Wall clock time and date at job start Sat Apr 11 2020 06:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 C 1.52996 * 109.47175 * 124.72247 * 3 2 1 5 5 C 1.52994 * 109.47322 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47371 * 180.02562 * 5 4 3 7 7 O 1.21273 * 119.99890 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99700 * 179.97438 * 6 5 4 9 9 C 1.47027 * 125.65223 * 359.69113 * 8 6 5 10 10 C 1.54314 * 107.27362 * 180.96562 * 9 8 6 11 11 C 1.55156 * 102.86478 * 22.52949 * 10 9 8 12 12 H 1.09001 * 111.00328 * 82.37712 * 11 10 9 13 13 C 1.53001 * 111.00110 * 206.22589 * 11 10 9 14 14 N 1.46502 * 109.47493 * 287.19182 * 13 11 10 15 15 C 1.34774 * 120.00180 * 179.97438 * 14 13 11 16 16 O 1.21273 * 120.00087 * 0.02562 * 15 14 13 17 17 C 1.50706 * 119.99641 * 180.02562 * 15 14 13 18 18 S 1.81006 * 109.46676 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99571 * 180.02562 * 18 17 15 20 20 H 1.07994 * 120.00572 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99645 * 180.02562 * 19 18 17 22 22 N 1.31632 * 120.00320 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 120.00018 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47102 * 89.99568 * 23 21 19 25 25 H 1.48501 * 109.47243 * 210.00176 * 23 21 19 26 26 H 1.48500 * 109.46632 * 329.99772 * 23 21 19 27 27 C 1.47428 * 125.64740 * 179.97438 * 8 6 5 28 28 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 29 29 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 30 30 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 31 31 H 1.09002 * 109.47005 * 244.72313 * 3 2 1 32 32 H 1.08999 * 109.47073 * 4.72010 * 3 2 1 33 33 H 1.09002 * 109.47207 * 299.99942 * 4 3 2 34 34 H 1.08999 * 109.47313 * 59.99910 * 4 3 2 35 35 H 1.09002 * 109.46801 * 300.00030 * 5 4 3 36 36 H 1.08997 * 109.47649 * 59.99665 * 5 4 3 37 37 H 1.08998 * 109.87898 * 300.51313 * 9 8 6 38 38 H 1.09001 * 109.87690 * 61.68048 * 9 8 6 39 39 H 1.09002 * 110.93003 * 264.10873 * 10 9 8 40 40 H 1.09005 * 110.73850 * 140.85755 * 10 9 8 41 41 H 1.09004 * 109.47368 * 47.19605 * 13 11 10 42 42 H 1.09005 * 109.46833 * 167.19461 * 13 11 10 43 43 H 0.97001 * 119.99846 * 0.02562 * 14 13 11 44 44 H 1.08999 * 109.47095 * 299.99737 * 17 15 14 45 45 H 1.08998 * 109.47250 * 60.00700 * 17 15 14 46 46 H 0.97001 * 120.00176 * 179.97438 * 22 21 19 47 47 H 1.09005 * 110.36645 * 274.67239 * 27 8 6 48 48 H 1.09004 * 110.36434 * 36.88359 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0301 1.3360 1.1856 5 6 3.7946 2.6612 1.1860 6 6 4.7471 2.6914 2.3534 7 8 4.8081 1.7462 3.1108 8 7 5.5312 3.7688 2.5557 9 6 5.5636 4.9749 1.7155 10 6 6.6229 5.9230 2.3157 11 6 7.5328 4.9586 3.1216 12 1 8.2651 4.4786 2.4724 13 6 8.2218 5.6904 4.2751 14 7 9.2694 6.5651 3.7423 15 6 10.0133 7.3135 4.5806 16 8 9.8159 7.2626 5.7761 17 6 11.0905 8.2136 4.0324 18 16 11.9057 9.0792 5.3971 19 6 13.0822 10.0320 4.4957 20 1 13.1255 9.9588 3.4191 21 6 13.9542 10.8760 5.1694 22 7 13.9019 10.9650 6.4816 23 14 15.2011 11.8868 4.2137 24 1 14.6040 13.1979 3.8537 25 1 16.4076 12.1054 5.0514 26 1 15.5829 11.1602 2.9761 27 6 6.5026 3.9307 3.6528 28 1 -0.5400 0.9353 -0.0045 29 1 -0.5400 -0.9353 0.0045 30 1 1.8500 -0.9353 0.0046 31 1 2.6252 1.4004 -0.9293 32 1 1.3582 2.1318 0.0846 33 1 2.4684 1.2408 2.1149 34 1 3.7354 0.5093 1.1010 35 1 4.3563 2.7569 0.2567 36 1 3.0891 3.4878 1.2708 37 1 5.8377 4.7083 0.6948 38 1 4.5873 5.4595 1.7250 39 1 6.1596 6.6572 2.9748 40 1 7.1890 6.4182 1.5267 41 1 7.4884 6.2892 4.8153 42 1 8.6667 4.9621 4.9532 43 1 9.4271 6.6061 2.7861 44 1 11.8242 7.6151 3.4924 45 1 10.6454 8.9417 3.3543 46 1 14.5115 11.5545 6.9525 47 1 6.0074 4.3156 4.5443 48 1 6.9902 2.9805 3.8710 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688220403.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:17 Heat of formation + Delta-G solvation = -72.773000 kcal Electronic energy + Delta-G solvation = -25499.564646 eV Core-core repulsion = 21680.366490 eV Total energy + Delta-G solvation = -3819.198156 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.58904 -39.27530 -38.08034 -36.39007 -34.83373 -32.96765 -32.44649 -31.99195 -30.10476 -29.24332 -27.81909 -25.66436 -25.24034 -23.61025 -22.28311 -20.95375 -20.40649 -20.28604 -19.45675 -17.89810 -17.52145 -17.03919 -16.39039 -16.25058 -15.85799 -15.48841 -15.32631 -14.83712 -14.81754 -14.50218 -14.16682 -14.00630 -13.91806 -13.43493 -13.39432 -13.18242 -13.11115 -12.78778 -12.58779 -12.43937 -12.20160 -12.00966 -11.89822 -11.67942 -11.37138 -11.28423 -11.21201 -11.12946 -11.07780 -11.04237 -10.77857 -10.21264 -9.83576 -9.79054 -9.45423 -9.09018 -9.06974 -8.94067 -8.25667 -6.52036 -6.23362 -3.94187 1.81857 2.26484 2.51791 3.00594 3.06285 3.20907 3.26445 3.30148 3.63919 3.94445 4.05689 4.18692 4.26453 4.29736 4.39091 4.49709 4.68361 4.74466 4.77210 4.84686 4.89889 5.01296 5.02764 5.10045 5.11901 5.15104 5.18878 5.27654 5.30059 5.42255 5.43855 5.47422 5.52799 5.59862 5.66764 5.73416 5.81066 5.86062 5.88084 5.91065 6.10747 6.17303 6.30425 6.54418 7.08768 7.57665 7.64841 7.78163 8.33331 8.57119 9.21995 10.84075 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.043309 B = 0.001366 C = 0.001338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.360772 B =20492.251598 C =20914.405392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.152 4.152 3 C -0.095 4.095 4 C -0.101 4.101 5 C -0.136 4.136 6 C 0.527 3.473 7 O -0.539 6.539 8 N -0.622 5.622 9 C 0.100 3.900 10 C -0.129 4.129 11 C -0.113 4.113 12 H 0.093 0.907 13 C 0.133 3.867 14 N -0.738 5.738 15 C 0.532 3.468 16 O -0.516 6.516 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.113 3.887 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.398 0.602 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.074 0.926 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.551 -16.831 -16.986 33.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.170 4.170 3 C -0.132 4.132 4 C -0.139 4.139 5 C -0.175 4.175 6 C 0.316 3.684 7 O -0.416 6.416 8 N -0.357 5.357 9 C -0.023 4.023 10 C -0.167 4.167 11 C -0.133 4.133 12 H 0.111 0.889 13 C 0.008 3.992 14 N -0.393 5.393 15 C 0.318 3.682 16 O -0.390 6.390 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.010 4.010 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.231 0.769 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.092 0.908 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -23.842 -17.418 -14.409 32.855 hybrid contribution 1.119 0.828 -2.526 2.884 sum -22.724 -16.590 -16.935 32.839 Atomic orbital electron populations 1.23868 0.95985 1.01868 1.01592 1.22956 0.96041 0.98562 0.99486 1.20794 0.98204 0.95587 0.98663 1.21302 0.97795 0.96088 0.98691 1.21683 0.98054 1.00738 0.97072 1.20439 0.80532 0.80764 0.86643 1.90728 1.68087 1.34941 1.47799 1.48541 1.40426 1.17383 1.29306 1.22080 1.00080 0.85402 0.94713 1.22776 0.96268 0.97231 1.00454 1.22613 0.96984 0.96072 0.97598 0.88870 1.21136 0.90196 0.93131 0.94729 1.45948 1.37263 1.45758 1.10345 1.20312 0.81682 0.79647 0.86596 1.90711 1.68046 1.64990 1.15263 1.23530 0.99270 1.01174 1.06429 1.85421 1.41011 1.51193 1.05742 1.22864 1.21142 1.29216 0.95231 0.90932 1.24987 0.97123 0.96349 0.95055 1.70016 1.36931 1.36637 1.06691 0.86175 0.79969 0.79954 0.79443 1.20263 1.20732 1.19698 1.22154 0.89202 0.99603 0.90004 0.88619 0.88546 0.87336 0.90884 0.91424 0.91001 0.90968 0.88860 0.88878 0.91116 0.91090 0.89763 0.89480 0.91132 0.91120 0.76861 0.89227 0.89223 0.92158 0.90774 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.02 14.32 29.01 0.42 -0.61 16 2 C -0.15 -0.84 9.52 -36.03 -0.34 -1.18 16 3 C -0.10 -0.45 5.66 -27.88 -0.16 -0.61 16 4 C -0.10 -0.64 4.49 -26.74 -0.12 -0.76 16 5 C -0.14 -0.75 4.89 -27.88 -0.14 -0.88 16 6 C 0.53 4.86 7.85 -10.99 -0.09 4.77 16 7 O -0.54 -7.20 16.24 5.56 0.09 -7.11 16 8 N -0.62 -4.82 3.33 -170.51 -0.57 -5.39 16 9 C 0.10 0.49 6.48 -3.07 -0.02 0.47 16 10 C -0.13 -0.69 6.37 -24.90 -0.16 -0.84 16 11 C -0.11 -0.78 3.05 -88.46 -0.27 -1.05 16 12 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 13 C 0.13 1.34 5.13 -4.04 -0.02 1.32 16 14 N -0.74 -8.76 5.50 -60.29 -0.33 -9.09 16 15 C 0.53 9.43 7.85 -10.98 -0.09 9.34 16 16 O -0.52 -11.41 15.86 5.56 0.09 -11.32 16 17 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 19 C -0.54 -15.08 9.50 30.94 0.29 -14.78 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -25.97 13.22 55.49 0.73 -25.23 16 23 Si 0.92 21.14 29.55 -169.99 -5.02 16.11 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 C 0.11 0.93 6.38 -2.52 -0.02 0.92 16 28 H 0.10 0.44 7.84 -52.49 -0.41 0.03 16 29 H 0.10 0.43 8.06 -52.49 -0.42 0.01 16 30 H 0.11 0.57 8.06 -52.49 -0.42 0.14 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.28 7.79 -51.93 -0.40 -0.12 16 33 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 34 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 35 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.08 0.50 7.91 -51.93 -0.41 0.09 16 40 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.77 7.97 -51.93 -0.41 0.36 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.40 3.48 8.47 -40.82 -0.35 3.14 16 44 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 45 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 46 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.07 0.63 8.04 -51.93 -0.42 0.21 16 48 H 0.08 0.77 8.03 -51.93 -0.42 0.36 16 LS Contribution 414.63 15.07 6.25 6.25 Total: -1.00 -36.56 414.63 -9.83 -46.39 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -8.28 Total: -2.14 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -0.58 Total: -4.65 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: -0.17 Total: -39.71 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.18 Total: -18.43 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -36.56 -9.83 -46.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688220403.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.379 kcal (2) G-P(sol) polarization free energy of solvation -36.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds