -0.18 -8.86 18.55 -56.49 -1.05 -9.91 16 15 C -0.52 -29.23 10.04 67.95 0.68 -28.55 16 16 H 0.07 3.93 8.03 -2.91 -0.02 3.90 16 17 C 0.05 2.70 5.50 84.86 0.47 3.16 16 18 N -0.92 -54.40 13.97 21.65 0.30 -54.10 16 19 Si 0.91 44.15 27.74 68.60 1.90 46.06 16 20 H -0.26 -12.51 7.11 99.48 0.71 -11.81 16 21 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.24 -11.57 6.74 99.48 0.67 -10.90 16 23 C 0.11 2.31 6.59 86.42 0.57 2.88 16 24 C 0.10 2.08 6.60 86.42 0.57 2.65 16 25 C -0.15 -1.13 8.03 30.59 0.25 -0.89 16 26 C -0.15 -1.70 9.79 30.60 0.30 -1.40 16 27 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.04 0.70 7.43 -2.39 -0.02 0.68 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 0.63 7.94 -2.39 -0.02 0.61 16 33 H 0.08 0.65 7.86 -2.39 -0.02 0.63 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.13 0.97 4.61 -2.39 -0.01 0.96 16 36 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.11 1.55 5.91 -2.39 -0.01 1.54 16 38 H 0.12 3.64 7.72 -2.40 -0.02 3.62 16 39 H 0.12 3.64 7.91 -2.39 -0.02 3.62 16 40 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.09 2.32 6.99 -2.39 -0.02 2.30 16 43 H 0.10 2.09 6.99 -2.38 -0.02 2.08 16 44 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.12 0.94 8.08 -2.38 -0.02 0.92 16 Total: -1.00 -76.71 394.68 3.55 -73.15 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.91 Total: 11.61 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 6.40 Total: 2.55 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -4.51 Total: -83.66 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -0.10 Total: -39.80 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.90 Total: 46.06 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.05 Total: -9.91 kcal Total: -76.71 3.55 -73.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686357034.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.591 kcal (2) G-P(sol) polarization free energy of solvation -76.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds