Wall clock time and date at job start Sat Apr 11 2020 06:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 120.00333 * 2 1 4 4 C 1.50700 * 119.99852 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.46977 * 95.00193 * 4 2 1 6 6 C 1.50701 * 109.47356 * 180.02562 * 5 4 2 7 7 O 1.21288 * 119.99530 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00367 * 179.97438 * 6 5 4 9 9 C 1.47023 * 125.64651 * 0.02562 * 8 6 5 10 10 C 1.54329 * 107.26834 * 181.02243 * 9 8 6 11 11 C 1.55155 * 102.94197 * 22.19354 * 10 9 8 12 12 H 1.09004 * 111.00348 * 82.57538 * 11 10 9 13 13 N 1.46498 * 111.00251 * 206.42200 * 11 10 9 14 14 C 1.46494 * 120.00232 * 58.54631 * 13 11 10 15 15 C 1.34781 * 120.00043 * 238.54532 * 13 11 10 16 16 O 1.21282 * 120.00090 * 0.02562 * 15 13 11 17 17 C 1.50699 * 120.00097 * 179.97438 * 15 13 11 18 18 S 1.81000 * 109.47452 * 180.02562 * 17 15 13 19 19 C 1.76192 * 100.00232 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99875 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00082 * 180.02562 * 19 18 17 22 22 N 1.31635 * 120.00109 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99946 * 359.97438 * 21 19 18 24 24 H 1.48491 * 109.46920 * 90.00191 * 23 21 19 25 25 H 1.48504 * 109.47210 * 210.00235 * 23 21 19 26 26 H 1.48501 * 109.47021 * 330.00184 * 23 21 19 27 27 C 1.47423 * 125.64872 * 179.71649 * 8 6 5 28 28 H 1.07991 * 119.99860 * 180.02562 * 1 2 3 29 29 H 1.08005 * 119.99909 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46953 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.47318 * 119.99680 * 3 2 1 32 32 H 1.09000 * 109.47161 * 240.00311 * 3 2 1 33 33 H 1.09000 * 109.46951 * 214.99529 * 4 2 1 34 34 H 1.08991 * 109.47502 * 334.99825 * 4 2 1 35 35 H 1.09005 * 109.47164 * 299.99603 * 5 4 2 36 36 H 1.08996 * 109.47906 * 59.99860 * 5 4 2 37 37 H 1.09003 * 109.88112 * 300.43792 * 9 8 6 38 38 H 1.08994 * 109.88219 * 61.60885 * 9 8 6 39 39 H 1.09001 * 110.71511 * 140.55416 * 10 9 8 40 40 H 1.08998 * 110.71775 * 263.64920 * 10 9 8 41 41 H 1.09000 * 109.47086 * 89.99925 * 14 13 11 42 42 H 1.08994 * 109.47706 * 210.00147 * 14 13 11 43 43 H 1.08999 * 109.47147 * 330.00190 * 14 13 11 44 44 H 1.09003 * 109.47313 * 300.00283 * 17 15 13 45 45 H 1.09002 * 109.46886 * 60.00188 * 17 15 13 46 46 H 0.96994 * 119.99767 * 179.97438 * 22 21 19 47 47 H 1.08996 * 110.36860 * 274.74533 * 27 8 6 48 48 H 1.09006 * 110.36617 * 37.06912 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6832 -1.4378 6 6 3.1803 -2.9887 -1.4385 7 8 3.4042 -3.5601 -0.3924 8 7 3.6048 -3.5212 -2.6015 9 6 3.4031 -2.9370 -3.9355 10 6 4.0337 -3.9043 -4.9594 11 6 4.0567 -5.2538 -4.1941 12 1 3.0902 -5.7541 -4.2552 13 7 5.1271 -6.1214 -4.6916 14 6 6.5186 -5.6653 -4.6499 15 6 4.8317 -7.3393 -5.1876 16 8 3.6797 -7.7168 -5.2226 17 6 5.9328 -8.2316 -5.6999 18 16 5.2219 -9.7857 -6.2961 19 6 6.6875 -10.6117 -6.8197 20 1 7.6468 -10.1265 -6.7168 21 6 6.6090 -11.8854 -7.3654 22 7 7.7039 -12.5023 -7.7571 23 14 4.9495 -12.7243 -7.5441 24 1 4.3663 -12.3907 -8.8683 25 1 5.1242 -14.1951 -7.4365 26 1 4.0389 -12.2541 -6.4694 27 6 4.3538 -4.7827 -2.7462 28 1 -0.5399 -0.9352 0.0004 29 1 -0.5400 0.9354 0.0004 30 1 1.3553 2.1336 0.0005 31 1 2.6902 1.3629 0.8900 32 1 2.6902 1.3628 -0.8900 33 1 2.9742 -1.1991 0.5888 34 1 1.4386 -2.0856 0.4334 35 1 1.5166 -1.7893 -2.0273 36 1 3.0523 -0.9028 -1.8718 37 1 2.3371 -2.8287 -4.1355 38 1 3.8937 -1.9654 -3.9927 39 1 3.4135 -3.9782 -5.8528 40 1 5.0439 -3.5872 -5.2181 41 1 6.9692 -5.9597 -3.7020 42 1 7.0739 -6.1170 -5.4719 43 1 6.5482 -4.5799 -4.7446 44 1 6.4534 -7.7333 -6.5178 45 1 6.6368 -8.4392 -4.8940 46 1 7.6490 -13.3926 -8.1382 47 1 5.4213 -4.6074 -2.6134 48 1 3.9972 -5.5202 -2.0271 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001687220609.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:36 Heat of formation + Delta-G solvation = -77.684897 kcal Electronic energy + Delta-G solvation = -26590.765589 eV Core-core repulsion = 22771.354437 eV Total energy + Delta-G solvation = -3819.411152 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.59467 -40.65995 -38.73034 -37.26576 -36.20033 -34.67500 -32.94477 -31.89750 -30.81738 -29.43191 -28.09572 -27.90619 -27.83421 -25.86641 -23.90921 -22.56399 -20.56034 -20.22354 -19.65190 -19.36186 -18.52320 -18.11250 -17.37839 -17.12602 -16.83633 -16.65941 -16.55603 -16.07617 -15.63438 -15.14561 -15.02541 -14.90006 -14.65626 -14.52463 -14.45399 -14.29885 -13.84715 -13.71062 -13.62294 -13.38772 -13.36433 -13.18584 -13.02473 -13.01063 -12.82551 -12.57618 -12.53460 -12.49098 -11.99206 -11.88114 -11.85737 -11.72384 -11.17529 -11.05988 -10.97501 -10.53163 -9.93883 -9.91944 -9.63834 -9.01056 -8.51993 -6.22989 0.95105 1.28753 1.30437 1.41675 1.45991 1.50562 1.55667 1.78521 2.19017 2.24560 2.67610 2.86411 3.30702 3.40803 3.64780 3.69452 3.92131 3.97347 4.03290 4.08375 4.14278 4.18909 4.23267 4.28914 4.34958 4.43314 4.52980 4.61796 4.62218 4.72183 4.74882 4.80634 4.85896 4.88815 4.95023 5.01590 5.07791 5.10281 5.12010 5.18142 5.20926 5.48787 5.70375 5.76138 5.99782 6.11003 6.14999 6.41541 6.93404 7.01551 7.06320 8.60225 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032118 B = 0.001790 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.578926 B =15637.615369 C =15893.216701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 C -0.120 4.120 4 C -0.070 4.070 5 C -0.117 4.117 6 C 0.521 3.479 7 O -0.590 6.590 8 N -0.619 5.619 9 C 0.102 3.898 10 C -0.134 4.134 11 C 0.128 3.872 12 H 0.089 0.911 13 N -0.598 5.598 14 C 0.063 3.937 15 C 0.536 3.464 16 O -0.561 6.561 17 C -0.105 4.105 18 S -0.180 6.180 19 C -0.528 4.528 20 H 0.064 0.936 21 C 0.047 3.953 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.261 1.261 25 H -0.260 1.260 26 H -0.239 1.239 27 C 0.101 3.899 28 H 0.093 0.907 29 H 0.110 0.890 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.111 0.889 36 H 0.123 0.877 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.106 0.894 44 H 0.118 0.882 45 H 0.111 0.889 46 H 0.277 0.723 47 H 0.086 0.914 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.889 32.383 9.992 35.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.130 4.130 3 C -0.177 4.177 4 C -0.108 4.108 5 C -0.156 4.156 6 C 0.312 3.688 7 O -0.471 6.471 8 N -0.353 5.353 9 C -0.020 4.020 10 C -0.173 4.173 11 C 0.023 3.977 12 H 0.107 0.893 13 N -0.331 5.331 14 C -0.078 4.078 15 C 0.323 3.677 16 O -0.439 6.439 17 C -0.256 4.256 18 S 0.047 5.953 19 C -0.675 4.675 20 H 0.082 0.918 21 C -0.158 4.158 22 N -0.553 5.553 23 Si 0.735 3.265 24 H -0.186 1.186 25 H -0.184 1.184 26 H -0.163 1.163 27 C -0.024 4.024 28 H 0.111 0.889 29 H 0.128 0.872 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.130 0.870 36 H 0.141 0.859 37 H 0.107 0.893 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.123 0.877 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.125 0.875 44 H 0.136 0.864 45 H 0.129 0.871 46 H 0.086 0.914 47 H 0.104 0.896 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.376 31.430 10.477 34.717 hybrid contribution 1.175 -0.904 -0.044 1.483 sum -9.200 30.526 10.433 33.546 Atomic orbital electron populations 1.23895 0.95285 1.02397 1.01859 1.21781 0.95511 0.95548 1.00194 1.20919 1.00473 0.93549 1.02753 1.20346 1.00263 0.94629 0.95604 1.21618 1.01677 0.93036 0.99267 1.21142 0.78530 0.87677 0.81410 1.90714 1.59260 1.64486 1.32592 1.48516 1.55880 1.23281 1.07585 1.22313 1.02647 0.97885 0.79126 1.23052 1.04160 0.91718 0.98329 1.22166 0.91509 0.91534 0.92490 0.89262 1.47598 1.09270 1.14789 1.61452 1.22172 0.79310 1.02864 1.03477 1.20069 0.88972 0.81822 0.76813 1.90683 1.22649 1.73963 1.56634 1.23282 1.00380 0.96885 1.05011 1.84754 1.14387 1.14956 1.81194 1.22438 0.93144 1.04788 1.47153 0.91784 1.25528 1.00257 0.96724 0.93302 1.70012 1.29418 1.14962 1.40955 0.85892 0.80481 0.79207 0.80952 1.18571 1.18412 1.16295 1.22402 0.97469 0.86271 0.96209 0.88883 0.87221 0.91208 0.91661 0.90409 0.91612 0.92533 0.87038 0.85938 0.89323 0.87555 0.88614 0.87745 0.91429 0.89901 0.87548 0.86438 0.87113 0.91378 0.89567 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.07 13.90 67.78 0.94 -1.13 16 2 C -0.13 -1.40 5.31 -16.48 -0.09 -1.49 16 3 C -0.12 -0.88 10.12 71.24 0.72 -0.16 16 4 C -0.07 -1.00 4.67 29.85 0.14 -0.86 16 5 C -0.12 -1.28 4.87 29.85 0.15 -1.13 16 6 C 0.52 10.18 7.85 87.66 0.69 10.86 16 7 O -0.59 -17.46 16.24 -3.05 -0.05 -17.51 16 8 N -0.62 -10.06 3.32 -811.34 -2.70 -12.76 16 9 C 0.10 0.82 6.49 86.73 0.56 1.39 16 10 C -0.13 -1.44 6.50 31.78 0.21 -1.24 16 11 C 0.13 2.56 3.47 46.46 0.16 2.72 16 12 H 0.09 2.36 7.02 -2.39 -0.02 2.34 16 13 N -0.60 -13.76 2.91 -814.43 -2.37 -16.13 16 14 C 0.06 0.93 8.91 127.77 1.14 2.07 16 15 C 0.54 18.13 7.69 87.66 0.67 18.81 16 16 O -0.56 -23.75 15.24 -3.03 -0.05 -23.79 16 17 C -0.10 -3.86 4.71 71.24 0.34 -3.53 16 18 S -0.18 -9.01 18.55 -56.49 -1.05 -10.06 16 19 C -0.53 -30.42 10.04 67.95 0.68 -29.74 16 20 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 21 C 0.05 2.77 5.50 84.86 0.47 3.23 16 22 N -0.92 -55.36 13.97 21.65 0.30 -55.06 16 23 Si 0.91 44.90 27.74 68.60 1.90 46.80 16 24 H -0.26 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 26 H -0.24 -11.82 6.74 99.48 0.67 -11.15 16 27 C 0.10 2.01 6.47 86.93 0.56 2.57 16 28 H 0.09 1.04 7.99 -2.91 -0.02 1.01 16 29 H 0.11 0.87 7.83 -2.91 -0.02 0.85 16 30 H 0.07 0.40 7.78 -2.39 -0.02 0.38 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.07 1.07 8.10 -2.39 -0.02 1.06 16 34 H 0.06 1.02 7.94 -2.39 -0.02 1.00 16 35 H 0.11 0.88 8.14 -2.38 -0.02 0.87 16 36 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.10 0.75 6.32 -2.39 -0.02 0.74 16 41 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 42 H 0.08 1.25 6.44 -2.39 -0.02 1.23 16 43 H 0.11 0.87 6.32 -2.39 -0.02 0.86 16 44 H 0.12 3.87 7.40 -2.39 -0.02 3.86 16 45 H 0.11 3.81 8.11 -2.39 -0.02 3.79 16 46 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 47 H 0.09 1.50 7.05 -2.39 -0.02 1.49 16 48 H 0.05 1.37 8.03 -2.38 -0.02 1.35 16 Total: -1.00 -81.02 403.18 4.23 -76.79 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 0.90 Total: 9.33 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 7.34 Total: 2.39 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -4.76 Total: -83.94 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -0.10 Total: -41.31 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.90 Total: 46.80 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.05 Total: -10.06 kcal Total: -81.02 4.23 -76.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687220609.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.898 kcal (2) G-P(sol) polarization free energy of solvation -81.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds