Wall clock time and date at job start Sat Apr 11 2020 06:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50695 * 120.00089 * 2 1 4 4 C 1.50698 * 119.99924 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.47435 * 95.00066 * 4 2 1 6 6 C 1.50698 * 109.47435 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99891 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99925 * 179.97438 * 6 5 4 9 9 C 1.47018 * 125.65358 * 359.97429 * 8 6 5 10 10 C 1.54323 * 107.27468 * 178.96346 * 9 8 6 11 11 C 1.55157 * 102.94171 * 337.80379 * 10 9 8 12 12 H 1.09003 * 111.00590 * 277.39246 * 11 10 9 13 13 N 1.46504 * 111.00396 * 153.57678 * 11 10 9 14 14 C 1.46497 * 119.99898 * 301.45691 * 13 11 10 15 15 C 1.34771 * 119.99670 * 121.45253 * 13 11 10 16 16 O 1.21284 * 120.00353 * 0.02562 * 15 13 11 17 17 C 1.50703 * 119.99952 * 179.97438 * 15 13 11 18 18 S 1.80990 * 109.47384 * 180.02562 * 17 15 13 19 19 C 1.76199 * 100.00278 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99888 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00452 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00292 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99660 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 269.99524 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99704 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99697 * 23 21 19 27 27 C 1.47430 * 125.64646 * 179.97438 * 8 6 5 28 28 H 1.07999 * 119.99921 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.00164 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47688 * 270.00611 * 3 2 1 31 31 H 1.09003 * 109.47250 * 30.00461 * 3 2 1 32 32 H 1.09001 * 109.47531 * 150.00037 * 3 2 1 33 33 H 1.08994 * 109.47188 * 334.99593 * 4 2 1 34 34 H 1.09005 * 109.46946 * 214.99670 * 4 2 1 35 35 H 1.09002 * 109.47556 * 59.99368 * 5 4 2 36 36 H 1.09005 * 109.46730 * 299.99736 * 5 4 2 37 37 H 1.09000 * 109.88540 * 59.54204 * 9 8 6 38 38 H 1.09007 * 109.88005 * 298.37937 * 9 8 6 39 39 H 1.09002 * 110.71577 * 219.44683 * 10 9 8 40 40 H 1.08995 * 110.87169 * 96.24351 * 10 9 8 41 41 H 1.08997 * 109.47000 * 269.99835 * 14 13 11 42 42 H 1.08999 * 109.47159 * 29.99895 * 14 13 11 43 43 H 1.08996 * 109.46926 * 149.99671 * 14 13 11 44 44 H 1.09001 * 109.47050 * 59.99941 * 17 15 13 45 45 H 1.08999 * 109.47014 * 300.00996 * 17 15 13 46 46 H 0.96997 * 119.99773 * 180.02562 * 22 21 19 47 47 H 1.08994 * 110.36984 * 85.26773 * 27 8 6 48 48 H 1.09000 * 110.36781 * 322.94335 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4377 6 6 3.1803 -2.9887 -1.4384 7 8 3.4043 -3.5601 -0.3923 8 7 3.6048 -3.5212 -2.6014 9 6 3.4023 -2.9377 -3.9355 10 6 4.0788 -3.8785 -4.9547 11 6 5.1118 -4.6453 -4.0873 12 1 6.0239 -4.0623 -3.9593 13 7 5.4084 -5.9594 -4.6630 14 6 4.3295 -6.9284 -4.8707 15 6 6.6737 -6.2768 -5.0014 16 8 7.5669 -5.4747 -4.8290 17 6 6.9789 -7.6289 -5.5930 18 16 8.7516 -7.7506 -5.9372 19 6 8.8230 -9.3809 -6.6019 20 1 7.9214 -9.9694 -6.6869 21 6 10.0379 -9.9088 -7.0164 22 7 10.0911 -11.1265 -7.5135 23 14 11.5974 -8.8913 -6.8688 24 1 11.7964 -8.1068 -8.1140 25 1 12.7590 -9.7928 -6.6609 26 1 11.4768 -7.9651 -5.7143 27 6 4.3492 -4.7855 -2.7465 28 1 -0.5400 0.9353 0.0004 29 1 -0.5401 -0.9353 -0.0004 30 1 2.2451 1.6198 -1.0276 31 1 1.4745 2.0647 0.5139 32 1 3.0159 1.1748 0.5138 33 1 1.4386 -2.0856 0.4334 34 1 2.9742 -1.1991 0.5889 35 1 3.0523 -0.9028 -1.8718 36 1 1.5166 -1.7894 -2.0272 37 1 3.8608 -1.9499 -3.9816 38 1 2.3360 -2.8641 -4.1500 39 1 4.5801 -3.3054 -5.7348 40 1 3.3536 -4.5664 -5.3891 41 1 4.2193 -7.5462 -3.9795 42 1 3.3968 -6.3981 -5.0627 43 1 4.5696 -7.5619 -5.7246 44 1 6.4190 -7.7548 -6.5197 45 1 6.6918 -8.4077 -4.8865 46 1 10.9402 -11.4956 -7.8027 47 1 3.6600 -5.6288 -2.7887 48 1 5.0512 -4.9092 -1.9219 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687220610.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:40 Heat of formation + Delta-G solvation = -54.853522 kcal Electronic energy + Delta-G solvation = -26591.974351 eV Core-core repulsion = 22773.553242 eV Total energy + Delta-G solvation = -3818.421109 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.71583 -39.58094 -37.81907 -36.70274 -35.13548 -32.46276 -32.15586 -31.17291 -29.81760 -28.44268 -27.69909 -27.02201 -25.65885 -25.14991 -23.27151 -21.60302 -19.61898 -19.28976 -18.87159 -17.83838 -17.39169 -17.28800 -16.42495 -15.84033 -15.78889 -15.48740 -15.10845 -14.99387 -14.87791 -14.29580 -13.98071 -13.84470 -13.71536 -13.50029 -13.38808 -13.28932 -12.95579 -12.81677 -12.70146 -12.48956 -12.42779 -12.18631 -12.13092 -12.09363 -11.70067 -11.46044 -11.32658 -11.28374 -11.07058 -11.02859 -10.63447 -10.20570 -9.88450 -9.59306 -9.46413 -9.08600 -9.02582 -8.70585 -8.52739 -6.95337 -6.31211 -4.03475 1.75000 2.29755 2.40427 2.76439 2.80835 3.15625 3.31217 3.48804 3.55274 3.98887 4.16104 4.30897 4.37144 4.44050 4.51276 4.57321 4.60509 4.73564 4.76213 4.81125 4.88916 4.94348 5.06644 5.07888 5.09747 5.15262 5.18131 5.23618 5.29652 5.39961 5.43649 5.47636 5.52586 5.55805 5.60165 5.64545 5.71485 5.73256 5.80629 5.85974 5.95729 6.19997 6.42825 6.43554 7.12007 7.29526 7.82228 7.91696 8.31163 8.38966 9.14942 10.77934 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031514 B = 0.001794 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.269276 B =15605.945365 C =15864.439967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.072 4.072 5 C -0.128 4.128 6 C 0.528 3.472 7 O -0.537 6.537 8 N -0.619 5.619 9 C 0.103 3.897 10 C -0.146 4.146 11 C 0.132 3.868 12 H 0.118 0.882 13 N -0.613 5.613 14 C 0.074 3.926 15 C 0.535 3.465 16 O -0.515 6.515 17 C -0.121 4.121 18 S -0.143 6.143 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.096 3.904 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.271 0.729 47 H 0.074 0.926 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.836 21.493 9.224 31.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.125 4.125 3 C -0.179 4.179 4 C -0.110 4.110 5 C -0.168 4.168 6 C 0.317 3.683 7 O -0.414 6.414 8 N -0.355 5.355 9 C -0.020 4.020 10 C -0.184 4.184 11 C 0.027 3.973 12 H 0.136 0.864 13 N -0.348 5.348 14 C -0.069 4.069 15 C 0.323 3.677 16 O -0.389 6.389 17 C -0.271 4.271 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.112 4.112 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.027 4.027 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.081 0.919 47 H 0.092 0.908 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -20.299 22.240 10.037 31.740 hybrid contribution -0.471 -0.875 -0.465 1.097 sum -20.770 21.366 9.573 31.297 Atomic orbital electron populations 1.23732 0.95235 1.01931 1.02388 1.21770 0.95421 0.95660 0.99659 1.20893 1.00323 0.94456 1.02186 1.20455 1.01010 0.94370 0.95133 1.21607 1.01017 0.94654 0.99493 1.20434 0.79124 0.86766 0.81951 1.90735 1.57057 1.62982 1.30625 1.48422 1.56686 1.23930 1.06439 1.22050 1.00813 0.97551 0.81604 1.23056 0.98746 0.98737 0.97899 1.22076 0.99117 0.84966 0.91180 0.86438 1.47654 1.08020 1.15006 1.64145 1.21845 0.90245 0.92468 1.02389 1.20372 0.81289 0.88991 0.77017 1.90698 1.44703 1.50859 1.52652 1.23313 1.04094 0.95985 1.03708 1.84809 1.01510 1.22620 1.82700 1.22298 0.98893 0.98126 1.47608 0.89368 1.24705 0.98689 0.94559 0.93286 1.69936 1.26939 1.14655 1.40066 0.86742 0.82814 0.81194 0.81139 1.19210 1.19909 1.15930 1.22516 0.95434 0.86394 0.98379 0.88450 0.88441 0.91383 0.91837 0.91678 0.90491 0.90341 0.88709 0.88837 0.90813 0.90902 0.89110 0.89723 0.92288 0.91057 0.90089 0.88374 0.88332 0.91918 0.90831 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.13 13.89 29.01 0.40 -0.73 16 2 C -0.13 -0.78 5.31 -101.07 -0.54 -1.31 16 3 C -0.12 -0.62 10.03 36.00 0.36 -0.25 16 4 C -0.07 -0.53 4.67 -27.88 -0.13 -0.66 16 5 C -0.13 -0.85 4.87 -27.88 -0.14 -0.98 16 6 C 0.53 5.44 7.85 -10.99 -0.09 5.35 16 7 O -0.54 -7.75 16.24 5.55 0.09 -7.66 16 8 N -0.62 -5.66 3.33 -170.53 -0.57 -6.22 16 9 C 0.10 0.62 6.49 -3.07 -0.02 0.60 16 10 C -0.15 -1.05 6.51 -24.90 -0.16 -1.21 16 11 C 0.13 1.41 3.45 -65.79 -0.23 1.18 16 12 H 0.12 1.53 7.01 -51.93 -0.36 1.16 16 13 N -0.61 -7.56 2.91 -171.49 -0.50 -8.06 16 14 C 0.07 0.66 8.91 59.85 0.53 1.19 16 15 C 0.54 9.20 7.69 -10.99 -0.08 9.12 16 16 O -0.52 -10.74 15.24 5.55 0.08 -10.65 16 17 C -0.12 -2.26 4.71 36.01 0.17 -2.09 16 18 S -0.14 -3.56 18.55 -107.50 -1.99 -5.56 16 19 C -0.52 -14.82 10.04 30.94 0.31 -14.51 16 20 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 21 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 22 N -0.88 -26.29 13.97 55.49 0.78 -25.51 16 23 Si 0.86 21.61 27.74 -169.99 -4.71 16.90 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 26 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 27 C 0.10 1.01 6.47 -2.54 -0.02 0.99 16 28 H 0.10 0.47 8.04 -52.49 -0.42 0.05 16 29 H 0.10 0.54 7.99 -52.48 -0.42 0.12 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.28 8.06 -51.93 -0.42 -0.13 16 32 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.08 0.65 7.94 -51.93 -0.41 0.23 16 34 H 0.08 0.66 8.06 -51.93 -0.42 0.25 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.53 6.30 -51.93 -0.33 0.20 16 41 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 42 H 0.07 0.46 6.32 -51.93 -0.33 0.14 16 43 H 0.08 0.73 6.44 -51.93 -0.33 0.40 16 44 H 0.10 1.69 7.40 -51.92 -0.38 1.30 16 45 H 0.10 1.74 8.11 -51.92 -0.42 1.32 16 46 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.07 0.72 7.04 -51.93 -0.37 0.35 16 48 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 LS Contribution 403.43 15.07 6.08 6.08 Total: -1.00 -35.50 403.43 -8.45 -43.95 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -7.99 Total: -2.63 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 0.28 Total: -0.62 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: -0.29 Total: -39.79 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.17 Total: -18.32 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.90 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.50 -8.45 -43.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687220610.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.906 kcal (2) G-P(sol) polarization free energy of solvation -35.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds