Wall clock time and date at job start Sat Apr 11 2020 06:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50707 * 119.99972 * 2 1 4 4 C 1.53002 * 109.46888 * 0.02562 * 3 2 1 5 5 C 1.52996 * 109.47230 * 239.99834 * 3 2 1 6 6 C 1.52999 * 109.46871 * 120.00027 * 3 2 1 7 7 C 1.50699 * 109.47080 * 180.02562 * 6 3 2 8 8 O 1.21290 * 119.99829 * 0.02562 * 7 6 3 9 9 N 1.34778 * 120.00321 * 180.02562 * 7 6 3 10 10 C 1.46495 * 120.00037 * 180.02562 * 9 7 6 11 11 H 1.08998 * 112.85167 * 336.19310 * 10 9 7 12 12 C 1.54052 * 113.69874 * 107.46677 * 10 9 7 13 13 C 1.53781 * 86.98687 * 139.98728 * 12 10 9 14 14 H 1.09002 * 113.61445 * 89.16393 * 13 12 10 15 15 N 1.46497 * 113.61305 * 219.98100 * 13 12 10 16 16 C 1.34775 * 120.00126 * 254.13352 * 15 13 12 17 17 O 1.21286 * 119.99866 * 0.02562 * 16 15 13 18 18 C 1.50697 * 120.00136 * 180.02562 * 16 15 13 19 19 S 1.81002 * 109.47159 * 180.02562 * 18 16 15 20 20 C 1.76204 * 99.99989 * 179.97438 * 19 18 16 21 21 H 1.07996 * 119.99700 * 0.02562 * 20 19 18 22 22 C 1.38803 * 120.00033 * 179.97438 * 20 19 18 23 23 N 1.31627 * 119.99541 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00110 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47138 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47182 * 120.00061 * 24 22 20 27 27 H 1.48495 * 109.47387 * 240.00234 * 24 22 20 28 28 C 1.53783 * 113.61332 * 205.00239 * 10 9 7 29 29 H 1.07998 * 120.00171 * 0.02562 * 1 2 3 30 30 H 1.08000 * 119.99468 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.00171 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.46813 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.46659 * 299.99449 * 4 3 2 34 34 H 1.08998 * 109.47172 * 59.99560 * 4 3 2 35 35 H 1.08997 * 109.47361 * 300.00343 * 5 3 2 36 36 H 1.09004 * 109.46902 * 60.00285 * 5 3 2 37 37 H 1.09000 * 109.46880 * 179.97438 * 5 3 2 38 38 H 1.08996 * 109.47525 * 60.00164 * 6 3 2 39 39 H 1.09007 * 109.47286 * 299.99862 * 6 3 2 40 40 H 0.96995 * 119.99650 * 359.97438 * 9 7 6 41 41 H 1.08999 * 113.60931 * 25.48106 * 12 10 9 42 42 H 1.08998 * 113.69722 * 254.50188 * 12 10 9 43 43 H 0.97006 * 120.00058 * 74.13996 * 15 13 12 44 44 H 1.09012 * 109.47186 * 299.99920 * 18 16 15 45 45 H 1.09001 * 109.47748 * 59.99944 * 18 16 15 46 46 H 0.97002 * 119.99664 * 180.02562 * 23 22 20 47 47 H 1.08992 * 113.61796 * 105.38277 * 28 10 9 48 48 H 1.09005 * 113.68996 * 334.48889 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 6 1.0692 2.4681 0.0006 5 6 2.9432 1.3862 -1.2492 6 6 2.9431 1.3862 1.2492 7 6 3.6962 2.6915 1.2496 8 8 3.5439 3.4797 0.3404 9 7 4.5389 2.9832 2.2602 10 6 5.2704 4.2524 2.2608 11 1 5.3874 4.6740 1.2625 12 6 4.7540 5.2642 3.3013 13 6 6.2263 5.6211 3.5654 14 1 6.6046 6.4169 2.9237 15 7 6.5326 5.8381 4.9814 16 6 6.7342 7.0880 5.4435 17 8 6.6615 8.0332 4.6869 18 6 7.0498 7.3112 6.9000 19 16 7.2637 9.0822 7.2065 20 6 7.6122 9.0540 8.9335 21 1 7.6397 8.1134 9.4635 22 6 7.8523 10.2405 9.6126 23 7 7.8191 11.3868 8.9665 24 14 8.2223 10.2105 11.4433 25 1 8.2015 8.8075 11.9296 26 1 9.5641 10.7984 11.6868 27 1 7.1962 11.0016 12.1688 28 6 6.5785 4.2090 3.0682 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.6143 3.4120 0.0011 33 1 0.4424 2.4105 -0.8892 34 1 0.4429 2.4101 0.8908 35 1 3.6515 0.5578 -1.2492 36 1 2.3165 1.3285 -2.1392 37 1 3.4878 2.3304 -1.2494 38 1 3.6515 0.5577 1.2493 39 1 2.3165 1.3284 2.1393 40 1 4.6603 2.3530 2.9875 41 1 4.2577 4.7995 4.1533 42 1 4.1775 6.0818 2.8686 43 1 6.5905 5.0821 5.5866 44 1 6.2303 6.9334 7.5115 45 1 7.9684 6.7840 7.1578 46 1 7.9873 12.2160 9.4409 47 1 7.4738 4.1753 2.4476 48 1 6.5816 3.4566 3.8570 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688040453.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:11 Heat of formation + Delta-G solvation = -41.810563 kcal Electronic energy + Delta-G solvation = -26123.468675 eV Core-core repulsion = 22305.613151 eV Total energy + Delta-G solvation = -3817.855524 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.83472 -39.77533 -38.29652 -37.15947 -34.31292 -32.71100 -32.44165 -31.62221 -29.27656 -28.38744 -27.56658 -26.02569 -25.53089 -24.34221 -22.71683 -20.94356 -20.37816 -20.21239 -18.54332 -17.83328 -17.43531 -17.00903 -16.37696 -15.86664 -15.78912 -15.38155 -15.16362 -14.84971 -14.82020 -14.61469 -14.31406 -13.88945 -13.77094 -13.28015 -13.05673 -12.96363 -12.82164 -12.62285 -12.42207 -12.08414 -12.04938 -11.72977 -11.55730 -11.47333 -11.38965 -11.28053 -11.08745 -11.04461 -11.03265 -10.97973 -10.76268 -9.83800 -9.81486 -9.73533 -9.42889 -9.32052 -9.09155 -8.87783 -8.24746 -6.51574 -6.23255 -3.93862 1.87247 2.28797 2.76638 3.03286 3.07710 3.20347 3.27657 3.32537 3.72103 4.12341 4.18772 4.24454 4.29537 4.37277 4.52420 4.62610 4.67652 4.74981 4.87358 4.96646 5.10851 5.12130 5.12421 5.23651 5.32963 5.37673 5.40674 5.43590 5.50296 5.58731 5.62409 5.68643 5.68974 5.79667 5.82293 5.86480 5.93136 6.08718 6.11055 6.15490 6.21495 6.34399 6.41267 6.61184 7.14546 7.58288 7.67067 7.92128 8.33828 8.58033 9.22217 10.84245 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030683 B = 0.001531 C = 0.001511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.342674 B =18280.030825 C =18526.835358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C -0.020 4.020 4 C -0.157 4.157 5 C -0.149 4.149 6 C -0.130 4.130 7 C 0.515 3.485 8 O -0.528 6.528 9 N -0.720 5.720 10 C 0.125 3.875 11 H 0.119 0.881 12 C -0.164 4.164 13 C 0.130 3.870 14 H 0.118 0.882 15 N -0.727 5.727 16 C 0.533 3.467 17 O -0.516 6.516 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C -0.153 4.153 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.400 0.600 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.398 0.602 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.268 0.732 47 H 0.082 0.918 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.762 -26.711 -15.915 32.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.165 4.165 3 C -0.020 4.020 4 C -0.213 4.213 5 C -0.206 4.206 6 C -0.170 4.170 7 C 0.302 3.698 8 O -0.405 6.405 9 N -0.370 5.370 10 C 0.019 3.981 11 H 0.137 0.863 12 C -0.205 4.205 13 C 0.024 3.976 14 H 0.136 0.864 15 N -0.381 5.381 16 C 0.319 3.681 17 O -0.389 6.389 18 C -0.305 4.305 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.192 4.192 29 H 0.123 0.877 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.234 0.766 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.232 0.768 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.101 0.899 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.964 -24.346 -17.832 31.780 hybrid contribution 0.349 -1.982 2.855 3.493 sum -9.616 -26.327 -14.978 31.779 Atomic orbital electron populations 1.24046 0.96210 1.02165 1.00731 1.22939 0.95945 0.97532 1.00131 1.19371 0.94935 0.93347 0.94344 1.22189 0.98567 0.99592 1.00995 1.22055 0.99230 1.03470 0.95892 1.21729 0.99317 0.95577 1.00358 1.20701 0.79113 0.88489 0.81496 1.90602 1.63853 1.50606 1.35446 1.46013 1.44923 1.20757 1.25340 1.22356 0.91484 0.84210 1.00018 0.86267 1.24030 0.97918 0.99365 0.99141 1.22138 0.94985 0.96820 0.83664 0.86403 1.45932 1.74128 1.08689 1.09308 1.20361 0.75335 0.82320 0.90099 1.90707 1.48966 1.41031 1.58223 1.23539 1.04408 1.08230 0.94290 1.85423 1.92172 0.95014 1.10769 1.22909 1.55770 0.95885 0.93842 0.90882 1.24995 0.94751 0.94563 0.99277 1.70028 1.46129 0.97752 1.36325 0.86113 0.78122 0.78272 0.82960 1.19638 1.20558 1.20559 1.23743 0.98013 0.97493 0.99926 0.87747 0.88709 0.87539 0.89467 0.92740 0.93202 0.93428 0.92934 0.89467 0.88833 0.88816 0.76559 0.89442 0.90334 0.76787 0.89246 0.89210 0.92216 0.89910 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.14 13.70 29.01 0.40 -0.74 16 2 C -0.15 -0.88 8.76 -36.02 -0.32 -1.19 16 3 C -0.02 -0.13 0.74 -155.66 -0.11 -0.25 16 4 C -0.16 -1.25 6.83 37.16 0.25 -1.00 16 5 C -0.15 -1.14 8.16 37.16 0.30 -0.84 16 6 C -0.13 -0.72 4.75 -27.88 -0.13 -0.85 16 7 C 0.51 4.07 7.24 -10.99 -0.08 3.99 16 8 O -0.53 -5.95 10.95 5.55 0.06 -5.89 16 9 N -0.72 -4.51 5.36 -52.88 -0.28 -4.79 16 10 C 0.12 0.98 4.24 -66.98 -0.28 0.69 16 11 H 0.12 1.12 7.46 -51.93 -0.39 0.73 16 12 C -0.16 -1.58 7.70 -25.78 -0.20 -1.78 16 13 C 0.13 1.38 4.21 -67.12 -0.28 1.10 16 14 H 0.12 1.50 7.50 -51.93 -0.39 1.11 16 15 N -0.73 -8.90 5.36 -53.02 -0.28 -9.19 16 16 C 0.53 9.59 7.85 -10.99 -0.09 9.51 16 17 O -0.52 -11.49 15.48 5.55 0.09 -11.40 16 18 C -0.15 -3.02 6.16 36.00 0.22 -2.80 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 20 C -0.54 -15.16 9.50 30.94 0.29 -14.86 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.06 13.22 55.49 0.73 -25.32 16 24 Si 0.92 21.26 29.55 -169.99 -5.02 16.23 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 28 C -0.15 -1.05 7.58 -25.92 -0.20 -1.25 16 29 H 0.10 0.63 5.69 -52.49 -0.30 0.33 16 30 H 0.09 0.45 8.06 -52.49 -0.42 0.03 16 31 H 0.11 0.52 8.06 -52.49 -0.42 0.10 16 32 H 0.09 0.89 5.51 -51.93 -0.29 0.60 16 33 H 0.05 0.42 7.49 -51.93 -0.39 0.03 16 34 H 0.05 0.37 7.50 -51.93 -0.39 -0.02 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.84 5.51 -51.93 -0.29 0.56 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.42 8.14 -51.92 -0.42 0.00 16 40 H 0.40 1.45 8.73 -40.82 -0.36 1.10 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.40 3.61 8.71 -40.82 -0.36 3.26 16 44 H 0.09 1.62 8.14 -51.91 -0.42 1.19 16 45 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 46 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 47 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.09 0.46 8.09 -51.93 -0.42 0.04 16 LS Contribution 402.43 15.07 6.06 6.06 Total: -1.00 -35.45 402.43 -8.93 -44.37 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -7.75 Total: 2.05 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -0.32 Total: -8.29 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.17 Total: -39.30 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.15 Total: -17.30 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.45 -8.93 -44.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688040453.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.563 kcal (2) G-P(sol) polarization free energy of solvation -35.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds