Wall clock time and date at job start Sat Apr 11 2020 06:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50708 * 119.99667 * 2 1 4 4 C 1.53002 * 109.46682 * 125.00095 * 3 2 1 5 5 C 1.52998 * 109.46754 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.47007 * 180.02562 * 5 4 3 7 7 O 1.21281 * 119.99632 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00131 * 180.02562 * 6 5 4 9 9 C 1.47027 * 125.64917 * 359.95975 * 8 6 5 10 10 C 1.54323 * 107.27247 * 178.97400 * 9 8 6 11 11 C 1.55155 * 102.94343 * 337.80742 * 10 9 8 12 12 H 1.09008 * 111.03526 * 277.41580 * 11 10 9 13 13 C 1.52999 * 111.00487 * 153.57646 * 11 10 9 14 14 N 1.46497 * 109.46992 * 72.80208 * 13 11 10 15 15 C 1.34777 * 119.99525 * 179.97438 * 14 13 11 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 14 13 18 18 S 1.80997 * 109.47151 * 180.27780 * 17 15 14 19 19 C 1.76196 * 100.00314 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00018 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00626 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99674 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00584 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47157 * 59.99781 * 23 21 19 25 25 H 1.48496 * 109.47271 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46802 * 300.00045 * 23 21 19 27 27 C 1.47421 * 125.64913 * 179.97438 * 8 6 5 28 28 H 1.08004 * 119.99527 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.00465 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00465 * 180.02562 * 2 1 3 31 31 H 1.08993 * 109.47170 * 5.00694 * 3 2 1 32 32 H 1.08991 * 109.46939 * 244.99970 * 3 2 1 33 33 H 1.09003 * 109.47021 * 60.00394 * 4 3 2 34 34 H 1.09000 * 109.47450 * 300.00455 * 4 3 2 35 35 H 1.09003 * 109.46873 * 60.00501 * 5 4 3 36 36 H 1.09002 * 109.47574 * 299.99973 * 5 4 3 37 37 H 1.09000 * 109.87935 * 298.39496 * 9 8 6 38 38 H 1.09000 * 109.87982 * 59.39898 * 9 8 6 39 39 H 1.08998 * 110.71784 * 219.44260 * 10 9 8 40 40 H 1.08997 * 110.71643 * 96.17024 * 10 9 8 41 41 H 1.08995 * 109.46838 * 312.80095 * 13 11 10 42 42 H 1.09001 * 109.46617 * 192.80430 * 13 11 10 43 43 H 0.97000 * 120.00580 * 0.02562 * 14 13 11 44 44 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 45 45 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 46 46 H 0.97003 * 120.00297 * 179.97438 * 22 21 19 47 47 H 1.09010 * 110.36558 * 85.26023 * 27 8 6 48 48 H 1.09003 * 110.46466 * 322.98717 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.8004 2.6579 1.1813 6 6 4.7578 2.6852 2.3448 7 8 4.8212 1.7385 3.1002 8 7 5.5427 3.7621 2.5466 9 6 5.5676 4.9726 1.7125 10 6 6.5947 5.9394 2.3386 11 6 6.6785 5.4526 3.8094 12 1 5.8650 5.8664 4.4054 13 6 8.0361 5.7977 4.4248 14 7 8.1042 7.2386 4.6803 15 6 9.2147 7.7747 5.2243 16 8 10.1577 7.0644 5.5019 17 6 9.2872 9.2579 5.4814 18 16 10.8954 9.6670 6.2040 19 6 10.7110 11.4089 6.3946 20 1 9.7932 11.8911 6.0920 21 6 11.7449 12.1614 6.9345 22 7 12.8630 11.5736 7.3047 23 14 11.5491 14.0080 7.1371 24 1 10.3967 14.2885 8.0307 25 1 12.7859 14.5745 7.7326 26 1 11.3088 14.6289 5.8098 27 6 6.5186 3.9212 3.6399 28 1 -0.5399 -0.9354 -0.0004 29 1 -0.5401 0.9353 0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 1.3585 2.1317 0.0897 32 1 2.6212 1.4027 -0.9313 33 1 3.7400 0.5066 1.0920 34 1 2.4772 1.2355 2.1131 35 1 3.0956 3.4847 1.2707 36 1 4.3582 2.7551 0.2499 37 1 5.8702 4.7168 0.6970 38 1 4.5803 5.4343 1.6997 39 1 6.2348 6.9672 2.2924 40 1 7.5624 5.8459 1.8457 41 1 8.8305 5.5130 3.7351 42 1 8.1579 5.2562 5.3629 43 1 7.3499 7.8068 4.4586 44 1 9.1636 9.7961 4.5415 45 1 8.4947 9.5461 6.1720 46 1 13.5857 12.0994 7.6817 47 1 7.4718 3.4685 3.3665 48 1 6.1376 3.4755 4.5588 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688220402.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:13 Heat of formation + Delta-G solvation = -97.214850 kcal Electronic energy + Delta-G solvation = -25502.988192 eV Core-core repulsion = 21682.730157 eV Total energy + Delta-G solvation = -3820.258034 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.26690 -40.53387 -38.84875 -36.84527 -35.91154 -34.56642 -33.56425 -32.78900 -31.02281 -30.19903 -28.42482 -27.65550 -26.18727 -24.17938 -22.76567 -21.83695 -21.44229 -20.76256 -20.02958 -19.79322 -18.14223 -17.87760 -17.68744 -17.03005 -16.86121 -16.65986 -16.53792 -15.98495 -15.94426 -15.56975 -15.01832 -14.72368 -14.69682 -14.45013 -14.38178 -14.13308 -14.04714 -13.80277 -13.43763 -13.24194 -13.15083 -12.97653 -12.84498 -12.64501 -12.61984 -12.47330 -12.27298 -11.93374 -11.76229 -11.72998 -11.70516 -11.60642 -11.11109 -11.00141 -10.88735 -10.25127 -10.18687 -10.10667 -9.69052 -8.64842 -8.32829 -6.10929 1.28542 1.41786 1.45346 1.48613 1.57574 1.60726 1.64145 1.93425 2.28480 2.33978 3.01523 3.30943 3.39351 3.51565 3.75460 3.80981 3.85213 4.04000 4.05642 4.25945 4.27662 4.31303 4.34568 4.35889 4.37688 4.50872 4.54641 4.63365 4.67215 4.69742 4.72926 4.78212 4.89157 4.93361 4.99155 5.07326 5.09521 5.21138 5.22659 5.32727 5.40663 5.43271 5.44819 5.79118 5.91211 6.21270 6.49358 6.53715 7.08565 7.12682 7.27734 8.76155 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.040312 B = 0.001372 C = 0.001342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.417513 B =20400.457878 C =20854.894611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.167 4.167 3 C -0.088 4.088 4 C -0.097 4.097 5 C -0.126 4.126 6 C 0.517 3.483 7 O -0.593 6.593 8 N -0.621 5.621 9 C 0.098 3.902 10 C -0.126 4.126 11 C -0.097 4.097 12 H 0.106 0.894 13 C 0.134 3.866 14 N -0.707 5.707 15 C 0.533 3.467 16 O -0.568 6.568 17 C -0.129 4.129 18 S -0.156 6.156 19 C -0.547 4.547 20 H 0.084 0.916 21 C 0.014 3.986 22 N -0.913 5.913 23 Si 0.997 3.003 24 H -0.262 1.262 25 H -0.281 1.281 26 H -0.261 1.261 27 C 0.109 3.891 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.418 0.582 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.271 0.729 47 H 0.066 0.934 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.367 -14.638 -19.118 35.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.185 4.185 3 C -0.125 4.125 4 C -0.136 4.136 5 C -0.165 4.165 6 C 0.308 3.692 7 O -0.474 6.474 8 N -0.354 5.354 9 C -0.024 4.024 10 C -0.163 4.163 11 C -0.116 4.116 12 H 0.124 0.876 13 C 0.009 3.991 14 N -0.362 5.362 15 C 0.319 3.681 16 O -0.446 6.446 17 C -0.280 4.280 18 S 0.072 5.928 19 C -0.694 4.694 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.549 5.549 23 Si 0.819 3.181 24 H -0.187 1.187 25 H -0.206 1.206 26 H -0.185 1.185 27 C -0.015 4.015 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.128 0.872 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.256 0.744 44 H 0.132 0.868 45 H 0.128 0.872 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -24.678 -16.378 -18.235 34.782 hybrid contribution -0.780 1.574 0.280 1.779 sum -25.458 -14.804 -17.955 34.492 Atomic orbital electron populations 1.24019 0.96002 1.02499 1.01083 1.23104 0.96402 0.99039 0.99989 1.20755 0.97958 0.95466 0.98335 1.21227 0.97579 0.96236 0.98515 1.21711 0.97635 1.00875 0.96287 1.21189 0.80666 0.80335 0.86977 1.90705 1.70133 1.36807 1.49780 1.48647 1.39205 1.17971 1.29601 1.22326 1.01321 0.83801 0.94946 1.22816 1.00038 1.00543 0.92926 1.22425 0.96632 0.94413 0.98152 0.87555 1.21195 0.97158 0.80441 1.00258 1.45614 1.17346 1.09294 1.63933 1.20074 0.82481 0.89207 0.76352 1.90706 1.38385 1.63155 1.52396 1.23370 1.03371 0.95384 1.05874 1.85624 1.17058 1.08990 1.81177 1.23186 1.05047 0.92527 1.48678 0.89755 1.26115 0.93889 1.05074 0.93976 1.70183 1.05715 1.38496 1.40512 0.85019 0.77972 0.75943 0.79169 1.18677 1.20573 1.18510 1.22076 0.92671 0.95803 0.90904 0.88219 0.87803 0.87747 0.90246 0.89575 0.92841 0.93112 0.86347 0.86414 0.89358 0.88718 0.87240 0.90292 0.91828 0.92581 0.74424 0.86839 0.87168 0.92041 0.91596 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.87 14.32 67.78 0.97 -0.90 16 2 C -0.17 -1.72 9.52 25.65 0.24 -1.48 16 3 C -0.09 -0.68 5.66 29.85 0.17 -0.51 16 4 C -0.10 -1.16 4.49 30.59 0.14 -1.03 16 5 C -0.13 -1.09 4.89 29.85 0.15 -0.94 16 6 C 0.52 9.09 7.85 87.66 0.69 9.78 16 7 O -0.59 -16.50 16.24 -3.03 -0.05 -16.55 16 8 N -0.62 -8.54 3.33 -811.80 -2.70 -11.24 16 9 C 0.10 0.57 6.49 86.73 0.56 1.13 16 10 C -0.13 -0.87 6.37 31.78 0.20 -0.67 16 11 C -0.10 -1.13 3.05 -9.41 -0.03 -1.15 16 12 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 13 C 0.13 2.56 5.13 86.38 0.44 3.00 16 14 N -0.71 -15.20 5.50 -463.07 -2.55 -17.75 16 15 C 0.53 18.43 7.85 87.66 0.69 19.12 16 16 O -0.57 -25.62 15.86 -3.04 -0.05 -25.67 16 17 C -0.13 -4.81 6.16 71.24 0.44 -4.37 16 18 S -0.16 -8.49 20.57 -56.49 -1.16 -9.65 16 19 C -0.55 -30.62 9.50 67.95 0.65 -29.98 16 20 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 21 C 0.01 0.80 5.49 84.86 0.47 1.26 16 22 N -0.91 -55.71 13.22 21.65 0.29 -55.43 16 23 Si 1.00 42.80 29.55 68.60 2.03 44.82 16 24 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 25 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 26 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 27 C 0.11 1.74 6.37 86.85 0.55 2.29 16 28 H 0.10 0.82 8.06 -2.91 -0.02 0.80 16 29 H 0.10 0.78 7.84 -2.91 -0.02 0.76 16 30 H 0.10 1.10 8.06 -2.91 -0.02 1.08 16 31 H 0.08 0.44 7.79 -2.39 -0.02 0.42 16 32 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 34 H 0.05 0.81 8.10 -2.39 -0.02 0.79 16 35 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 39 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.08 0.69 7.91 -2.39 -0.02 0.67 16 41 H 0.06 1.36 7.97 -2.39 -0.02 1.34 16 42 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.42 5.71 8.47 -92.71 -0.79 4.92 16 44 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 45 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 46 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 47 H 0.07 1.14 8.04 -2.38 -0.02 1.13 16 48 H 0.06 1.27 8.04 -2.39 -0.02 1.25 16 Total: -1.00 -84.46 414.64 2.28 -82.19 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.14 Total: 13.72 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 6.33 Total: -4.44 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -4.96 Total: -84.42 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -0.10 Total: -42.22 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.65 kcal Total: -84.46 2.28 -82.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688220402.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.027 kcal (2) G-P(sol) polarization free energy of solvation -84.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds