Wall clock time and date at job start Sat Apr 11 2020 06:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 120.00333 * 2 1 4 4 C 1.50700 * 119.99852 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.46977 * 95.00193 * 4 2 1 6 6 C 1.50701 * 109.47356 * 180.02562 * 5 4 2 7 7 O 1.21288 * 119.99530 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00367 * 179.97438 * 6 5 4 9 9 C 1.47023 * 125.64651 * 0.02562 * 8 6 5 10 10 C 1.54329 * 107.26834 * 181.02243 * 9 8 6 11 11 C 1.55155 * 102.94197 * 22.19354 * 10 9 8 12 12 H 1.09004 * 111.00348 * 82.57538 * 11 10 9 13 13 N 1.46498 * 111.00251 * 206.42200 * 11 10 9 14 14 C 1.46494 * 120.00232 * 58.54631 * 13 11 10 15 15 C 1.34781 * 120.00043 * 238.54532 * 13 11 10 16 16 O 1.21282 * 120.00090 * 0.02562 * 15 13 11 17 17 C 1.50699 * 120.00097 * 179.97438 * 15 13 11 18 18 S 1.81000 * 109.47452 * 180.02562 * 17 15 13 19 19 C 1.76192 * 100.00232 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99875 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00082 * 180.02562 * 19 18 17 22 22 N 1.31635 * 120.00109 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99946 * 359.97438 * 21 19 18 24 24 H 1.48491 * 109.46920 * 90.00191 * 23 21 19 25 25 H 1.48504 * 109.47210 * 210.00235 * 23 21 19 26 26 H 1.48501 * 109.47021 * 330.00184 * 23 21 19 27 27 C 1.47423 * 125.64872 * 179.71649 * 8 6 5 28 28 H 1.07991 * 119.99860 * 180.02562 * 1 2 3 29 29 H 1.08005 * 119.99909 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46953 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.47318 * 119.99680 * 3 2 1 32 32 H 1.09000 * 109.47161 * 240.00311 * 3 2 1 33 33 H 1.09000 * 109.46951 * 214.99529 * 4 2 1 34 34 H 1.08991 * 109.47502 * 334.99825 * 4 2 1 35 35 H 1.09005 * 109.47164 * 299.99603 * 5 4 2 36 36 H 1.08996 * 109.47906 * 59.99860 * 5 4 2 37 37 H 1.09003 * 109.88112 * 300.43792 * 9 8 6 38 38 H 1.08994 * 109.88219 * 61.60885 * 9 8 6 39 39 H 1.09001 * 110.71511 * 140.55416 * 10 9 8 40 40 H 1.08998 * 110.71775 * 263.64920 * 10 9 8 41 41 H 1.09000 * 109.47086 * 89.99925 * 14 13 11 42 42 H 1.08994 * 109.47706 * 210.00147 * 14 13 11 43 43 H 1.08999 * 109.47147 * 330.00190 * 14 13 11 44 44 H 1.09003 * 109.47313 * 300.00283 * 17 15 13 45 45 H 1.09002 * 109.46886 * 60.00188 * 17 15 13 46 46 H 0.96994 * 119.99767 * 179.97438 * 22 21 19 47 47 H 1.08996 * 110.36860 * 274.74533 * 27 8 6 48 48 H 1.09006 * 110.36617 * 37.06912 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6832 -1.4378 6 6 3.1803 -2.9887 -1.4385 7 8 3.4042 -3.5601 -0.3924 8 7 3.6048 -3.5212 -2.6015 9 6 3.4031 -2.9370 -3.9355 10 6 4.0337 -3.9043 -4.9594 11 6 4.0567 -5.2538 -4.1941 12 1 3.0902 -5.7541 -4.2552 13 7 5.1271 -6.1214 -4.6916 14 6 6.5186 -5.6653 -4.6499 15 6 4.8317 -7.3393 -5.1876 16 8 3.6797 -7.7168 -5.2226 17 6 5.9328 -8.2316 -5.6999 18 16 5.2219 -9.7857 -6.2961 19 6 6.6875 -10.6117 -6.8197 20 1 7.6468 -10.1265 -6.7168 21 6 6.6090 -11.8854 -7.3654 22 7 7.7039 -12.5023 -7.7571 23 14 4.9495 -12.7243 -7.5441 24 1 4.3663 -12.3907 -8.8683 25 1 5.1242 -14.1951 -7.4365 26 1 4.0389 -12.2541 -6.4694 27 6 4.3538 -4.7827 -2.7462 28 1 -0.5399 -0.9352 0.0004 29 1 -0.5400 0.9354 0.0004 30 1 1.3553 2.1336 0.0005 31 1 2.6902 1.3629 0.8900 32 1 2.6902 1.3628 -0.8900 33 1 2.9742 -1.1991 0.5888 34 1 1.4386 -2.0856 0.4334 35 1 1.5166 -1.7893 -2.0273 36 1 3.0523 -0.9028 -1.8718 37 1 2.3371 -2.8287 -4.1355 38 1 3.8937 -1.9654 -3.9927 39 1 3.4135 -3.9782 -5.8528 40 1 5.0439 -3.5872 -5.2181 41 1 6.9692 -5.9597 -3.7020 42 1 7.0739 -6.1170 -5.4719 43 1 6.5482 -4.5799 -4.7446 44 1 6.4534 -7.7333 -6.5178 45 1 6.6368 -8.4392 -4.8940 46 1 7.6490 -13.3926 -8.1382 47 1 5.4213 -4.6074 -2.6134 48 1 3.9972 -5.5202 -2.0271 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687220609.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:37 Heat of formation + Delta-G solvation = -54.995845 kcal Electronic energy + Delta-G solvation = -26589.781718 eV Core-core repulsion = 22771.354437 eV Total energy + Delta-G solvation = -3818.427281 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.71104 -39.57927 -37.81595 -36.70369 -35.13466 -32.46205 -32.15329 -31.17376 -29.81351 -28.43630 -27.69917 -27.02286 -25.65889 -25.15025 -23.27022 -21.60554 -19.62167 -19.28633 -18.86798 -17.83809 -17.38940 -17.29543 -16.42590 -15.80996 -15.75161 -15.49250 -15.33351 -14.98368 -14.59844 -14.42107 -13.98171 -13.85935 -13.76341 -13.47174 -13.38566 -13.19996 -12.99887 -12.81725 -12.70580 -12.49026 -12.42732 -12.18497 -12.13616 -12.08868 -11.68976 -11.46957 -11.32721 -11.28296 -11.07601 -11.02822 -10.63385 -10.20462 -9.88398 -9.59245 -9.46863 -9.08732 -9.02565 -8.70297 -8.52656 -6.95292 -6.31168 -4.03428 1.76253 2.29750 2.40541 2.76448 2.80890 3.15693 3.31305 3.48875 3.55322 3.98726 4.16238 4.30952 4.36945 4.43599 4.51422 4.58014 4.61112 4.71801 4.77032 4.79954 4.89105 4.94381 5.04602 5.07929 5.10854 5.15096 5.17074 5.24278 5.29859 5.39975 5.41990 5.48092 5.51089 5.55145 5.60128 5.64670 5.71755 5.73317 5.80557 5.86192 5.95728 6.20779 6.42970 6.44466 7.12003 7.29604 7.82243 7.91755 8.31257 8.39005 9.14987 10.77977 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032118 B = 0.001790 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.578926 B =15637.615369 C =15893.216701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.072 4.072 5 C -0.128 4.128 6 C 0.528 3.472 7 O -0.537 6.537 8 N -0.619 5.619 9 C 0.103 3.897 10 C -0.146 4.146 11 C 0.132 3.868 12 H 0.118 0.882 13 N -0.613 5.613 14 C 0.074 3.926 15 C 0.535 3.465 16 O -0.515 6.515 17 C -0.121 4.121 18 S -0.143 6.143 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.096 3.904 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.271 0.729 47 H 0.074 0.926 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.517 29.158 10.603 32.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.127 4.127 3 C -0.177 4.177 4 C -0.109 4.109 5 C -0.168 4.168 6 C 0.317 3.683 7 O -0.414 6.414 8 N -0.355 5.355 9 C -0.020 4.020 10 C -0.184 4.184 11 C 0.027 3.973 12 H 0.136 0.864 13 N -0.348 5.348 14 C -0.069 4.069 15 C 0.323 3.677 16 O -0.389 6.389 17 C -0.271 4.271 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.112 4.112 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.027 4.027 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.081 0.919 47 H 0.092 0.908 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.031 28.147 11.106 31.878 hybrid contribution 0.986 -0.034 -0.313 1.035 sum -9.044 28.113 10.793 31.442 Atomic orbital electron populations 1.23778 0.95204 1.01983 1.02112 1.21760 0.95445 0.95623 0.99913 1.20890 1.00286 0.94284 1.02248 1.20412 1.01030 0.94386 0.95114 1.21608 1.01087 0.94564 0.99518 1.20436 0.78983 0.86872 0.81988 1.90737 1.57164 1.62866 1.30636 1.48423 1.56653 1.23964 1.06450 1.22054 1.01232 0.97158 0.81585 1.23058 1.02643 0.94372 0.98375 1.22125 0.93389 0.90343 0.91442 0.86405 1.47656 1.07234 1.16404 1.63543 1.21844 0.81646 1.00576 1.02877 1.20374 0.90292 0.80604 0.76405 1.90697 1.21315 1.72652 1.54241 1.23314 0.99848 0.99868 1.04068 1.84811 1.15035 1.11054 1.80743 1.22296 0.92741 1.04416 1.47471 0.89367 1.24706 0.97064 0.95983 0.93484 1.69937 1.27529 1.14235 1.39901 0.86741 0.84547 0.79596 0.81009 1.19212 1.19907 1.15928 1.22567 0.96742 0.86019 0.97400 0.88400 0.88435 0.92004 0.91498 0.91590 0.90415 0.90422 0.88740 0.88821 0.90806 0.90919 0.89116 0.89728 0.92291 0.90093 0.91060 0.88373 0.88332 0.91919 0.90802 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.16 13.90 29.01 0.40 -0.76 16 2 C -0.13 -0.79 5.31 -101.06 -0.54 -1.33 16 3 C -0.12 -0.58 10.12 36.01 0.36 -0.22 16 4 C -0.07 -0.53 4.67 -27.88 -0.13 -0.66 16 5 C -0.13 -0.85 4.87 -27.88 -0.14 -0.99 16 6 C 0.53 5.44 7.85 -10.99 -0.09 5.35 16 7 O -0.54 -7.75 16.24 5.55 0.09 -7.66 16 8 N -0.62 -5.66 3.32 -170.38 -0.57 -6.22 16 9 C 0.10 0.62 6.49 -3.06 -0.02 0.60 16 10 C -0.15 -1.05 6.50 -24.89 -0.16 -1.21 16 11 C 0.13 1.42 3.47 -65.67 -0.23 1.19 16 12 H 0.12 1.54 7.02 -51.93 -0.36 1.17 16 13 N -0.61 -7.56 2.91 -171.35 -0.50 -8.06 16 14 C 0.07 0.66 8.91 59.84 0.53 1.19 16 15 C 0.54 9.21 7.69 -10.98 -0.08 9.12 16 16 O -0.52 -10.75 15.24 5.56 0.08 -10.67 16 17 C -0.12 -2.26 4.71 36.01 0.17 -2.09 16 18 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 19 C -0.52 -14.83 10.04 30.94 0.31 -14.52 16 20 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 21 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 22 N -0.88 -26.29 13.97 55.49 0.78 -25.52 16 23 Si 0.86 21.62 27.74 -169.99 -4.72 16.91 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 27 C 0.10 1.01 6.47 -2.41 -0.02 0.99 16 28 H 0.10 0.58 7.99 -52.49 -0.42 0.16 16 29 H 0.10 0.48 7.83 -52.48 -0.41 0.07 16 30 H 0.06 0.26 7.78 -51.93 -0.40 -0.15 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 34 H 0.08 0.67 7.94 -51.93 -0.41 0.26 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.53 6.32 -51.93 -0.33 0.20 16 41 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 42 H 0.08 0.73 6.44 -51.93 -0.33 0.40 16 43 H 0.07 0.46 6.32 -51.93 -0.33 0.13 16 44 H 0.10 1.69 7.40 -51.91 -0.38 1.30 16 45 H 0.10 1.74 8.11 -51.92 -0.42 1.32 16 46 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.07 0.72 7.05 -51.93 -0.37 0.35 16 48 H 0.08 1.07 8.03 -51.93 -0.42 0.65 16 LS Contribution 403.18 15.07 6.08 6.08 Total: -1.00 -35.53 403.18 -8.43 -43.96 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -7.97 Total: -2.63 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 0.29 Total: -0.62 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: -0.29 Total: -39.80 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.17 Total: -18.33 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.72 Total: 16.91 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.53 -8.43 -43.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687220609.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.036 kcal (2) G-P(sol) polarization free energy of solvation -35.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds