Wall clock time and date at job start Sat Apr 11 2020 06:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50703 * 119.99898 * 2 1 4 4 C 1.31000 * 120.00120 * 180.02562 * 2 1 3 5 5 C 1.50703 * 119.99981 * 359.97438 * 4 2 1 6 6 C 1.50699 * 120.00120 * 179.97438 * 4 2 1 7 7 C 1.50698 * 109.47211 * 94.99673 * 6 4 2 8 8 O 1.21286 * 119.99933 * 359.97438 * 7 6 4 9 9 N 1.34775 * 120.00293 * 180.02562 * 7 6 4 10 10 C 1.47424 * 125.64548 * 0.02562 * 9 7 6 11 11 C 1.54913 * 104.82966 * 204.09438 * 10 9 7 12 12 C 1.55154 * 101.58391 * 322.98936 * 11 10 9 13 13 H 1.09003 * 110.72246 * 276.96462 * 12 11 10 14 14 N 1.46501 * 110.71811 * 153.86339 * 12 11 10 15 15 C 1.34771 * 119.99653 * 86.45965 * 14 12 11 16 16 O 1.21278 * 120.00276 * 359.97438 * 15 14 12 17 17 C 1.50706 * 119.99955 * 179.97438 * 15 14 12 18 18 S 1.80999 * 109.47145 * 179.97438 * 17 15 14 19 19 C 1.76201 * 99.99922 * 180.02562 * 18 17 15 20 20 H 1.07991 * 119.99888 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99763 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00436 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99921 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47017 * 59.99951 * 23 21 19 25 25 H 1.48499 * 109.47407 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46930 * 300.00068 * 23 21 19 27 27 C 1.47020 * 125.64949 * 179.72038 * 9 7 6 28 28 H 1.08995 * 109.47438 * 269.99592 * 1 2 3 29 29 H 1.09003 * 109.47550 * 30.00146 * 1 2 3 30 30 H 1.09007 * 109.47026 * 150.00291 * 1 2 3 31 31 H 1.08998 * 109.46985 * 239.99987 * 3 2 1 32 32 H 1.09000 * 109.47031 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.46714 * 119.99716 * 3 2 1 34 34 H 1.09002 * 109.47152 * 90.00152 * 5 4 2 35 35 H 1.09001 * 109.46980 * 330.00252 * 5 4 2 36 36 H 1.09004 * 109.47113 * 210.00233 * 5 4 2 37 37 H 1.08994 * 109.47377 * 214.99897 * 6 4 2 38 38 H 1.09004 * 109.46955 * 334.99880 * 6 4 2 39 39 H 1.08999 * 110.36894 * 322.92857 * 10 9 7 40 40 H 1.08993 * 110.37028 * 85.14722 * 10 9 7 41 41 H 1.09002 * 111.00451 * 81.07064 * 11 10 9 42 42 H 1.08999 * 111.00017 * 204.87600 * 11 10 9 43 43 H 0.96998 * 120.00112 * 266.45197 * 14 12 11 44 44 H 1.08997 * 109.47048 * 300.00063 * 17 15 14 45 45 H 1.08997 * 109.47224 * 59.99827 * 17 15 14 46 46 H 0.96997 * 120.00510 * 180.02562 * 22 21 19 47 47 H 1.08996 * 109.88133 * 298.38995 * 27 9 7 48 48 H 1.09002 * 109.88666 * 59.55329 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4085 -2.4396 -0.0005 6 6 3.6690 -1.1345 -0.0011 7 6 4.1719 -1.2585 1.4141 8 8 3.3841 -1.3386 2.3328 9 7 5.4970 -1.2795 1.6590 10 6 6.5603 -1.1893 0.6418 11 6 7.7935 -1.8602 1.2966 12 6 7.6502 -1.4028 2.7722 13 1 8.0660 -0.4045 2.9087 14 7 8.2947 -2.3587 3.6761 15 6 9.6098 -2.2468 3.9489 16 8 10.2597 -1.3551 3.4457 17 6 10.2727 -3.2299 4.8791 18 16 12.0276 -2.8176 5.0416 19 6 12.5391 -4.0887 6.1495 20 1 11.8229 -4.8132 6.5077 21 6 13.8624 -4.1580 6.5626 22 7 14.7353 -3.2747 6.1263 23 14 14.4047 -5.5051 7.7377 24 1 14.1514 -6.8319 7.1204 25 1 15.8551 -5.3604 8.0212 26 1 13.6386 -5.3944 9.0049 27 6 6.1216 -1.3899 2.9853 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8901 -0.5138 31 1 2.8871 1.3629 -0.8900 32 1 1.5521 2.1336 -0.0005 33 1 2.8871 1.3628 0.8900 34 1 1.2265 -2.7541 -1.0282 35 1 0.4563 -2.3094 0.5137 36 1 1.9978 -3.1994 0.5130 37 1 4.0321 -1.9761 -0.5908 38 1 4.0321 -0.2030 -0.4354 39 1 6.2694 -1.7282 -0.2599 40 1 6.7735 -0.1464 0.4074 41 1 7.7361 -2.9458 1.2166 42 1 8.7195 -1.4868 0.8593 43 1 7.7749 -3.0721 4.0783 44 1 9.7957 -3.1822 5.8580 45 1 10.1724 -4.2371 4.4749 46 1 15.6601 -3.3234 6.4147 47 1 5.8384 -0.5360 3.6006 48 1 5.8085 -2.3164 3.4667 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688005153.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:07 Heat of formation + Delta-G solvation = -67.136641 kcal Electronic energy + Delta-G solvation = -26430.649809 eV Core-core repulsion = 22611.696064 eV Total energy + Delta-G solvation = -3818.953745 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.62130 -39.38142 -37.99030 -36.96777 -34.20899 -32.45187 -31.74913 -31.00983 -29.99670 -29.57833 -28.18309 -26.73228 -25.50168 -24.40418 -23.39007 -21.59412 -20.52637 -19.70511 -17.94478 -17.52382 -17.24431 -16.93794 -16.27944 -15.86308 -15.71732 -15.21272 -14.97768 -14.82369 -14.65367 -14.44698 -14.08105 -13.89861 -13.71327 -13.27862 -13.15578 -13.06665 -12.78454 -12.67511 -12.62434 -12.49243 -12.40310 -12.28648 -12.10158 -12.01453 -11.67742 -11.62646 -11.17150 -11.07370 -11.06401 -11.05115 -10.78893 -10.17914 -9.85275 -9.50618 -9.11189 -9.06398 -8.94292 -8.80221 -8.27956 -6.53121 -6.23841 -3.94877 1.71473 2.35529 2.58381 2.98344 3.03791 3.22281 3.26443 3.29876 3.65738 4.06674 4.18435 4.26821 4.31410 4.50356 4.60162 4.71254 4.78893 4.86892 4.93528 4.94760 5.01671 5.10959 5.11497 5.12279 5.19058 5.21680 5.33529 5.37736 5.42333 5.48499 5.51494 5.57205 5.60340 5.62458 5.64502 5.74823 5.75265 5.83460 5.85870 5.95049 6.10146 6.30150 6.51081 6.65010 7.14869 7.56856 7.59075 7.87576 8.32806 8.50785 9.21522 10.83497 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.035764 B = 0.001650 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.728933 B =16963.493883 C =17300.485847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.120 4.120 5 C -0.111 4.111 6 C -0.100 4.100 7 C 0.532 3.468 8 O -0.531 6.531 9 N -0.621 5.621 10 C 0.099 3.901 11 C -0.146 4.146 12 C 0.138 3.862 13 H 0.105 0.895 14 N -0.731 5.731 15 C 0.536 3.464 16 O -0.514 6.514 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.075 3.925 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.104 3.896 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.400 0.600 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.269 0.731 47 H 0.077 0.923 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.268 4.516 -15.518 30.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.124 4.124 3 C -0.174 4.174 4 C -0.121 4.121 5 C -0.168 4.168 6 C -0.140 4.140 7 C 0.321 3.679 8 O -0.407 6.407 9 N -0.356 5.356 10 C -0.024 4.024 11 C -0.185 4.185 12 C 0.032 3.968 13 H 0.123 0.877 14 N -0.385 5.385 15 C 0.322 3.678 16 O -0.388 6.388 17 C -0.305 4.305 18 S 0.168 5.832 19 C -0.686 4.686 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.019 4.019 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.235 0.765 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.079 0.921 47 H 0.095 0.905 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -25.498 6.038 -15.861 30.630 hybrid contribution -0.482 -2.269 1.544 2.786 sum -25.980 3.769 -14.317 29.902 Atomic orbital electron populations 1.20863 0.92081 1.02223 1.02115 1.21396 0.95803 0.94428 1.00797 1.20838 0.99971 0.94933 1.01708 1.20776 0.92918 0.95223 1.03151 1.20763 1.00009 0.94707 1.01318 1.20678 0.94460 1.04753 0.94089 1.20305 0.80043 0.76130 0.91448 1.90727 1.54264 1.49206 1.46473 1.48481 1.05234 1.73647 1.08282 1.22410 0.86865 1.01313 0.91836 1.23251 0.98055 1.01662 0.95519 1.21817 0.90682 0.95065 0.89265 0.87720 1.45975 1.10081 1.32862 1.49632 1.20331 0.80938 0.85411 0.81086 1.90703 1.63001 1.34023 1.51073 1.23540 1.05597 1.00741 1.00607 1.85377 0.94797 1.41514 1.61526 1.22828 0.97536 1.15909 1.32280 0.90948 1.24983 0.95466 0.96622 0.96421 1.69998 1.03641 1.34160 1.42476 0.86226 0.77645 0.81108 0.80535 1.19939 1.20789 1.19925 1.22063 0.91621 1.02940 0.85309 0.91372 0.92067 0.91613 0.91583 0.91982 0.91791 0.91788 0.91534 0.92077 0.88415 0.88195 0.90153 0.90675 0.90018 0.88692 0.76535 0.89100 0.89133 0.92100 0.90474 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 9.07 36.00 0.33 -0.43 16 2 C -0.12 -0.98 6.05 -101.07 -0.61 -1.59 16 3 C -0.12 -0.81 8.69 36.01 0.31 -0.50 16 4 C -0.12 -0.99 4.55 -101.07 -0.46 -1.45 16 5 C -0.11 -0.83 9.14 36.01 0.33 -0.50 16 6 C -0.10 -0.73 4.45 -29.04 -0.13 -0.86 16 7 C 0.53 5.52 7.84 -10.99 -0.09 5.43 16 8 O -0.53 -7.57 16.36 5.55 0.09 -7.48 16 9 N -0.62 -5.66 3.33 -170.51 -0.57 -6.23 16 10 C 0.10 0.68 6.69 -2.53 -0.02 0.66 16 11 C -0.15 -1.30 6.77 -24.58 -0.17 -1.46 16 12 C 0.14 1.46 3.23 -66.09 -0.21 1.25 16 13 H 0.10 1.26 7.69 -51.93 -0.40 0.86 16 14 N -0.73 -8.94 5.21 -52.02 -0.27 -9.21 16 15 C 0.54 9.34 7.85 -10.98 -0.09 9.25 16 16 O -0.51 -10.91 15.59 5.56 0.09 -10.82 16 17 C -0.15 -2.99 6.16 36.01 0.22 -2.76 16 18 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 19 C -0.54 -15.11 9.50 30.94 0.29 -14.81 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -25.87 13.22 55.49 0.73 -25.13 16 23 Si 0.92 21.20 29.55 -169.99 -5.02 16.17 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C 0.10 1.01 6.63 -3.06 -0.02 0.99 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.33 8.05 -51.93 -0.42 -0.09 16 30 H 0.06 0.38 6.55 -51.93 -0.34 0.04 16 31 H 0.07 0.36 7.38 -51.93 -0.38 -0.02 16 32 H 0.06 0.37 7.94 -51.93 -0.41 -0.04 16 33 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.49 6.55 -51.93 -0.34 0.15 16 36 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 37 H 0.10 0.55 7.85 -51.93 -0.41 0.14 16 38 H 0.10 0.58 6.26 -51.93 -0.33 0.25 16 39 H 0.08 0.40 7.48 -51.93 -0.39 0.01 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.40 3.89 8.32 -40.82 -0.34 3.55 16 44 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 45 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 46 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 47 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.07 0.72 7.69 -51.93 -0.40 0.32 16 LS Contribution 406.44 15.07 6.12 6.12 Total: -1.00 -35.71 406.44 -9.36 -45.07 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -7.92 Total: 0.05 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -0.40 Total: -4.78 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: -0.10 Total: -40.57 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.18 Total: -18.30 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.71 -9.36 -45.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688005153.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.068 kcal (2) G-P(sol) polarization free energy of solvation -35.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds