Wall clock time and date at job start Sat Apr 11 2020 06:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50707 * 119.99972 * 2 1 4 4 C 1.53002 * 109.46888 * 0.02562 * 3 2 1 5 5 C 1.52996 * 109.47230 * 239.99834 * 3 2 1 6 6 C 1.52999 * 109.46871 * 120.00027 * 3 2 1 7 7 C 1.50699 * 109.47080 * 180.02562 * 6 3 2 8 8 O 1.21290 * 119.99829 * 0.02562 * 7 6 3 9 9 N 1.34778 * 120.00321 * 180.02562 * 7 6 3 10 10 C 1.46495 * 120.00037 * 180.02562 * 9 7 6 11 11 H 1.08998 * 112.85167 * 336.19310 * 10 9 7 12 12 C 1.54052 * 113.69874 * 107.46677 * 10 9 7 13 13 C 1.53781 * 86.98687 * 139.98728 * 12 10 9 14 14 H 1.09002 * 113.61445 * 89.16393 * 13 12 10 15 15 N 1.46497 * 113.61305 * 219.98100 * 13 12 10 16 16 C 1.34775 * 120.00126 * 254.13352 * 15 13 12 17 17 O 1.21286 * 119.99866 * 0.02562 * 16 15 13 18 18 C 1.50697 * 120.00136 * 180.02562 * 16 15 13 19 19 S 1.81002 * 109.47159 * 180.02562 * 18 16 15 20 20 C 1.76204 * 99.99989 * 179.97438 * 19 18 16 21 21 H 1.07996 * 119.99700 * 0.02562 * 20 19 18 22 22 C 1.38803 * 120.00033 * 179.97438 * 20 19 18 23 23 N 1.31627 * 119.99541 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00110 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47138 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47182 * 120.00061 * 24 22 20 27 27 H 1.48495 * 109.47387 * 240.00234 * 24 22 20 28 28 C 1.53783 * 113.61332 * 205.00239 * 10 9 7 29 29 H 1.07998 * 120.00171 * 0.02562 * 1 2 3 30 30 H 1.08000 * 119.99468 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.00171 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.46813 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.46659 * 299.99449 * 4 3 2 34 34 H 1.08998 * 109.47172 * 59.99560 * 4 3 2 35 35 H 1.08997 * 109.47361 * 300.00343 * 5 3 2 36 36 H 1.09004 * 109.46902 * 60.00285 * 5 3 2 37 37 H 1.09000 * 109.46880 * 179.97438 * 5 3 2 38 38 H 1.08996 * 109.47525 * 60.00164 * 6 3 2 39 39 H 1.09007 * 109.47286 * 299.99862 * 6 3 2 40 40 H 0.96995 * 119.99650 * 359.97438 * 9 7 6 41 41 H 1.08999 * 113.60931 * 25.48106 * 12 10 9 42 42 H 1.08998 * 113.69722 * 254.50188 * 12 10 9 43 43 H 0.97006 * 120.00058 * 74.13996 * 15 13 12 44 44 H 1.09012 * 109.47186 * 299.99920 * 18 16 15 45 45 H 1.09001 * 109.47748 * 59.99944 * 18 16 15 46 46 H 0.97002 * 119.99664 * 180.02562 * 23 22 20 47 47 H 1.08992 * 113.61796 * 105.38277 * 28 10 9 48 48 H 1.09005 * 113.68996 * 334.48889 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 6 1.0692 2.4681 0.0006 5 6 2.9432 1.3862 -1.2492 6 6 2.9431 1.3862 1.2492 7 6 3.6962 2.6915 1.2496 8 8 3.5439 3.4797 0.3404 9 7 4.5389 2.9832 2.2602 10 6 5.2704 4.2524 2.2608 11 1 5.3874 4.6740 1.2625 12 6 4.7540 5.2642 3.3013 13 6 6.2263 5.6211 3.5654 14 1 6.6046 6.4169 2.9237 15 7 6.5326 5.8381 4.9814 16 6 6.7342 7.0880 5.4435 17 8 6.6615 8.0332 4.6869 18 6 7.0498 7.3112 6.9000 19 16 7.2637 9.0822 7.2065 20 6 7.6122 9.0540 8.9335 21 1 7.6397 8.1134 9.4635 22 6 7.8523 10.2405 9.6126 23 7 7.8191 11.3868 8.9665 24 14 8.2223 10.2105 11.4433 25 1 8.2015 8.8075 11.9296 26 1 9.5641 10.7984 11.6868 27 1 7.1962 11.0016 12.1688 28 6 6.5785 4.2090 3.0682 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.6143 3.4120 0.0011 33 1 0.4424 2.4105 -0.8892 34 1 0.4429 2.4101 0.8908 35 1 3.6515 0.5578 -1.2492 36 1 2.3165 1.3285 -2.1392 37 1 3.4878 2.3304 -1.2494 38 1 3.6515 0.5577 1.2493 39 1 2.3165 1.3284 2.1393 40 1 4.6603 2.3530 2.9875 41 1 4.2577 4.7995 4.1533 42 1 4.1775 6.0818 2.8686 43 1 6.5905 5.0821 5.5866 44 1 6.2303 6.9334 7.5115 45 1 7.9684 6.7840 7.1578 46 1 7.9873 12.2160 9.4409 47 1 7.4738 4.1753 2.4476 48 1 6.5816 3.4566 3.8570 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688040453.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:10 Heat of formation + Delta-G solvation = -66.655034 kcal Electronic energy + Delta-G solvation = -26124.546012 eV Core-core repulsion = 22305.613151 eV Total energy + Delta-G solvation = -3818.932861 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.54803 -40.76699 -39.34232 -37.80937 -35.23206 -34.58177 -33.71313 -32.10659 -30.68499 -29.01589 -28.18218 -27.67552 -26.73584 -25.17457 -23.32145 -21.85956 -21.39471 -21.00141 -19.77706 -19.03787 -18.08464 -17.94614 -17.63745 -16.87931 -16.53862 -16.47270 -16.40128 -16.25369 -15.81088 -15.73323 -15.15459 -14.94596 -14.64360 -14.40585 -14.38826 -13.93407 -13.63145 -13.46857 -13.39614 -13.15529 -12.98262 -12.91041 -12.68360 -12.64556 -12.40698 -12.26532 -12.24060 -11.98957 -11.87176 -11.78276 -11.68570 -11.50141 -11.15624 -10.91182 -10.44277 -10.25924 -10.21342 -10.11080 -9.86437 -8.66417 -8.34485 -6.12565 1.27844 1.41914 1.43725 1.48270 1.58801 1.60414 1.70907 2.14399 2.27731 2.48925 2.99986 3.32795 3.41442 3.57166 3.72654 3.86495 3.88701 3.92219 4.01920 4.03147 4.22816 4.32752 4.42400 4.49248 4.52070 4.63527 4.68417 4.69548 4.72502 4.77949 4.85203 4.90859 4.97885 5.01567 5.07244 5.08440 5.16645 5.23666 5.42530 5.44730 5.48629 5.58270 5.69884 5.80960 5.97772 6.20388 6.54163 6.65816 7.07049 7.28054 7.38639 8.75028 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030683 B = 0.001531 C = 0.001511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.342674 B =18280.030825 C =18526.835358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 C -0.021 4.021 4 C -0.153 4.153 5 C -0.146 4.146 6 C -0.123 4.123 7 C 0.509 3.491 8 O -0.568 6.568 9 N -0.706 5.706 10 C 0.132 3.868 11 H 0.100 0.900 12 C -0.162 4.162 13 C 0.115 3.885 14 H 0.090 0.910 15 N -0.698 5.698 16 C 0.533 3.467 17 O -0.568 6.568 18 C -0.129 4.129 19 S -0.157 6.157 20 C -0.545 4.545 21 H 0.084 0.916 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 1.000 3.000 25 H -0.255 1.255 26 H -0.274 1.274 27 H -0.275 1.275 28 C -0.125 4.125 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.123 0.877 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.046 0.954 37 H 0.063 0.937 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.418 0.582 41 H 0.102 0.898 42 H 0.051 0.949 43 H 0.419 0.581 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.271 0.729 47 H 0.091 0.909 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.578 -30.901 -14.124 35.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.165 4.165 3 C -0.022 4.022 4 C -0.210 4.210 5 C -0.203 4.203 6 C -0.163 4.163 7 C 0.297 3.703 8 O -0.447 6.447 9 N -0.358 5.358 10 C 0.026 3.974 11 H 0.118 0.882 12 C -0.202 4.202 13 C 0.009 3.991 14 H 0.108 0.892 15 N -0.351 5.351 16 C 0.319 3.681 17 O -0.447 6.447 18 C -0.280 4.280 19 S 0.070 5.930 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.192 4.192 23 N -0.549 5.549 24 Si 0.821 3.179 25 H -0.179 1.179 26 H -0.200 1.200 27 H -0.200 1.200 28 C -0.163 4.163 29 H 0.116 0.884 30 H 0.125 0.875 31 H 0.141 0.859 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.138 0.862 39 H 0.129 0.871 40 H 0.255 0.745 41 H 0.120 0.880 42 H 0.070 0.930 43 H 0.257 0.743 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.080 0.920 47 H 0.110 0.890 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.783 -28.631 -16.023 34.237 hybrid contribution 0.222 -0.750 2.174 2.310 sum -9.561 -29.381 -13.849 33.859 Atomic orbital electron populations 1.24152 0.96406 1.02488 1.00616 1.22966 0.95924 0.97421 1.00195 1.19370 0.94785 0.93349 0.94678 1.22128 0.98666 0.99138 1.01077 1.21991 0.99357 1.02712 0.96279 1.21744 0.99551 0.94798 1.00193 1.21215 0.78998 0.88985 0.81059 1.90614 1.65051 1.51992 1.37054 1.45853 1.44119 1.20246 1.25577 1.22056 0.92137 0.84529 0.98695 0.88241 1.24019 0.96837 0.99245 1.00111 1.22285 0.96184 0.98584 0.81999 0.89179 1.45637 1.71761 1.07245 1.10445 1.20140 0.75326 0.83524 0.89098 1.90699 1.51753 1.43119 1.59088 1.23379 1.06325 1.02309 0.95999 1.85639 1.92611 1.02925 1.11789 1.23248 1.55588 0.96594 0.93853 0.89762 1.26140 0.94243 0.93977 1.04849 1.70197 1.47374 0.98645 1.38663 0.84892 0.77929 0.79080 0.75961 1.17871 1.19993 1.20038 1.23634 0.97536 0.95043 1.00134 0.88442 0.87503 0.85886 0.91999 0.93119 0.92667 0.92065 0.93523 0.91778 0.86176 0.87146 0.74472 0.87994 0.93030 0.74300 0.87128 0.86970 0.92034 0.89004 0.85863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.98 13.70 67.78 0.93 -1.05 16 2 C -0.15 -1.41 8.76 25.65 0.22 -1.18 16 3 C -0.02 -0.26 0.74 -52.93 -0.04 -0.30 16 4 C -0.15 -2.45 6.83 71.98 0.49 -1.96 16 5 C -0.15 -2.14 8.16 71.98 0.59 -1.56 16 6 C -0.12 -1.04 4.75 29.85 0.14 -0.89 16 7 C 0.51 7.32 7.24 87.66 0.63 7.95 16 8 O -0.57 -13.06 10.95 -3.06 -0.03 -13.09 16 9 N -0.71 -7.05 5.36 -439.60 -2.36 -9.41 16 10 C 0.13 1.89 4.24 45.61 0.19 2.08 16 11 H 0.10 1.90 7.46 -2.39 -0.02 1.88 16 12 C -0.16 -2.98 7.70 31.21 0.24 -2.74 16 13 C 0.12 2.32 4.21 45.52 0.19 2.52 16 14 H 0.09 2.39 7.50 -2.39 -0.02 2.37 16 15 N -0.70 -15.65 5.36 -440.03 -2.36 -18.01 16 16 C 0.53 18.98 7.85 87.66 0.69 19.66 16 17 O -0.57 -26.26 15.48 -3.05 -0.05 -26.31 16 18 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 19 S -0.16 -8.67 20.57 -56.49 -1.16 -9.83 16 20 C -0.55 -30.86 9.50 67.96 0.65 -30.22 16 21 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 22 C 0.01 0.71 5.49 84.86 0.47 1.18 16 23 N -0.91 -56.06 13.22 21.65 0.29 -55.78 16 24 Si 1.00 43.24 29.55 68.60 2.03 45.27 16 25 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 28 C -0.12 -1.34 7.58 31.12 0.24 -1.10 16 29 H 0.10 1.08 5.69 -2.91 -0.02 1.06 16 30 H 0.11 0.79 8.06 -2.91 -0.02 0.77 16 31 H 0.12 0.79 8.06 -2.91 -0.02 0.77 16 32 H 0.06 1.34 5.51 -2.39 -0.01 1.32 16 33 H 0.05 0.81 7.49 -2.39 -0.02 0.79 16 34 H 0.05 0.79 7.50 -2.39 -0.02 0.77 16 35 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.06 1.27 5.51 -2.39 -0.01 1.26 16 38 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 40 H 0.42 1.28 8.73 -92.71 -0.81 0.47 16 41 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.42 5.96 8.71 -92.70 -0.81 5.15 16 44 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 45 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 46 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 47 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.12 0.58 8.09 -2.38 -0.02 0.56 16 Total: -1.00 -82.52 402.43 1.78 -80.74 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -0.65 Total: 18.52 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 6.07 Total: -12.10 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -4.43 Total: -83.20 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -0.08 Total: -39.39 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal Total: -82.52 1.78 -80.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688040453.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.084 kcal (2) G-P(sol) polarization free energy of solvation -82.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds