Wall clock time and date at job start Sat Apr 11 2020 06:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50703 * 119.99898 * 2 1 4 4 C 1.31000 * 120.00120 * 180.02562 * 2 1 3 5 5 C 1.50703 * 119.99981 * 359.97438 * 4 2 1 6 6 C 1.50699 * 120.00120 * 179.97438 * 4 2 1 7 7 C 1.50698 * 109.47211 * 94.99673 * 6 4 2 8 8 O 1.21286 * 119.99933 * 359.97438 * 7 6 4 9 9 N 1.34775 * 120.00293 * 180.02562 * 7 6 4 10 10 C 1.47424 * 125.64548 * 0.02562 * 9 7 6 11 11 C 1.54913 * 104.82966 * 204.09438 * 10 9 7 12 12 C 1.55154 * 101.58391 * 322.98936 * 11 10 9 13 13 H 1.09003 * 110.72246 * 276.96462 * 12 11 10 14 14 N 1.46501 * 110.71811 * 153.86339 * 12 11 10 15 15 C 1.34771 * 119.99653 * 86.45965 * 14 12 11 16 16 O 1.21278 * 120.00276 * 359.97438 * 15 14 12 17 17 C 1.50706 * 119.99955 * 179.97438 * 15 14 12 18 18 S 1.80999 * 109.47145 * 179.97438 * 17 15 14 19 19 C 1.76201 * 99.99922 * 180.02562 * 18 17 15 20 20 H 1.07991 * 119.99888 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99763 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00436 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99921 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47017 * 59.99951 * 23 21 19 25 25 H 1.48499 * 109.47407 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46930 * 300.00068 * 23 21 19 27 27 C 1.47020 * 125.64949 * 179.72038 * 9 7 6 28 28 H 1.08995 * 109.47438 * 269.99592 * 1 2 3 29 29 H 1.09003 * 109.47550 * 30.00146 * 1 2 3 30 30 H 1.09007 * 109.47026 * 150.00291 * 1 2 3 31 31 H 1.08998 * 109.46985 * 239.99987 * 3 2 1 32 32 H 1.09000 * 109.47031 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.46714 * 119.99716 * 3 2 1 34 34 H 1.09002 * 109.47152 * 90.00152 * 5 4 2 35 35 H 1.09001 * 109.46980 * 330.00252 * 5 4 2 36 36 H 1.09004 * 109.47113 * 210.00233 * 5 4 2 37 37 H 1.08994 * 109.47377 * 214.99897 * 6 4 2 38 38 H 1.09004 * 109.46955 * 334.99880 * 6 4 2 39 39 H 1.08999 * 110.36894 * 322.92857 * 10 9 7 40 40 H 1.08993 * 110.37028 * 85.14722 * 10 9 7 41 41 H 1.09002 * 111.00451 * 81.07064 * 11 10 9 42 42 H 1.08999 * 111.00017 * 204.87600 * 11 10 9 43 43 H 0.96998 * 120.00112 * 266.45197 * 14 12 11 44 44 H 1.08997 * 109.47048 * 300.00063 * 17 15 14 45 45 H 1.08997 * 109.47224 * 59.99827 * 17 15 14 46 46 H 0.96997 * 120.00510 * 180.02562 * 22 21 19 47 47 H 1.08996 * 109.88133 * 298.38995 * 27 9 7 48 48 H 1.09002 * 109.88666 * 59.55329 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4085 -2.4396 -0.0005 6 6 3.6690 -1.1345 -0.0011 7 6 4.1719 -1.2585 1.4141 8 8 3.3841 -1.3386 2.3328 9 7 5.4970 -1.2795 1.6590 10 6 6.5603 -1.1893 0.6418 11 6 7.7935 -1.8602 1.2966 12 6 7.6502 -1.4028 2.7722 13 1 8.0660 -0.4045 2.9087 14 7 8.2947 -2.3587 3.6761 15 6 9.6098 -2.2468 3.9489 16 8 10.2597 -1.3551 3.4457 17 6 10.2727 -3.2299 4.8791 18 16 12.0276 -2.8176 5.0416 19 6 12.5391 -4.0887 6.1495 20 1 11.8229 -4.8132 6.5077 21 6 13.8624 -4.1580 6.5626 22 7 14.7353 -3.2747 6.1263 23 14 14.4047 -5.5051 7.7377 24 1 14.1514 -6.8319 7.1204 25 1 15.8551 -5.3604 8.0212 26 1 13.6386 -5.3944 9.0049 27 6 6.1216 -1.3899 2.9853 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8901 -0.5138 31 1 2.8871 1.3629 -0.8900 32 1 1.5521 2.1336 -0.0005 33 1 2.8871 1.3628 0.8900 34 1 1.2265 -2.7541 -1.0282 35 1 0.4563 -2.3094 0.5137 36 1 1.9978 -3.1994 0.5130 37 1 4.0321 -1.9761 -0.5908 38 1 4.0321 -0.2030 -0.4354 39 1 6.2694 -1.7282 -0.2599 40 1 6.7735 -0.1464 0.4074 41 1 7.7361 -2.9458 1.2166 42 1 8.7195 -1.4868 0.8593 43 1 7.7749 -3.0721 4.0783 44 1 9.7957 -3.1822 5.8580 45 1 10.1724 -4.2371 4.4749 46 1 15.6601 -3.3234 6.4147 47 1 5.8384 -0.5360 3.6006 48 1 5.8085 -2.3164 3.4667 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688005153.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:06 Heat of formation + Delta-G solvation = -90.477519 kcal Electronic energy + Delta-G solvation = -26431.661946 eV Core-core repulsion = 22611.696064 eV Total energy + Delta-G solvation = -3819.965882 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.46899 -40.54615 -38.83322 -37.72228 -35.33899 -34.57907 -32.58158 -31.78181 -30.71056 -30.57251 -29.14429 -27.67333 -27.30967 -25.04716 -24.05762 -22.59295 -21.69774 -20.46636 -19.84372 -18.30850 -18.16396 -17.79428 -17.40087 -16.87434 -16.82145 -16.51060 -16.37141 -15.99514 -15.72503 -15.19881 -15.08470 -14.78598 -14.69286 -14.54348 -14.39515 -13.92089 -13.67301 -13.57922 -13.44366 -13.22982 -13.16676 -13.04642 -12.96852 -12.86681 -12.85228 -12.69485 -12.62521 -12.56929 -12.17944 -11.94552 -11.74267 -11.59780 -11.12613 -11.04205 -10.96258 -10.27862 -10.18573 -9.75019 -9.36810 -8.65518 -8.34239 -6.11913 1.10906 1.26509 1.43964 1.45949 1.55296 1.58176 1.59824 1.89961 2.27516 2.37103 2.99959 3.27885 3.32988 3.54023 3.73616 3.89141 3.93630 4.01786 4.02975 4.15933 4.20943 4.25882 4.31209 4.40543 4.50510 4.52251 4.56669 4.62066 4.69323 4.72560 4.76870 4.83133 4.87119 4.96268 4.99692 5.04187 5.06337 5.10462 5.13996 5.19858 5.20677 5.42213 5.43288 5.75939 6.09508 6.19970 6.39797 6.46788 7.07297 7.10961 7.20014 8.74542 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.035764 B = 0.001650 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.728933 B =16963.493883 C =17300.485847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.135 4.135 3 C -0.117 4.117 4 C -0.136 4.136 5 C -0.110 4.110 6 C -0.095 4.095 7 C 0.529 3.471 8 O -0.577 6.577 9 N -0.619 5.619 10 C 0.103 3.897 11 C -0.141 4.141 12 C 0.137 3.863 13 H 0.090 0.910 14 N -0.707 5.707 15 C 0.541 3.459 16 O -0.558 6.558 17 C -0.132 4.132 18 S -0.146 6.146 19 C -0.549 4.549 20 H 0.082 0.918 21 C 0.015 3.985 22 N -0.910 5.910 23 Si 0.996 3.004 24 H -0.262 1.262 25 H -0.279 1.279 26 H -0.263 1.263 27 C 0.110 3.890 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.416 0.584 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.271 0.729 47 H 0.070 0.930 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.789 3.301 -16.460 32.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.135 4.135 3 C -0.173 4.173 4 C -0.137 4.137 5 C -0.167 4.167 6 C -0.134 4.134 7 C 0.320 3.680 8 O -0.456 6.456 9 N -0.354 5.354 10 C -0.019 4.019 11 C -0.180 4.180 12 C 0.031 3.969 13 H 0.108 0.892 14 N -0.361 5.361 15 C 0.327 3.673 16 O -0.435 6.435 17 C -0.283 4.283 18 S 0.081 5.919 19 C -0.697 4.697 20 H 0.100 0.900 21 C -0.190 4.190 22 N -0.546 5.546 23 Si 0.818 3.182 24 H -0.187 1.187 25 H -0.204 1.204 26 H -0.188 1.188 27 C -0.014 4.014 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.128 0.872 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.253 0.747 44 H 0.126 0.874 45 H 0.129 0.871 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -27.059 4.808 -16.826 32.225 hybrid contribution -0.137 -1.850 1.799 2.584 sum -27.196 2.958 -15.027 31.212 Atomic orbital electron populations 1.20889 0.91476 1.03161 1.01847 1.21679 0.96576 0.94833 1.00437 1.20845 1.00079 0.94774 1.01644 1.20997 0.93632 0.95530 1.03531 1.20763 0.99522 0.94240 1.02161 1.20728 0.93928 1.06594 0.92176 1.20875 0.79811 0.75055 0.92258 1.90707 1.55419 1.51460 1.48047 1.48542 1.05476 1.72931 1.08426 1.22553 0.84988 1.02458 0.91891 1.23194 0.98825 1.02043 0.93979 1.21881 0.90928 0.93946 0.90130 0.89175 1.45689 1.08321 1.33127 1.48951 1.19967 0.82246 0.84464 0.80608 1.90695 1.64383 1.35633 1.52792 1.23386 1.00318 1.02200 1.02413 1.85518 1.01603 1.42790 1.61976 1.23185 0.98213 1.16019 1.32303 0.89980 1.26086 0.95481 0.99186 0.98205 1.70162 1.04047 1.36328 1.44103 0.85036 0.77222 0.77833 0.78108 1.18682 1.20382 1.18809 1.21914 0.90713 1.02791 0.85999 0.92181 0.90949 0.90932 0.89959 0.91324 0.93385 0.90084 0.91991 0.93185 0.86174 0.86386 0.87233 0.89267 0.89612 0.89511 0.74691 0.87352 0.87122 0.91982 0.91169 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 9.07 71.24 0.65 -0.75 16 2 C -0.14 -1.96 6.05 -16.49 -0.10 -2.06 16 3 C -0.12 -1.43 8.69 71.24 0.62 -0.81 16 4 C -0.14 -2.03 4.55 -16.49 -0.07 -2.11 16 5 C -0.11 -1.51 9.14 71.24 0.65 -0.86 16 6 C -0.10 -1.16 4.45 29.10 0.13 -1.03 16 7 C 0.53 10.18 7.84 87.66 0.69 10.87 16 8 O -0.58 -16.25 16.36 -3.05 -0.05 -16.30 16 9 N -0.62 -10.09 3.33 -811.77 -2.70 -12.79 16 10 C 0.10 1.12 6.69 86.86 0.58 1.70 16 11 C -0.14 -2.25 6.77 31.99 0.22 -2.03 16 12 C 0.14 2.74 3.23 46.18 0.15 2.89 16 13 H 0.09 2.14 7.69 -2.39 -0.02 2.13 16 14 N -0.71 -16.30 5.21 -436.89 -2.27 -18.57 16 15 C 0.54 18.57 7.85 87.66 0.69 19.26 16 16 O -0.56 -24.02 15.59 -3.02 -0.05 -24.07 16 17 C -0.13 -5.01 6.16 71.24 0.44 -4.57 16 18 S -0.15 -7.91 20.57 -56.49 -1.16 -9.08 16 19 C -0.55 -30.97 9.50 67.95 0.65 -30.33 16 20 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 21 C 0.02 0.87 5.49 84.86 0.47 1.33 16 22 N -0.91 -55.29 13.22 21.65 0.29 -55.01 16 23 Si 1.00 43.16 29.55 68.60 2.03 45.19 16 24 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 25 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 26 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 27 C 0.11 2.00 6.63 86.73 0.57 2.57 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.67 8.05 -2.39 -0.02 0.65 16 30 H 0.07 0.74 6.55 -2.38 -0.02 0.73 16 31 H 0.08 0.71 7.38 -2.39 -0.02 0.69 16 32 H 0.07 0.72 7.94 -2.39 -0.02 0.71 16 33 H 0.05 0.74 8.08 -2.39 -0.02 0.72 16 34 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.06 0.88 6.55 -2.39 -0.02 0.86 16 36 H 0.05 0.78 8.12 -2.38 -0.02 0.76 16 37 H 0.12 0.92 7.85 -2.39 -0.02 0.90 16 38 H 0.12 1.00 6.26 -2.39 -0.01 0.98 16 39 H 0.11 0.62 7.48 -2.39 -0.02 0.61 16 40 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.42 7.16 8.32 -92.71 -0.77 6.39 16 44 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 45 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 46 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 47 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.08 1.37 7.69 -2.39 -0.02 1.35 16 Total: -1.00 -80.09 406.44 2.58 -77.51 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.19 Total: 19.03 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 6.32 Total: -5.91 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -4.69 Total: -86.37 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -0.10 Total: -40.37 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -7.91 SS G_CDS: -1.16 Total: -9.08 kcal Total: -80.09 2.58 -77.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688005153.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.969 kcal (2) G-P(sol) polarization free energy of solvation -80.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds