Wall clock time and date at job start Sat Apr 11 2020 06:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50708 * 119.99667 * 2 1 4 4 C 1.53002 * 109.46682 * 125.00095 * 3 2 1 5 5 C 1.52998 * 109.46754 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.47007 * 180.02562 * 5 4 3 7 7 O 1.21281 * 119.99632 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00131 * 180.02562 * 6 5 4 9 9 C 1.47027 * 125.64917 * 359.95975 * 8 6 5 10 10 C 1.54323 * 107.27247 * 178.97400 * 9 8 6 11 11 C 1.55155 * 102.94343 * 337.80742 * 10 9 8 12 12 H 1.09008 * 111.03526 * 277.41580 * 11 10 9 13 13 C 1.52999 * 111.00487 * 153.57646 * 11 10 9 14 14 N 1.46497 * 109.46992 * 72.80208 * 13 11 10 15 15 C 1.34777 * 119.99525 * 179.97438 * 14 13 11 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 14 13 18 18 S 1.80997 * 109.47151 * 180.27780 * 17 15 14 19 19 C 1.76196 * 100.00314 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00018 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00626 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99674 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00584 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47157 * 59.99781 * 23 21 19 25 25 H 1.48496 * 109.47271 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46802 * 300.00045 * 23 21 19 27 27 C 1.47421 * 125.64913 * 179.97438 * 8 6 5 28 28 H 1.08004 * 119.99527 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.00465 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00465 * 180.02562 * 2 1 3 31 31 H 1.08993 * 109.47170 * 5.00694 * 3 2 1 32 32 H 1.08991 * 109.46939 * 244.99970 * 3 2 1 33 33 H 1.09003 * 109.47021 * 60.00394 * 4 3 2 34 34 H 1.09000 * 109.47450 * 300.00455 * 4 3 2 35 35 H 1.09003 * 109.46873 * 60.00501 * 5 4 3 36 36 H 1.09002 * 109.47574 * 299.99973 * 5 4 3 37 37 H 1.09000 * 109.87935 * 298.39496 * 9 8 6 38 38 H 1.09000 * 109.87982 * 59.39898 * 9 8 6 39 39 H 1.08998 * 110.71784 * 219.44260 * 10 9 8 40 40 H 1.08997 * 110.71643 * 96.17024 * 10 9 8 41 41 H 1.08995 * 109.46838 * 312.80095 * 13 11 10 42 42 H 1.09001 * 109.46617 * 192.80430 * 13 11 10 43 43 H 0.97000 * 120.00580 * 0.02562 * 14 13 11 44 44 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 45 45 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 46 46 H 0.97003 * 120.00297 * 179.97438 * 22 21 19 47 47 H 1.09010 * 110.36558 * 85.26023 * 27 8 6 48 48 H 1.09003 * 110.46466 * 322.98717 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.8004 2.6579 1.1813 6 6 4.7578 2.6852 2.3448 7 8 4.8212 1.7385 3.1002 8 7 5.5427 3.7621 2.5466 9 6 5.5676 4.9726 1.7125 10 6 6.5947 5.9394 2.3386 11 6 6.6785 5.4526 3.8094 12 1 5.8650 5.8664 4.4054 13 6 8.0361 5.7977 4.4248 14 7 8.1042 7.2386 4.6803 15 6 9.2147 7.7747 5.2243 16 8 10.1577 7.0644 5.5019 17 6 9.2872 9.2579 5.4814 18 16 10.8954 9.6670 6.2040 19 6 10.7110 11.4089 6.3946 20 1 9.7932 11.8911 6.0920 21 6 11.7449 12.1614 6.9345 22 7 12.8630 11.5736 7.3047 23 14 11.5491 14.0080 7.1371 24 1 10.3967 14.2885 8.0307 25 1 12.7859 14.5745 7.7326 26 1 11.3088 14.6289 5.8098 27 6 6.5186 3.9212 3.6399 28 1 -0.5399 -0.9354 -0.0004 29 1 -0.5401 0.9353 0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 1.3585 2.1317 0.0897 32 1 2.6212 1.4027 -0.9313 33 1 3.7400 0.5066 1.0920 34 1 2.4772 1.2355 2.1131 35 1 3.0956 3.4847 1.2707 36 1 4.3582 2.7551 0.2499 37 1 5.8702 4.7168 0.6970 38 1 4.5803 5.4343 1.6997 39 1 6.2348 6.9672 2.2924 40 1 7.5624 5.8459 1.8457 41 1 8.8305 5.5130 3.7351 42 1 8.1579 5.2562 5.3629 43 1 7.3499 7.8068 4.4586 44 1 9.1636 9.7961 4.5415 45 1 8.4947 9.5461 6.1720 46 1 13.5857 12.0994 7.6817 47 1 7.4718 3.4685 3.3665 48 1 6.1376 3.4755 4.5588 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688220402.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:14 Heat of formation + Delta-G solvation = -72.770526 kcal Electronic energy + Delta-G solvation = -25501.928206 eV Core-core repulsion = 21682.730157 eV Total energy + Delta-G solvation = -3819.198049 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.58777 -39.27373 -38.07863 -36.38936 -34.83372 -32.96816 -32.44459 -31.99235 -30.10530 -29.24441 -27.81942 -25.66259 -25.23923 -23.61091 -22.28294 -20.95205 -20.40500 -20.28754 -19.45875 -17.89838 -17.50165 -17.05089 -16.43538 -16.27572 -15.70724 -15.46430 -15.35403 -15.05529 -14.81766 -14.31006 -14.17195 -14.01155 -13.88639 -13.57543 -13.32515 -13.23165 -13.10119 -12.72707 -12.58165 -12.45646 -12.20358 -12.01696 -11.89459 -11.68112 -11.37436 -11.28124 -11.20663 -11.13292 -11.06257 -11.05123 -10.78428 -10.21246 -9.84372 -9.79117 -9.45386 -9.08236 -9.06895 -8.94012 -8.25948 -6.51953 -6.23048 -3.93996 1.81890 2.26441 2.51760 3.00584 3.06288 3.22134 3.26277 3.29260 3.63919 3.94443 4.05767 4.19019 4.25963 4.29647 4.41144 4.47811 4.68712 4.74660 4.76929 4.84783 4.90108 5.01603 5.02467 5.09765 5.12074 5.15302 5.18866 5.27893 5.30028 5.42111 5.43710 5.47469 5.52857 5.59953 5.66696 5.73456 5.81111 5.86050 5.88105 5.91149 6.10755 6.17263 6.30402 6.54428 7.08766 7.57450 7.64849 7.78151 8.33259 8.57112 9.22100 10.84341 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.040312 B = 0.001372 C = 0.001342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.417513 B =20400.457878 C =20854.894611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.095 4.095 4 C -0.101 4.101 5 C -0.136 4.136 6 C 0.527 3.473 7 O -0.539 6.539 8 N -0.621 5.621 9 C 0.100 3.900 10 C -0.129 4.129 11 C -0.113 4.113 12 H 0.093 0.907 13 C 0.133 3.867 14 N -0.738 5.738 15 C 0.532 3.468 16 O -0.516 6.516 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.113 3.887 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.398 0.602 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.074 0.926 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.530 -16.851 -16.957 33.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.170 4.170 3 C -0.132 4.132 4 C -0.139 4.139 5 C -0.175 4.175 6 C 0.316 3.684 7 O -0.416 6.416 8 N -0.356 5.356 9 C -0.023 4.023 10 C -0.167 4.167 11 C -0.133 4.133 12 H 0.111 0.889 13 C 0.008 3.992 14 N -0.393 5.393 15 C 0.318 3.682 16 O -0.390 6.390 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.010 4.010 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.231 0.769 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.092 0.908 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -21.777 -18.616 -16.024 32.826 hybrid contribution -1.587 2.385 -0.358 2.887 sum -23.364 -16.232 -16.381 32.828 Atomic orbital electron populations 1.23866 0.95985 1.01865 1.01604 1.22956 0.96039 0.98565 0.99477 1.20795 0.98175 0.95585 0.98694 1.21305 0.97750 0.96100 0.98722 1.21685 0.97994 1.00736 0.97131 1.20443 0.80416 0.80907 0.86618 1.90730 1.68394 1.34745 1.47689 1.48535 1.40115 1.17307 1.29680 1.22085 1.00115 0.85270 0.94821 1.22774 0.99836 0.99226 0.94860 1.22608 0.98559 0.95406 0.96697 0.88878 1.21133 0.95203 0.82082 1.00770 1.45946 1.18651 1.08274 1.66437 1.20314 0.81706 0.90082 0.76134 1.90714 1.36122 1.62413 1.49768 1.23530 1.08014 0.93804 1.05068 1.85414 1.10328 1.07935 1.79641 1.22827 1.04463 0.92452 1.48796 0.90983 1.24984 0.94449 0.99433 0.94626 1.70007 1.04616 1.36327 1.39334 0.86229 0.77747 0.82969 0.78590 1.19939 1.20791 1.19935 1.22144 0.92783 0.94952 0.91087 0.88549 0.88621 0.87332 0.91427 0.90872 0.90967 0.91000 0.88889 0.88849 0.91098 0.91142 0.89468 0.89766 0.91128 0.91123 0.76857 0.89218 0.89233 0.92101 0.90783 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.02 14.32 29.01 0.42 -0.61 16 2 C -0.15 -0.84 9.52 -36.02 -0.34 -1.18 16 3 C -0.10 -0.45 5.66 -27.88 -0.16 -0.61 16 4 C -0.10 -0.64 4.49 -26.73 -0.12 -0.76 16 5 C -0.14 -0.75 4.89 -27.88 -0.14 -0.88 16 6 C 0.53 4.86 7.85 -10.99 -0.09 4.77 16 7 O -0.54 -7.20 16.24 5.56 0.09 -7.11 16 8 N -0.62 -4.82 3.33 -170.52 -0.57 -5.39 16 9 C 0.10 0.49 6.49 -3.06 -0.02 0.47 16 10 C -0.13 -0.68 6.37 -24.90 -0.16 -0.84 16 11 C -0.11 -0.78 3.05 -88.48 -0.27 -1.05 16 12 H 0.09 0.61 8.14 -51.92 -0.42 0.18 16 13 C 0.13 1.34 5.13 -4.04 -0.02 1.32 16 14 N -0.74 -8.76 5.50 -60.30 -0.33 -9.09 16 15 C 0.53 9.43 7.85 -10.98 -0.09 9.34 16 16 O -0.52 -11.41 15.86 5.55 0.09 -11.32 16 17 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 18 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 19 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 20 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -25.98 13.22 55.49 0.73 -25.24 16 23 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 C 0.11 0.93 6.37 -2.54 -0.02 0.92 16 28 H 0.10 0.43 8.06 -52.48 -0.42 0.01 16 29 H 0.10 0.44 7.84 -52.49 -0.41 0.02 16 30 H 0.11 0.57 8.06 -52.49 -0.42 0.14 16 31 H 0.07 0.28 7.79 -51.93 -0.40 -0.12 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.54 8.10 -51.93 -0.42 0.11 16 34 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.50 7.91 -51.93 -0.41 0.09 16 41 H 0.07 0.77 7.97 -51.93 -0.41 0.36 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.40 3.49 8.47 -40.82 -0.35 3.14 16 44 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 45 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 46 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.07 0.63 8.04 -51.92 -0.42 0.21 16 48 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 LS Contribution 414.64 15.07 6.25 6.25 Total: -1.00 -36.54 414.64 -9.83 -46.38 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -8.28 Total: -2.10 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -0.58 Total: -4.68 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: -0.17 Total: -39.72 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.18 Total: -18.43 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -36.54 -9.83 -46.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688220402.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.394 kcal (2) G-P(sol) polarization free energy of solvation -36.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds