Wall clock time and date at job start Sat Apr 11 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 119.99869 * 2 1 4 4 C 1.53007 * 109.47268 * 0.02562 * 3 2 1 5 5 C 1.52995 * 109.47316 * 240.00373 * 3 2 1 6 6 C 1.50704 * 109.47075 * 120.00094 * 3 2 1 7 7 O 1.21281 * 119.99805 * 350.91581 * 6 3 2 8 8 N 1.34772 * 120.00198 * 170.90771 * 6 3 2 9 9 C 1.43520 * 119.01652 * 184.22227 * 8 6 3 10 10 C 1.53799 * 107.93520 * 273.72795 * 9 8 6 11 11 C 1.47139 * 111.77442 * 281.55556 * 10 9 8 12 12 N 1.48212 * 110.34387 * 58.33784 * 11 10 9 13 13 C 1.34771 * 119.97248 * 102.45623 * 12 11 10 14 14 O 1.21283 * 120.00106 * 354.59447 * 13 12 11 15 15 C 1.50703 * 120.00029 * 174.58800 * 13 12 11 16 16 S 1.80993 * 109.47183 * 174.26760 * 15 13 12 17 17 C 1.76201 * 100.00032 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99955 * 0.02562 * 17 16 15 19 19 C 1.38803 * 120.00061 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00055 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00131 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47018 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47180 * 119.99787 * 21 19 17 24 24 H 1.48498 * 109.47288 * 240.00503 * 21 19 17 25 25 C 1.43627 * 120.05563 * 282.48169 * 12 11 10 26 26 C 1.48860 * 118.93873 * 4.22394 * 8 6 3 27 27 H 1.08005 * 120.00098 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.00029 * 179.97438 * 1 2 3 29 29 H 1.07991 * 119.99941 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47144 * 162.80969 * 4 3 2 31 31 H 1.09004 * 109.47009 * 282.80935 * 4 3 2 32 32 H 1.09002 * 109.46857 * 42.80946 * 4 3 2 33 33 H 1.09003 * 109.47341 * 300.00046 * 5 3 2 34 34 H 1.08997 * 109.47480 * 59.99789 * 5 3 2 35 35 H 1.09004 * 109.47317 * 180.02562 * 5 3 2 36 36 H 1.08999 * 109.84124 * 154.08139 * 9 8 6 37 37 H 1.08998 * 109.71689 * 33.29952 * 9 8 6 38 38 H 1.09004 * 109.00247 * 160.99345 * 10 9 8 39 39 H 1.08992 * 109.00607 * 42.12674 * 10 9 8 40 40 H 1.09000 * 109.32494 * 178.60076 * 11 10 9 41 41 H 1.09000 * 109.33087 * 298.06593 * 11 10 9 42 42 H 1.09002 * 109.46944 * 294.26762 * 15 13 12 43 43 H 1.08994 * 109.46884 * 54.26645 * 15 13 12 44 44 H 0.97001 * 120.00384 * 179.97438 * 20 19 17 45 45 H 1.08996 * 108.87258 * 211.45114 * 25 12 11 46 46 H 1.09003 * 108.87144 * 329.99102 * 25 12 11 47 47 H 1.09000 * 109.48435 * 20.63486 * 26 8 6 48 48 H 1.08998 * 109.48397 * 260.60238 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 1.0692 2.4681 0.0006 5 6 2.9430 1.3862 -1.2492 6 6 2.9299 1.3849 1.2305 7 8 2.8149 0.5556 2.1079 8 7 3.8326 2.3778 1.3558 9 6 4.7094 2.3822 2.4920 10 6 3.9847 3.0941 3.6468 11 6 4.0225 4.5572 3.4954 12 7 3.4017 4.9585 2.2107 13 6 2.1517 5.4620 2.1952 14 8 1.4988 5.4958 3.2168 15 6 1.5652 5.9832 0.9086 16 16 -0.1686 6.4304 1.1734 17 6 -0.5905 6.9902 -0.4431 18 1 0.1503 6.9792 -1.2289 19 6 -1.8753 7.4444 -0.7069 20 7 -2.7786 7.4565 0.2503 21 14 -2.3229 8.0373 -2.4209 22 1 -1.1388 7.9213 -3.3097 23 1 -3.4287 7.2053 -2.9594 24 1 -2.7568 9.4560 -2.3564 25 6 4.1310 4.8107 0.9822 26 6 3.8888 3.4363 0.3107 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8499 -0.9352 -0.0004 30 1 1.5794 3.3821 0.3044 31 1 0.6595 2.5964 -1.0013 32 1 0.2603 2.2541 0.6993 33 1 3.6514 0.5578 -1.2493 34 1 2.3164 1.3285 -2.1392 35 1 3.4883 2.3300 -1.2490 36 1 5.6279 2.9160 2.2484 37 1 4.9433 1.3572 2.7799 38 1 4.4634 2.8221 4.5876 39 1 2.9455 2.7662 3.6695 40 1 3.4780 5.0192 4.3189 41 1 5.0584 4.8955 3.5166 42 1 2.1220 6.8628 0.5855 43 1 1.6283 5.2114 0.1417 44 1 -3.6764 7.7742 0.0661 45 1 3.8252 5.5984 0.2937 46 1 5.1958 4.9176 1.1893 47 1 2.9453 3.4594 -0.2346 48 1 4.7033 3.2212 -0.3811 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687247330.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:44 Heat of formation + Delta-G solvation = -16.657063 kcal Electronic energy + Delta-G solvation = -29692.842310 eV Core-core repulsion = 25876.077524 eV Total energy + Delta-G solvation = -3816.764787 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.17670 -39.50021 -37.15197 -36.48141 -34.49560 -33.65207 -32.46915 -30.83384 -29.45715 -28.52360 -27.45284 -26.31733 -25.50084 -24.46651 -22.77715 -22.20139 -19.97814 -19.18296 -18.48033 -17.74628 -16.93279 -16.78140 -16.42140 -15.94666 -15.71133 -15.21882 -14.91338 -14.84328 -14.40299 -14.23003 -14.13905 -13.75358 -13.60260 -13.47967 -12.95062 -12.82257 -12.63244 -12.56762 -12.35868 -12.11400 -12.01407 -11.81928 -11.70116 -11.37372 -11.28601 -11.10870 -11.06145 -11.01588 -10.78854 -10.76917 -10.58420 -9.84003 -9.73609 -9.41885 -9.28969 -9.11355 -8.82726 -8.52777 -8.26339 -6.54698 -6.25625 -3.96614 2.27415 2.62776 2.77487 2.98006 3.04317 3.18170 3.23685 3.27685 3.53939 4.15818 4.31682 4.48513 4.58263 4.66485 4.73445 4.83707 4.89940 4.92534 5.06363 5.09769 5.13963 5.24642 5.28063 5.29287 5.34420 5.42717 5.47593 5.50520 5.60070 5.63221 5.67369 5.74981 5.81514 5.82767 5.91599 5.98361 6.00806 6.04565 6.19137 6.38417 6.52302 6.63017 6.65586 6.79465 7.22030 7.51762 7.55655 8.17047 8.30874 8.49903 9.19875 10.81703 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011294 B = 0.004331 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.706074 B = 6464.173919 C = 7822.141100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.129 4.129 3 C -0.055 4.055 4 C -0.159 4.159 5 C -0.158 4.158 6 C 0.527 3.473 7 O -0.534 6.534 8 N -0.602 5.602 9 C 0.123 3.877 10 C -0.158 4.158 11 C 0.121 3.879 12 N -0.611 5.611 13 C 0.532 3.468 14 O -0.510 6.510 15 C -0.155 4.155 16 S -0.057 6.057 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.075 3.925 20 N -0.866 5.866 21 Si 0.916 3.084 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.096 3.904 26 C 0.062 3.938 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.268 0.732 45 H 0.093 0.907 46 H 0.078 0.922 47 H 0.110 0.890 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.887 -10.218 -2.596 20.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.147 4.147 3 C -0.058 4.058 4 C -0.215 4.215 5 C -0.215 4.215 6 C 0.315 3.685 7 O -0.410 6.410 8 N -0.335 5.335 9 C -0.001 4.001 10 C -0.197 4.197 11 C -0.001 4.001 12 N -0.347 5.347 13 C 0.320 3.680 14 O -0.384 6.384 15 C -0.305 4.305 16 S 0.170 5.830 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.743 3.257 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.030 4.030 26 C -0.061 4.061 27 H 0.128 0.872 28 H 0.116 0.884 29 H 0.126 0.874 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.078 0.922 45 H 0.111 0.889 46 H 0.097 0.903 47 H 0.128 0.872 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 16.664 -10.633 -0.547 19.775 hybrid contribution 0.548 0.421 -2.293 2.395 sum 17.213 -10.213 -2.840 20.215 Atomic orbital electron populations 1.24104 0.96013 1.02619 0.99753 1.22372 0.95641 0.96082 1.00630 1.19874 0.95726 0.96418 0.93768 1.22317 0.99032 0.96084 1.04111 1.22350 0.99657 1.03364 0.96137 1.20562 0.79703 0.80354 0.87834 1.90670 1.67439 1.40764 1.42170 1.47612 1.36251 1.25387 1.24281 1.21024 0.92162 1.01519 0.85346 1.21517 1.03150 0.96062 0.98999 1.20620 0.97808 0.94941 0.86745 1.47554 1.15704 1.64628 1.06774 1.20385 0.80261 0.76579 0.90787 1.90703 1.58468 1.54387 1.34819 1.23667 1.06313 1.03343 0.97187 1.85500 0.98261 1.82761 1.16524 1.22872 0.99666 1.49725 0.96012 0.90917 1.24976 0.95298 0.95116 0.98061 1.70020 1.04010 1.43969 1.32152 0.86154 0.78538 0.78515 0.82518 1.19593 1.20565 1.20579 1.21619 0.97463 0.96468 0.87499 1.23789 1.04513 0.87248 0.90535 0.87172 0.88375 0.87372 0.90901 0.90522 0.90586 0.92283 0.91111 0.90216 0.90621 0.90056 0.90335 0.90676 0.89177 0.91331 0.89094 0.89628 0.92206 0.88887 0.90319 0.87207 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.36 13.68 29.01 0.40 -1.97 16 2 C -0.13 -1.64 8.02 -36.03 -0.29 -1.93 16 3 C -0.05 -0.67 0.72 -156.81 -0.11 -0.79 16 4 C -0.16 -2.20 6.99 37.16 0.26 -1.94 16 5 C -0.16 -1.45 7.96 37.16 0.30 -1.15 16 6 C 0.53 7.40 6.14 -10.99 -0.07 7.33 16 7 O -0.53 -9.33 15.57 5.56 0.09 -9.25 16 8 N -0.60 -6.76 2.50 -172.40 -0.43 -7.19 16 9 C 0.12 1.24 5.30 -5.20 -0.03 1.21 16 10 C -0.16 -1.82 5.64 -29.13 -0.16 -1.98 16 11 C 0.12 1.39 5.66 -5.91 -0.03 1.36 16 12 N -0.61 -7.98 2.46 -176.65 -0.43 -8.42 16 13 C 0.53 9.63 7.56 -10.99 -0.08 9.55 16 14 O -0.51 -11.47 15.35 5.55 0.09 -11.39 16 15 C -0.15 -2.92 4.46 36.01 0.16 -2.76 16 16 S -0.06 -1.48 20.58 -107.50 -2.21 -3.70 16 17 C -0.53 -14.49 9.50 30.94 0.29 -14.20 16 18 H 0.07 1.85 7.80 -52.49 -0.41 1.44 16 19 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 20 N -0.87 -25.49 13.22 55.49 0.73 -24.75 16 21 Si 0.92 20.69 29.55 -169.99 -5.02 15.67 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 25 C 0.10 0.88 4.97 -4.58 -0.02 0.85 16 26 C 0.06 0.55 4.24 -1.75 -0.01 0.55 16 27 H 0.11 1.46 5.57 -52.48 -0.29 1.16 16 28 H 0.10 1.07 8.06 -52.49 -0.42 0.65 16 29 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.07 1.05 3.14 -51.93 -0.16 0.89 16 31 H 0.08 0.98 8.02 -51.93 -0.42 0.56 16 32 H 0.08 1.21 6.33 -51.93 -0.33 0.88 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.61 3.81 -51.93 -0.20 0.41 16 36 H 0.08 0.55 7.58 -51.93 -0.39 0.16 16 37 H 0.08 0.89 7.47 -51.93 -0.39 0.50 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.20 7.85 -51.93 -0.41 0.79 16 40 H 0.09 1.23 7.19 -51.93 -0.37 0.86 16 41 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 42 H 0.09 1.59 7.83 -51.92 -0.41 1.19 16 43 H 0.09 1.44 5.35 -51.92 -0.28 1.16 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.09 0.82 6.49 -51.93 -0.34 0.48 16 46 H 0.08 0.51 7.72 -51.93 -0.40 0.11 16 47 H 0.11 1.10 2.61 -51.93 -0.14 0.96 16 48 H 0.08 0.49 7.32 -51.93 -0.38 0.11 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -35.49 375.88 -8.00 -43.49 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.98 Total: 3.77 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 0.50 Total: -3.91 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: -0.13 Total: -40.36 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: 0.17 Total: -20.64 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.49 -8.00 -43.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687247330.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.835 kcal (2) G-P(sol) polarization free energy of solvation -35.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds