Wall clock time and date at job start Sat Apr 11 2020 06:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50695 * 120.00089 * 2 1 4 4 C 1.50698 * 119.99924 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.47435 * 95.00066 * 4 2 1 6 6 C 1.50698 * 109.47435 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99891 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99925 * 179.97438 * 6 5 4 9 9 C 1.47018 * 125.65358 * 359.97429 * 8 6 5 10 10 C 1.54323 * 107.27468 * 178.96346 * 9 8 6 11 11 C 1.55157 * 102.94171 * 337.80379 * 10 9 8 12 12 H 1.09003 * 111.00590 * 277.39246 * 11 10 9 13 13 N 1.46504 * 111.00396 * 153.57678 * 11 10 9 14 14 C 1.46497 * 119.99898 * 301.45691 * 13 11 10 15 15 C 1.34771 * 119.99670 * 121.45253 * 13 11 10 16 16 O 1.21284 * 120.00353 * 0.02562 * 15 13 11 17 17 C 1.50703 * 119.99952 * 179.97438 * 15 13 11 18 18 S 1.80990 * 109.47384 * 180.02562 * 17 15 13 19 19 C 1.76199 * 100.00278 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99888 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00452 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00292 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99660 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 269.99524 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99704 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99697 * 23 21 19 27 27 C 1.47430 * 125.64646 * 179.97438 * 8 6 5 28 28 H 1.07999 * 119.99921 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.00164 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47688 * 270.00611 * 3 2 1 31 31 H 1.09003 * 109.47250 * 30.00461 * 3 2 1 32 32 H 1.09001 * 109.47531 * 150.00037 * 3 2 1 33 33 H 1.08994 * 109.47188 * 334.99593 * 4 2 1 34 34 H 1.09005 * 109.46946 * 214.99670 * 4 2 1 35 35 H 1.09002 * 109.47556 * 59.99368 * 5 4 2 36 36 H 1.09005 * 109.46730 * 299.99736 * 5 4 2 37 37 H 1.09000 * 109.88540 * 59.54204 * 9 8 6 38 38 H 1.09007 * 109.88005 * 298.37937 * 9 8 6 39 39 H 1.09002 * 110.71577 * 219.44683 * 10 9 8 40 40 H 1.08995 * 110.87169 * 96.24351 * 10 9 8 41 41 H 1.08997 * 109.47000 * 269.99835 * 14 13 11 42 42 H 1.08999 * 109.47159 * 29.99895 * 14 13 11 43 43 H 1.08996 * 109.46926 * 149.99671 * 14 13 11 44 44 H 1.09001 * 109.47050 * 59.99941 * 17 15 13 45 45 H 1.08999 * 109.47014 * 300.00996 * 17 15 13 46 46 H 0.96997 * 119.99773 * 180.02562 * 22 21 19 47 47 H 1.08994 * 110.36984 * 85.26773 * 27 8 6 48 48 H 1.09000 * 110.36781 * 322.94335 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4377 6 6 3.1803 -2.9887 -1.4384 7 8 3.4043 -3.5601 -0.3923 8 7 3.6048 -3.5212 -2.6014 9 6 3.4023 -2.9377 -3.9355 10 6 4.0788 -3.8785 -4.9547 11 6 5.1118 -4.6453 -4.0873 12 1 6.0239 -4.0623 -3.9593 13 7 5.4084 -5.9594 -4.6630 14 6 4.3295 -6.9284 -4.8707 15 6 6.6737 -6.2768 -5.0014 16 8 7.5669 -5.4747 -4.8290 17 6 6.9789 -7.6289 -5.5930 18 16 8.7516 -7.7506 -5.9372 19 6 8.8230 -9.3809 -6.6019 20 1 7.9214 -9.9694 -6.6869 21 6 10.0379 -9.9088 -7.0164 22 7 10.0911 -11.1265 -7.5135 23 14 11.5974 -8.8913 -6.8688 24 1 11.7964 -8.1068 -8.1140 25 1 12.7590 -9.7928 -6.6609 26 1 11.4768 -7.9651 -5.7143 27 6 4.3492 -4.7855 -2.7465 28 1 -0.5400 0.9353 0.0004 29 1 -0.5401 -0.9353 -0.0004 30 1 2.2451 1.6198 -1.0276 31 1 1.4745 2.0647 0.5139 32 1 3.0159 1.1748 0.5138 33 1 1.4386 -2.0856 0.4334 34 1 2.9742 -1.1991 0.5889 35 1 3.0523 -0.9028 -1.8718 36 1 1.5166 -1.7894 -2.0272 37 1 3.8608 -1.9499 -3.9816 38 1 2.3360 -2.8641 -4.1500 39 1 4.5801 -3.3054 -5.7348 40 1 3.3536 -4.5664 -5.3891 41 1 4.2193 -7.5462 -3.9795 42 1 3.3968 -6.3981 -5.0627 43 1 4.5696 -7.5619 -5.7246 44 1 6.4190 -7.7548 -6.5197 45 1 6.6918 -8.4077 -4.8865 46 1 10.9402 -11.4956 -7.8027 47 1 3.6600 -5.6288 -2.7887 48 1 5.0512 -4.9092 -1.9219 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001687220610.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:39 Heat of formation + Delta-G solvation = -77.478944 kcal Electronic energy + Delta-G solvation = -26592.955463 eV Core-core repulsion = 22773.553242 eV Total energy + Delta-G solvation = -3819.402221 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.59963 -40.66046 -38.73390 -37.26194 -36.20116 -34.67505 -32.94805 -31.89612 -30.81855 -29.44234 -28.10543 -27.90712 -27.83426 -25.86294 -23.90879 -22.56209 -20.55795 -20.22555 -19.65246 -19.36042 -18.52679 -18.10510 -17.36629 -17.12837 -16.84043 -16.68501 -16.58168 -15.99085 -15.50078 -15.44822 -14.95142 -14.83119 -14.65957 -14.51813 -14.42356 -14.28874 -13.96852 -13.66730 -13.62178 -13.39063 -13.36252 -13.18537 -13.02319 -13.01071 -12.82419 -12.58109 -12.53814 -12.51678 -11.98895 -11.87883 -11.85040 -11.71867 -11.17458 -11.05953 -10.97485 -10.53192 -9.93917 -9.90207 -9.64194 -9.00999 -8.51958 -6.22968 0.95109 1.28764 1.30486 1.41734 1.46045 1.50660 1.55667 1.78471 2.19000 2.24607 2.67584 2.86446 3.31115 3.40611 3.64848 3.69812 3.92114 3.97335 4.02875 4.08459 4.14155 4.18291 4.23466 4.29930 4.34854 4.43238 4.53389 4.61567 4.63181 4.69576 4.74946 4.80585 4.85794 4.87387 4.96250 5.01929 5.09337 5.10592 5.11814 5.17026 5.20537 5.48617 5.70371 5.76387 5.99410 6.11003 6.14880 6.41528 6.93418 7.01478 7.06300 8.60262 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031514 B = 0.001794 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.269276 B =15605.945365 C =15864.439967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.132 4.132 3 C -0.122 4.122 4 C -0.070 4.070 5 C -0.117 4.117 6 C 0.521 3.479 7 O -0.590 6.590 8 N -0.618 5.618 9 C 0.102 3.898 10 C -0.134 4.134 11 C 0.128 3.872 12 H 0.090 0.910 13 N -0.598 5.598 14 C 0.063 3.937 15 C 0.536 3.464 16 O -0.561 6.561 17 C -0.105 4.105 18 S -0.179 6.179 19 C -0.528 4.528 20 H 0.064 0.936 21 C 0.047 3.953 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.261 1.261 25 H -0.260 1.260 26 H -0.239 1.239 27 C 0.101 3.899 28 H 0.109 0.891 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.082 0.918 44 H 0.117 0.883 45 H 0.111 0.889 46 H 0.277 0.723 47 H 0.085 0.915 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.154 23.624 8.436 34.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.132 4.132 3 C -0.179 4.179 4 C -0.108 4.108 5 C -0.156 4.156 6 C 0.312 3.688 7 O -0.470 6.470 8 N -0.352 5.352 9 C -0.020 4.020 10 C -0.172 4.172 11 C 0.023 3.977 12 H 0.108 0.892 13 N -0.331 5.331 14 C -0.078 4.078 15 C 0.323 3.677 16 O -0.439 6.439 17 C -0.256 4.256 18 S 0.047 5.953 19 C -0.675 4.675 20 H 0.082 0.918 21 C -0.158 4.158 22 N -0.554 5.554 23 Si 0.735 3.265 24 H -0.186 1.186 25 H -0.184 1.184 26 H -0.163 1.163 27 C -0.024 4.024 28 H 0.127 0.873 29 H 0.116 0.884 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.108 0.892 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.122 0.878 41 H 0.086 0.914 42 H 0.124 0.876 43 H 0.101 0.899 44 H 0.136 0.864 45 H 0.129 0.871 46 H 0.086 0.914 47 H 0.103 0.897 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.678 24.378 9.223 34.549 hybrid contribution 0.064 -1.549 -0.167 1.559 sum -22.614 22.829 9.057 33.386 Atomic orbital electron populations 1.23862 0.95115 1.02542 1.01556 1.21754 0.95592 0.95371 1.00460 1.20914 1.00020 0.93980 1.02950 1.20384 1.00095 0.94798 0.95548 1.21619 1.01790 0.92839 0.99342 1.21144 0.78731 0.87525 0.81358 1.90713 1.59214 1.64565 1.32558 1.48516 1.55734 1.23401 1.07596 1.22308 1.02847 0.97626 0.79181 1.23051 0.97774 0.98764 0.97659 1.22118 0.99110 0.84068 0.92410 0.89229 1.47596 1.07029 1.16219 1.62265 1.22170 0.90331 0.92374 1.02946 1.20063 0.82558 0.87842 0.77195 1.90683 1.46459 1.51772 1.54983 1.23281 0.99301 0.97785 1.05208 1.84749 1.07746 1.20175 1.82583 1.22441 0.98146 0.99560 1.47387 0.91795 1.25529 1.01648 0.95568 0.93073 1.70012 1.28087 1.16072 1.41180 0.85892 0.79633 0.79906 0.81094 1.18566 1.18419 1.16283 1.22349 0.95213 0.87832 0.96967 0.87290 0.88426 0.90249 0.91226 0.92196 0.92027 0.92145 0.86661 0.86334 0.89190 0.87680 0.88555 0.87819 0.91442 0.87585 0.89888 0.86446 0.87126 0.91377 0.89691 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.84 13.89 67.78 0.94 -0.90 16 2 C -0.13 -1.42 5.31 -16.49 -0.09 -1.50 16 3 C -0.12 -1.01 10.03 71.23 0.71 -0.30 16 4 C -0.07 -1.00 4.67 29.85 0.14 -0.86 16 5 C -0.12 -1.28 4.87 29.85 0.15 -1.14 16 6 C 0.52 10.20 7.85 87.66 0.69 10.89 16 7 O -0.59 -17.48 16.24 -3.04 -0.05 -17.53 16 8 N -0.62 -10.08 3.33 -811.83 -2.70 -12.78 16 9 C 0.10 0.83 6.49 86.73 0.56 1.39 16 10 C -0.13 -1.45 6.51 31.78 0.21 -1.24 16 11 C 0.13 2.55 3.45 46.38 0.16 2.71 16 12 H 0.09 2.35 7.01 -2.39 -0.02 2.33 16 13 N -0.60 -13.77 2.91 -814.87 -2.37 -16.14 16 14 C 0.06 0.94 8.91 127.77 1.14 2.08 16 15 C 0.54 18.12 7.69 87.66 0.67 18.80 16 16 O -0.56 -23.68 15.24 -3.04 -0.05 -23.73 16 17 C -0.11 -3.87 4.71 71.24 0.34 -3.53 16 18 S -0.18 -8.99 18.55 -56.49 -1.05 -10.03 16 19 C -0.53 -30.43 10.04 67.95 0.68 -29.74 16 20 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 21 C 0.05 2.76 5.50 84.86 0.47 3.23 16 22 N -0.92 -55.36 13.97 21.65 0.30 -55.06 16 23 Si 0.91 44.87 27.74 68.60 1.90 46.77 16 24 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 26 H -0.24 -11.80 6.74 99.48 0.67 -11.13 16 27 C 0.10 2.01 6.47 86.85 0.56 2.58 16 28 H 0.11 0.78 8.04 -2.91 -0.02 0.76 16 29 H 0.10 0.91 7.99 -2.91 -0.02 0.88 16 30 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.49 8.06 -2.39 -0.02 0.47 16 32 H 0.06 0.55 8.08 -2.39 -0.02 0.53 16 33 H 0.06 1.04 7.94 -2.39 -0.02 1.02 16 34 H 0.06 1.06 8.06 -2.38 -0.02 1.04 16 35 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 39 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.10 0.77 6.30 -2.39 -0.02 0.75 16 41 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 42 H 0.11 0.89 6.32 -2.39 -0.02 0.88 16 43 H 0.08 1.26 6.44 -2.39 -0.02 1.24 16 44 H 0.12 3.87 7.40 -2.39 -0.02 3.85 16 45 H 0.11 3.81 8.11 -2.40 -0.02 3.79 16 46 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 47 H 0.08 1.50 7.04 -2.39 -0.02 1.48 16 48 H 0.05 1.38 8.04 -2.39 -0.02 1.36 16 Total: -1.00 -80.79 403.43 4.22 -76.57 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 0.90 Total: 9.46 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 7.33 Total: 2.46 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -4.77 Total: -83.98 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -0.10 Total: -41.26 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.90 Total: 46.77 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.05 Total: -10.03 kcal Total: -80.79 4.22 -76.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687220610.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.906 kcal (2) G-P(sol) polarization free energy of solvation -80.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds