Wall clock time and date at job start Sat Apr 11 2020 06:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 C 1.52996 * 109.47175 * 124.72247 * 3 2 1 5 5 C 1.52994 * 109.47322 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47371 * 180.02562 * 5 4 3 7 7 O 1.21273 * 119.99890 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99700 * 179.97438 * 6 5 4 9 9 C 1.47027 * 125.65223 * 359.69113 * 8 6 5 10 10 C 1.54314 * 107.27362 * 180.96562 * 9 8 6 11 11 C 1.55156 * 102.86478 * 22.52949 * 10 9 8 12 12 H 1.09001 * 111.00328 * 82.37712 * 11 10 9 13 13 C 1.53001 * 111.00110 * 206.22589 * 11 10 9 14 14 N 1.46502 * 109.47493 * 287.19182 * 13 11 10 15 15 C 1.34774 * 120.00180 * 179.97438 * 14 13 11 16 16 O 1.21273 * 120.00087 * 0.02562 * 15 14 13 17 17 C 1.50706 * 119.99641 * 180.02562 * 15 14 13 18 18 S 1.81006 * 109.46676 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99571 * 180.02562 * 18 17 15 20 20 H 1.07994 * 120.00572 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99645 * 180.02562 * 19 18 17 22 22 N 1.31632 * 120.00320 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 120.00018 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47102 * 89.99568 * 23 21 19 25 25 H 1.48501 * 109.47243 * 210.00176 * 23 21 19 26 26 H 1.48500 * 109.46632 * 329.99772 * 23 21 19 27 27 C 1.47428 * 125.64740 * 179.97438 * 8 6 5 28 28 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 29 29 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 30 30 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 31 31 H 1.09002 * 109.47005 * 244.72313 * 3 2 1 32 32 H 1.08999 * 109.47073 * 4.72010 * 3 2 1 33 33 H 1.09002 * 109.47207 * 299.99942 * 4 3 2 34 34 H 1.08999 * 109.47313 * 59.99910 * 4 3 2 35 35 H 1.09002 * 109.46801 * 300.00030 * 5 4 3 36 36 H 1.08997 * 109.47649 * 59.99665 * 5 4 3 37 37 H 1.08998 * 109.87898 * 300.51313 * 9 8 6 38 38 H 1.09001 * 109.87690 * 61.68048 * 9 8 6 39 39 H 1.09002 * 110.93003 * 264.10873 * 10 9 8 40 40 H 1.09005 * 110.73850 * 140.85755 * 10 9 8 41 41 H 1.09004 * 109.47368 * 47.19605 * 13 11 10 42 42 H 1.09005 * 109.46833 * 167.19461 * 13 11 10 43 43 H 0.97001 * 119.99846 * 0.02562 * 14 13 11 44 44 H 1.08999 * 109.47095 * 299.99737 * 17 15 14 45 45 H 1.08998 * 109.47250 * 60.00700 * 17 15 14 46 46 H 0.97001 * 120.00176 * 179.97438 * 22 21 19 47 47 H 1.09005 * 110.36645 * 274.67239 * 27 8 6 48 48 H 1.09004 * 110.36434 * 36.88359 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0301 1.3360 1.1856 5 6 3.7946 2.6612 1.1860 6 6 4.7471 2.6914 2.3534 7 8 4.8081 1.7462 3.1108 8 7 5.5312 3.7688 2.5557 9 6 5.5636 4.9749 1.7155 10 6 6.6229 5.9230 2.3157 11 6 7.5328 4.9586 3.1216 12 1 8.2651 4.4786 2.4724 13 6 8.2218 5.6904 4.2751 14 7 9.2694 6.5651 3.7423 15 6 10.0133 7.3135 4.5806 16 8 9.8159 7.2626 5.7761 17 6 11.0905 8.2136 4.0324 18 16 11.9057 9.0792 5.3971 19 6 13.0822 10.0320 4.4957 20 1 13.1255 9.9588 3.4191 21 6 13.9542 10.8760 5.1694 22 7 13.9019 10.9650 6.4816 23 14 15.2011 11.8868 4.2137 24 1 14.6040 13.1979 3.8537 25 1 16.4076 12.1054 5.0514 26 1 15.5829 11.1602 2.9761 27 6 6.5026 3.9307 3.6528 28 1 -0.5400 0.9353 -0.0045 29 1 -0.5400 -0.9353 0.0045 30 1 1.8500 -0.9353 0.0046 31 1 2.6252 1.4004 -0.9293 32 1 1.3582 2.1318 0.0846 33 1 2.4684 1.2408 2.1149 34 1 3.7354 0.5093 1.1010 35 1 4.3563 2.7569 0.2567 36 1 3.0891 3.4878 1.2708 37 1 5.8377 4.7083 0.6948 38 1 4.5873 5.4595 1.7250 39 1 6.1596 6.6572 2.9748 40 1 7.1890 6.4182 1.5267 41 1 7.4884 6.2892 4.8153 42 1 8.6667 4.9621 4.9532 43 1 9.4271 6.6061 2.7861 44 1 11.8242 7.6151 3.4924 45 1 10.6454 8.9417 3.3543 46 1 14.5115 11.5545 6.9525 47 1 6.0074 4.3156 4.5443 48 1 6.9902 2.9805 3.8710 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688220403.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:16 Heat of formation + Delta-G solvation = -97.232900 kcal Electronic energy + Delta-G solvation = -25500.625307 eV Core-core repulsion = 21680.366490 eV Total energy + Delta-G solvation = -3820.258817 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.26782 -40.53543 -38.84989 -36.84613 -35.91138 -34.56806 -33.56371 -32.78828 -31.02288 -30.19686 -28.42490 -27.65871 -26.18680 -24.17844 -22.76575 -21.83700 -21.44405 -20.76260 -20.02744 -19.79451 -18.15011 -17.88341 -17.68629 -16.99082 -16.86298 -16.64795 -16.45844 -16.33836 -15.75464 -15.39295 -15.13179 -14.78864 -14.69982 -14.42227 -14.41041 -14.16775 -13.95901 -13.75572 -13.49161 -13.25831 -13.14757 -12.96730 -12.87150 -12.64100 -12.61059 -12.46908 -12.27100 -11.93167 -11.76382 -11.71325 -11.70619 -11.60477 -11.12706 -11.00159 -10.88722 -10.24830 -10.18702 -10.10660 -9.69047 -8.64868 -8.33123 -6.11070 1.28599 1.41649 1.43837 1.48762 1.58317 1.60883 1.64218 1.93486 2.28134 2.33938 3.01383 3.30931 3.39349 3.51559 3.75557 3.80836 3.85218 4.03975 4.05705 4.25950 4.28685 4.30299 4.34033 4.36464 4.37403 4.51521 4.54693 4.63344 4.65653 4.70172 4.74064 4.78003 4.89100 4.93355 4.99669 5.05713 5.10871 5.20226 5.23396 5.32609 5.40652 5.43516 5.44864 5.79064 5.91148 6.21426 6.49404 6.53746 7.08491 7.12733 7.27778 8.76108 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.043309 B = 0.001366 C = 0.001338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.360772 B =20492.251598 C =20914.405392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C -0.088 4.088 4 C -0.097 4.097 5 C -0.126 4.126 6 C 0.517 3.483 7 O -0.593 6.593 8 N -0.621 5.621 9 C 0.098 3.902 10 C -0.126 4.126 11 C -0.097 4.097 12 H 0.107 0.893 13 C 0.134 3.866 14 N -0.707 5.707 15 C 0.533 3.467 16 O -0.568 6.568 17 C -0.129 4.129 18 S -0.156 6.156 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.014 3.986 22 N -0.913 5.913 23 Si 0.998 3.002 24 H -0.268 1.268 25 H -0.280 1.280 26 H -0.257 1.257 27 C 0.109 3.891 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.109 0.891 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.418 0.582 44 H 0.110 0.890 45 H 0.113 0.887 46 H 0.271 0.729 47 H 0.066 0.934 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.049 -15.977 -21.017 35.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.185 4.185 3 C -0.125 4.125 4 C -0.136 4.136 5 C -0.165 4.165 6 C 0.308 3.692 7 O -0.474 6.474 8 N -0.354 5.354 9 C -0.024 4.024 10 C -0.164 4.164 11 C -0.116 4.116 12 H 0.125 0.875 13 C 0.009 3.991 14 N -0.362 5.362 15 C 0.319 3.681 16 O -0.446 6.446 17 C -0.280 4.280 18 S 0.071 5.929 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.549 5.549 23 Si 0.819 3.181 24 H -0.193 1.193 25 H -0.205 1.205 26 H -0.181 1.181 27 C -0.015 4.015 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.128 0.872 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.256 0.744 44 H 0.128 0.872 45 H 0.132 0.868 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -24.364 -16.560 -18.523 34.799 hybrid contribution 1.169 0.459 -1.281 1.794 sum -23.195 -16.102 -19.804 34.489 Atomic orbital electron populations 1.24020 0.96029 1.02481 1.01133 1.23108 0.96388 0.99055 0.99941 1.20755 0.97995 0.95432 0.98341 1.21224 0.97627 0.96267 0.98434 1.21709 0.97698 1.00786 0.96315 1.21185 0.80742 0.80204 0.87029 1.90703 1.69798 1.37032 1.49888 1.48653 1.39529 1.18015 1.29247 1.22321 1.00942 0.83958 0.95152 1.22817 0.96096 0.96803 1.00639 1.22430 0.96870 0.95833 0.96479 0.87521 1.21198 0.89414 0.92491 0.95957 1.45615 1.35915 1.43855 1.10805 1.20073 0.81833 0.79970 0.86238 1.90704 1.69585 1.66843 1.17508 1.23370 0.99723 1.01463 1.03430 1.85631 1.42691 1.53030 1.11534 1.23212 1.21179 1.29211 0.95704 0.89759 1.26115 0.99354 0.97583 0.96023 1.70188 1.38178 1.37761 1.08791 0.84968 0.76785 0.78192 0.78128 1.19270 1.20493 1.18090 1.22085 0.89795 0.99105 0.90466 0.87859 0.88209 0.87686 0.89477 0.90350 0.93244 0.92704 0.86188 0.86574 0.88659 0.89381 0.90312 0.87242 0.91846 0.92580 0.74425 0.87168 0.86836 0.92046 0.91617 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.90 14.32 67.78 0.97 -0.93 16 2 C -0.17 -1.72 9.52 25.64 0.24 -1.47 16 3 C -0.09 -0.68 5.66 29.85 0.17 -0.51 16 4 C -0.10 -1.16 4.49 30.59 0.14 -1.02 16 5 C -0.13 -1.08 4.89 29.85 0.15 -0.94 16 6 C 0.52 9.09 7.85 87.66 0.69 9.78 16 7 O -0.59 -16.49 16.24 -3.01 -0.05 -16.54 16 8 N -0.62 -8.54 3.33 -811.76 -2.70 -11.24 16 9 C 0.10 0.57 6.48 86.72 0.56 1.13 16 10 C -0.13 -0.87 6.37 31.78 0.20 -0.67 16 11 C -0.10 -1.12 3.05 -9.40 -0.03 -1.15 16 12 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 13 C 0.13 2.56 5.13 86.38 0.44 3.00 16 14 N -0.71 -15.20 5.50 -463.05 -2.55 -17.74 16 15 C 0.53 18.42 7.85 87.66 0.69 19.11 16 16 O -0.57 -25.62 15.86 -3.01 -0.05 -25.67 16 17 C -0.13 -4.80 6.16 71.24 0.44 -4.37 16 18 S -0.16 -8.50 20.57 -56.49 -1.16 -9.67 16 19 C -0.55 -30.54 9.50 67.95 0.65 -29.89 16 20 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 21 C 0.01 0.78 5.49 84.86 0.47 1.25 16 22 N -0.91 -55.70 13.22 21.65 0.29 -55.41 16 23 Si 1.00 42.83 29.55 68.60 2.03 44.85 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 25 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 26 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 27 C 0.11 1.74 6.38 86.86 0.55 2.29 16 28 H 0.10 0.79 7.84 -2.91 -0.02 0.77 16 29 H 0.10 0.83 8.06 -2.91 -0.02 0.81 16 30 H 0.11 1.10 8.06 -2.91 -0.02 1.07 16 31 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.08 0.45 7.79 -2.39 -0.02 0.43 16 33 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 34 H 0.05 0.83 8.10 -2.39 -0.02 0.81 16 35 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.12 0.50 8.14 -2.39 -0.02 0.49 16 37 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.08 0.69 7.91 -2.39 -0.02 0.67 16 40 H 0.11 0.34 8.14 -2.38 -0.02 0.33 16 41 H 0.06 1.36 7.97 -2.38 -0.02 1.34 16 42 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.42 5.70 8.47 -92.71 -0.79 4.91 16 44 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 45 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 46 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 47 H 0.07 1.14 8.04 -2.38 -0.02 1.13 16 48 H 0.06 1.27 8.03 -2.39 -0.02 1.25 16 Total: -1.00 -84.49 414.63 2.28 -82.22 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.14 Total: 13.58 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 6.33 Total: -4.39 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -4.96 Total: -84.39 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -0.10 Total: -42.20 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.67 kcal Total: -84.49 2.28 -82.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688220403.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.016 kcal (2) G-P(sol) polarization free energy of solvation -84.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds