Wall clock time and date at job start Sat Apr 11 2020 06:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47583 * 2 1 4 4 C 1.52997 * 115.54606 * 34.33102 * 3 2 1 5 5 C 1.53069 * 117.51526 * 248.60937 * 3 2 1 6 6 C 1.52993 * 59.98428 * 252.52214 * 5 3 2 7 7 H 1.08998 * 117.50110 * 252.49915 * 6 5 3 8 8 C 1.50706 * 117.50081 * 107.50431 * 6 5 3 9 9 O 1.21284 * 119.99577 * 291.25326 * 8 6 5 10 10 N 1.34775 * 119.99973 * 111.25143 * 8 6 5 11 11 C 1.47064 * 136.06120 * 359.62962 * 10 8 6 12 12 C 1.53753 * 87.88771 * 152.96573 * 11 10 8 13 13 C 1.52999 * 114.26868 * 139.79577 * 12 11 10 14 14 N 1.46503 * 109.47350 * 91.46990 * 13 12 11 15 15 C 1.34775 * 119.99975 * 180.02562 * 14 13 12 16 16 O 1.21288 * 120.00165 * 359.97438 * 15 14 13 17 17 C 1.50695 * 119.99843 * 180.02562 * 15 14 13 18 18 S 1.81005 * 109.47087 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99963 * 179.97438 * 18 17 15 20 20 H 1.07991 * 120.00152 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99832 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00053 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00072 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46809 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46883 * 119.99899 * 23 21 19 26 26 H 1.48495 * 109.47156 * 239.99915 * 23 21 19 27 27 C 1.47072 * 136.05289 * 179.97438 * 10 8 6 28 28 H 1.08998 * 109.46841 * 300.00283 * 1 2 3 29 29 H 1.09003 * 109.46741 * 59.99615 * 1 2 3 30 30 H 1.08995 * 109.47256 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46977 * 240.00103 * 2 1 3 32 32 H 1.09001 * 109.47415 * 120.00071 * 2 1 3 33 33 H 1.08999 * 109.46995 * 205.66778 * 4 3 2 34 34 H 1.08995 * 109.47203 * 325.67244 * 4 3 2 35 35 H 1.09000 * 109.47281 * 85.67321 * 4 3 2 36 36 H 1.08998 * 117.49630 * 145.03111 * 5 3 2 37 37 H 1.09006 * 117.51460 * 0.02562 * 5 3 2 38 38 H 1.08997 * 113.46561 * 267.69772 * 11 10 8 39 39 H 1.09004 * 113.46688 * 38.13177 * 11 10 8 40 40 H 1.09007 * 114.39343 * 272.67654 * 12 11 10 41 41 H 1.09002 * 109.47081 * 211.47520 * 13 12 11 42 42 H 1.08999 * 109.46947 * 331.47176 * 13 12 11 43 43 H 0.97002 * 119.99816 * 0.02562 * 14 13 12 44 44 H 1.09002 * 109.47203 * 299.99687 * 17 15 14 45 45 H 1.08999 * 109.47333 * 59.99655 * 17 15 14 46 46 H 0.97002 * 120.00049 * 179.97438 * 22 21 19 47 47 H 1.08994 * 113.46827 * 321.87146 * 27 10 8 48 48 H 1.09004 * 113.46181 * 92.31041 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.1854 2.4446 0.7785 5 6 2.7427 1.9441 -1.2640 6 6 3.5550 1.6561 0.0000 7 1 3.9429 2.5105 0.5546 8 6 4.4308 0.4296 -0.0001 9 8 3.9282 -0.6743 0.0015 10 7 5.7722 0.5593 -0.0018 11 6 6.7280 1.6770 -0.0106 12 6 7.7318 0.7496 0.6940 13 6 9.1713 0.8849 0.1936 14 7 9.8785 1.8796 1.0039 15 6 11.1693 2.1668 0.7431 16 8 11.7454 1.6015 -0.1621 17 6 11.8969 3.1896 1.5770 18 16 13.5994 3.3509 0.9839 19 6 14.1986 4.5732 2.1027 20 1 13.5450 4.9779 2.8611 21 6 15.5108 5.0159 2.0091 22 7 16.3076 4.5223 1.0850 23 14 16.1459 6.3123 3.1947 24 1 15.0608 6.7006 4.1312 25 1 17.2898 5.7610 3.9645 26 1 16.5920 7.5052 2.4312 27 6 6.9245 -0.3546 -0.0020 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3353 3.4442 0.3705 34 1 0.1341 2.1704 0.6912 35 1 1.4779 2.4332 1.8285 36 1 2.5956 2.9880 -1.5409 37 1 2.8411 1.2466 -2.0959 38 1 7.0400 1.9735 -1.0120 39 1 6.4128 2.5226 0.6009 40 1 7.6524 0.7432 1.7811 41 1 9.6767 -0.0772 0.2765 42 1 9.1651 1.2034 -0.8488 43 1 9.4178 2.3316 1.7281 44 1 11.3913 4.1518 1.4948 45 1 11.9035 2.8706 2.6192 46 1 17.2246 4.8320 1.0194 47 1 6.7766 -1.2397 0.6166 48 1 7.2884 -0.5940 -1.0012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688650164.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:40 Heat of formation + Delta-G solvation = -40.960854 kcal Electronic energy + Delta-G solvation = -25975.263498 eV Core-core repulsion = 22157.444820 eV Total energy + Delta-G solvation = -3817.818678 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.76706 -40.64790 -39.92887 -37.95182 -35.68184 -34.56083 -33.29347 -32.07904 -30.49159 -29.14093 -27.72635 -27.18377 -26.90848 -24.71307 -24.32079 -21.98090 -21.56894 -20.31059 -19.77697 -19.50347 -18.20103 -17.75728 -17.55268 -16.95514 -16.86054 -16.50151 -16.35171 -15.96733 -15.67201 -15.23686 -15.22313 -15.02735 -14.64217 -14.43150 -14.26575 -14.04682 -13.93220 -13.60214 -13.54635 -13.16673 -13.13286 -12.95693 -12.88849 -12.78894 -12.61162 -12.57904 -12.39683 -12.08210 -11.86040 -11.69463 -11.63675 -11.13926 -11.07814 -10.94116 -10.85188 -10.46784 -10.23220 -10.05799 -9.77576 -8.63426 -8.32814 -6.10143 1.29928 1.41633 1.42912 1.49801 1.59963 1.67260 1.72874 2.27512 2.32940 2.75416 3.01737 3.19049 3.35816 3.37331 3.62997 3.77347 3.81624 3.95390 4.00368 4.09241 4.12176 4.19448 4.35742 4.38672 4.43881 4.53047 4.56034 4.57295 4.59539 4.68945 4.71636 4.75693 4.80567 4.82721 4.91388 4.94671 5.04790 5.12067 5.19861 5.22563 5.26926 5.38901 5.44637 5.48424 5.58679 6.22261 6.56076 6.65783 7.08603 7.09122 7.30786 8.76536 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026020 B = 0.001550 C = 0.001491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.825626 B =18056.601865 C =18772.212209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.072 4.072 3 C -0.095 4.095 4 C -0.120 4.120 5 C -0.136 4.136 6 C -0.188 4.188 7 H 0.141 0.859 8 C 0.562 3.438 9 O -0.576 6.576 10 N -0.650 5.650 11 C 0.107 3.893 12 C -0.115 4.115 13 C 0.135 3.865 14 N -0.709 5.709 15 C 0.534 3.466 16 O -0.567 6.567 17 C -0.130 4.130 18 S -0.155 6.155 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 0.998 3.002 24 H -0.256 1.256 25 H -0.276 1.276 26 H -0.275 1.275 27 C 0.106 3.894 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.129 0.871 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.127 0.873 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.418 0.582 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.270 0.730 47 H 0.076 0.924 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.515 -2.937 0.659 32.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.096 4.096 4 C -0.177 4.177 5 C -0.173 4.173 6 C -0.209 4.209 7 H 0.159 0.841 8 C 0.354 3.646 9 O -0.457 6.457 10 N -0.384 5.384 11 C -0.015 4.015 12 C -0.134 4.134 13 C 0.011 3.989 14 N -0.364 5.364 15 C 0.320 3.680 16 O -0.445 6.445 17 C -0.281 4.281 18 S 0.072 5.928 19 C -0.692 4.692 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.179 1.179 25 H -0.201 1.201 26 H -0.200 1.200 27 C -0.017 4.017 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.147 0.853 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.145 0.855 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.256 0.744 44 H 0.130 0.870 45 H 0.128 0.872 46 H 0.079 0.921 47 H 0.094 0.906 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -31.943 -4.496 -0.918 32.271 hybrid contribution 0.268 1.046 1.587 1.920 sum -31.676 -3.450 0.670 31.870 Atomic orbital electron populations 1.21903 0.94721 1.01658 1.02503 1.20957 0.95646 0.93054 1.01336 1.21731 0.90284 0.97316 1.00239 1.21530 0.99796 0.97055 0.99289 1.23283 1.00274 1.03604 0.90170 1.22336 0.93596 0.98102 1.06852 0.84097 1.19783 0.80233 0.90043 0.74566 1.90701 1.73166 1.29419 1.52381 1.49639 1.03277 1.12866 1.72611 1.23392 0.84646 0.91474 1.01954 1.23095 0.91348 0.96956 1.02043 1.21216 0.90296 0.92242 0.95143 1.45665 1.10356 1.43332 1.37022 1.20019 0.82405 0.82160 0.83433 1.90708 1.67825 1.53054 1.32954 1.23378 0.99698 1.01746 1.03291 1.85600 1.05580 1.54540 1.47074 1.23248 1.00376 1.26153 1.19472 0.89812 1.26106 0.95952 0.99230 0.97834 1.70192 1.07209 1.43301 1.34145 0.84921 0.78331 0.77113 0.77684 1.17935 1.20123 1.20021 1.23030 0.82149 0.94940 1.01555 0.91257 0.92042 0.93095 0.93529 0.93283 0.90845 0.90164 0.91970 0.85340 0.89642 0.88381 0.87856 0.85514 0.91537 0.91137 0.74416 0.86968 0.87215 0.92062 0.90555 0.88700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.92 71.98 0.64 -1.23 16 2 C -0.07 -1.27 4.36 30.59 0.13 -1.14 16 3 C -0.10 -1.26 2.47 -52.16 -0.13 -1.39 16 4 C -0.12 -1.01 9.49 71.98 0.68 -0.33 16 5 C -0.14 -1.58 9.53 30.62 0.29 -1.29 16 6 C -0.19 -2.58 5.73 -11.54 -0.07 -2.64 16 7 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 8 C 0.56 11.26 7.84 87.66 0.69 11.95 16 9 O -0.58 -15.97 13.88 -3.04 -0.04 -16.02 16 10 N -0.65 -10.09 3.69 -857.78 -3.16 -13.26 16 11 C 0.11 1.00 8.00 83.27 0.67 1.67 16 12 C -0.12 -1.17 4.11 -10.38 -0.04 -1.22 16 13 C 0.14 2.21 5.59 86.38 0.48 2.69 16 14 N -0.71 -14.08 5.56 -463.05 -2.57 -16.65 16 15 C 0.53 17.70 7.85 87.66 0.69 18.39 16 16 O -0.57 -24.59 15.86 -3.05 -0.05 -24.64 16 17 C -0.13 -4.75 6.16 71.23 0.44 -4.31 16 18 S -0.16 -8.35 20.57 -56.49 -1.16 -9.51 16 19 C -0.54 -30.33 9.50 67.95 0.65 -29.68 16 20 H 0.08 4.31 7.80 -2.92 -0.02 4.28 16 21 C 0.01 0.75 5.49 84.86 0.47 1.22 16 22 N -0.91 -55.27 13.22 21.65 0.29 -54.98 16 23 Si 1.00 42.72 29.55 68.60 2.03 44.75 16 24 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 25 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 27 C 0.11 1.46 8.19 83.17 0.68 2.14 16 28 H 0.07 0.69 6.45 -2.39 -0.02 0.67 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 1.02 7.02 -2.38 -0.02 1.00 16 32 H 0.05 1.08 7.26 -2.39 -0.02 1.07 16 33 H 0.07 0.42 7.90 -2.39 -0.02 0.40 16 34 H 0.08 0.58 5.58 -2.39 -0.01 0.57 16 35 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.13 0.88 8.05 -2.39 -0.02 0.86 16 37 H 0.09 1.23 8.05 -2.38 -0.02 1.21 16 38 H 0.10 0.86 7.88 -2.39 -0.02 0.84 16 39 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.13 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.07 1.26 7.81 -2.39 -0.02 1.24 16 43 H 0.42 5.23 8.47 -92.71 -0.79 4.44 16 44 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 45 H 0.11 3.59 8.14 -2.40 -0.02 3.57 16 46 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 47 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.09 1.22 8.10 -2.38 -0.02 1.20 16 Total: -1.00 -81.88 407.01 1.76 -80.11 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.17 Total: 15.36 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 6.27 Total: -5.17 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -5.45 Total: -84.89 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -0.09 Total: -40.66 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.51 kcal Total: -81.88 1.76 -80.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688650164.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.153 kcal (2) G-P(sol) polarization free energy of solvation -81.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds