Wall clock time and date at job start Sat Apr 11 2020 06:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 120.00098 * 2 1 4 4 C 1.52997 * 109.46786 * 125.00361 * 3 2 1 5 5 C 1.52998 * 109.47144 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47533 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99484 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00045 * 180.27553 * 6 5 4 9 9 C 1.46506 * 119.99612 * 179.72729 * 8 6 5 10 10 C 1.53003 * 109.46735 * 175.03547 * 9 8 6 11 11 H 1.08998 * 109.87204 * 304.44435 * 10 9 8 12 12 C 1.54322 * 109.88528 * 65.46491 * 10 9 8 13 13 C 1.55150 * 102.94361 * 141.60913 * 12 10 9 14 14 C 1.54906 * 101.58361 * 324.49500 * 13 12 10 15 15 N 1.47020 * 109.87950 * 183.27200 * 10 9 8 16 16 C 1.34776 * 125.65236 * 61.61953 * 15 10 9 17 17 O 1.21289 * 119.99734 * 5.08234 * 16 15 10 18 18 C 1.50705 * 120.00335 * 185.08217 * 16 15 10 19 19 S 1.80996 * 109.47038 * 180.02562 * 18 16 15 20 20 C 1.76198 * 99.99931 * 180.02562 * 19 18 16 21 21 H 1.07996 * 119.99955 * 359.97438 * 20 19 18 22 22 C 1.38798 * 120.00208 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99883 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00047 * 179.97438 * 22 20 19 25 25 H 1.48490 * 109.47299 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47073 * 119.99708 * 24 22 20 27 27 H 1.48502 * 109.46826 * 239.99292 * 24 22 20 28 28 H 1.08002 * 119.99849 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.00061 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.99849 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.46761 * 5.00872 * 3 2 1 32 32 H 1.08997 * 109.47255 * 245.00589 * 3 2 1 33 33 H 1.08999 * 109.47053 * 60.00690 * 4 3 2 34 34 H 1.08997 * 109.47464 * 300.00688 * 4 3 2 35 35 H 1.09008 * 109.46957 * 60.00302 * 5 4 3 36 36 H 1.08997 * 109.47393 * 300.00598 * 5 4 3 37 37 H 0.96995 * 120.00260 * 359.72468 * 8 6 5 38 38 H 1.08998 * 109.46909 * 295.03169 * 9 8 6 39 39 H 1.08995 * 109.47251 * 55.03807 * 9 8 6 40 40 H 1.09009 * 110.71653 * 259.97262 * 12 10 9 41 41 H 1.09001 * 110.72182 * 23.06094 * 12 10 9 42 42 H 1.09003 * 111.00600 * 82.57432 * 13 12 10 43 43 H 1.09007 * 111.00455 * 206.42156 * 13 12 10 44 44 H 1.09001 * 110.36592 * 155.84489 * 14 13 12 45 45 H 1.08995 * 110.36977 * 278.17313 * 14 13 12 46 46 H 1.08997 * 109.47109 * 299.99892 * 18 16 15 47 47 H 1.08996 * 109.46484 * 60.00077 * 18 16 15 48 48 H 0.97002 * 120.00522 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7997 2.6582 1.1820 6 6 4.7563 2.6860 2.3462 7 8 4.8204 1.7388 3.1010 8 7 5.5367 3.7654 2.5515 9 6 6.4623 3.7947 3.6868 10 6 7.3103 5.0666 3.6206 11 1 7.8190 5.1230 2.6582 12 6 6.4123 6.3068 3.8132 13 6 7.2963 7.2453 4.6762 14 6 8.0369 6.2295 5.5814 15 7 8.2958 5.0677 4.7115 16 6 9.2739 4.1572 4.8875 17 8 9.4527 3.2912 4.0573 18 6 10.1452 4.2151 6.1157 19 16 11.3547 2.8697 6.0613 20 6 12.2128 3.1685 7.5709 21 1 11.9217 3.9942 8.2032 22 6 13.2636 2.3433 7.9470 23 7 13.6187 1.3372 7.1762 24 14 14.1738 2.6606 9.5472 25 1 13.5854 3.8434 10.2252 26 1 14.0525 1.4723 10.4296 27 1 15.6075 2.9183 9.2583 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0897 32 1 2.6212 1.4027 -0.9314 33 1 3.7400 0.5065 1.0919 34 1 2.4774 1.2353 2.1130 35 1 3.0945 3.4845 1.2720 36 1 4.3573 2.7563 0.2507 37 1 5.4856 4.5227 1.9477 38 1 5.8957 3.7839 4.6178 39 1 7.1134 2.9215 3.6474 40 1 6.1820 6.7690 2.8531 41 1 5.4964 6.0415 4.3413 42 1 7.9994 7.8002 4.0551 43 1 6.6828 7.9230 5.2701 44 1 8.9757 6.6531 5.9379 45 1 7.4064 5.9406 6.4223 46 1 10.6672 5.1714 6.1461 47 1 9.5252 4.1110 7.0061 48 1 14.3528 0.7602 7.4391 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688841006.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:09 Heat of formation + Delta-G solvation = -69.329894 kcal Electronic energy + Delta-G solvation = -26334.934078 eV Core-core repulsion = 22515.885226 eV Total energy + Delta-G solvation = -3819.048852 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.37339 -39.53935 -37.35409 -36.33274 -34.84488 -32.73997 -32.42674 -31.84824 -30.53547 -28.70213 -27.62690 -25.52302 -25.35302 -22.95921 -22.30681 -21.23384 -20.57380 -20.14188 -19.02695 -17.73130 -17.19865 -17.01519 -16.47695 -16.25077 -15.52661 -15.40624 -14.97031 -14.80226 -14.62248 -14.37864 -14.10390 -13.91467 -13.73033 -13.67112 -13.25000 -13.02847 -12.77507 -12.60191 -12.53242 -12.28832 -12.04371 -11.86927 -11.74236 -11.50724 -11.24696 -11.13754 -11.07049 -11.04671 -11.02200 -11.00957 -10.75570 -10.00621 -9.80669 -9.66592 -9.46355 -9.15883 -9.07030 -8.61292 -8.22660 -6.49887 -6.21262 -3.91984 1.94182 2.53796 2.65609 3.00096 3.15023 3.21966 3.28714 3.32847 3.62780 4.18317 4.23100 4.28168 4.41002 4.48303 4.55699 4.64967 4.84982 4.87292 4.91634 5.02353 5.06613 5.12809 5.13965 5.16014 5.23436 5.30294 5.39408 5.43218 5.47196 5.52763 5.54532 5.59607 5.63099 5.79458 5.82659 5.87979 5.90851 5.98032 6.03136 6.12859 6.20689 6.29543 6.42786 6.45010 7.31923 7.59039 7.60900 8.11109 8.35703 8.50624 9.24028 10.86234 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014144 B = 0.001985 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.184919 B =14099.723362 C =15676.577588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.095 4.095 4 C -0.102 4.102 5 C -0.139 4.139 6 C 0.509 3.491 7 O -0.534 6.534 8 N -0.728 5.728 9 C 0.107 3.893 10 C 0.130 3.870 11 H 0.080 0.920 12 C -0.130 4.130 13 C -0.131 4.131 14 C 0.100 3.900 15 N -0.621 5.621 16 C 0.549 3.451 17 O -0.509 6.509 18 C -0.147 4.147 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.398 0.602 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.971 11.846 -12.787 29.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.169 4.169 3 C -0.132 4.132 4 C -0.140 4.140 5 C -0.179 4.179 6 C 0.295 3.705 7 O -0.410 6.410 8 N -0.381 5.381 9 C -0.017 4.017 10 C 0.025 3.975 11 H 0.098 0.902 12 C -0.168 4.168 13 C -0.169 4.169 14 C -0.023 4.023 15 N -0.359 5.359 16 C 0.337 3.663 17 O -0.383 6.383 18 C -0.297 4.297 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.206 1.206 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.232 0.768 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.437 9.637 -13.462 28.694 hybrid contribution 0.410 1.596 1.763 2.413 sum -23.027 11.233 -11.699 28.165 Atomic orbital electron populations 1.23844 0.95975 1.01774 1.01957 1.22982 0.96041 0.98680 0.99149 1.20800 0.98153 0.95472 0.98806 1.21297 0.97773 0.96313 0.98579 1.21690 0.98133 1.00690 0.97394 1.20736 0.81086 0.82099 0.86594 1.90756 1.67764 1.35098 1.47362 1.45883 1.41609 1.19760 1.30812 1.21743 0.91651 0.99504 0.88849 1.21604 0.89315 0.94148 0.92413 0.90154 1.22767 0.98182 0.94707 1.01180 1.22768 0.98769 0.97096 0.98309 1.22324 1.00831 0.85706 0.93458 1.48509 1.31254 1.27873 1.28258 1.20108 0.78865 0.79737 0.87557 1.90724 1.68422 1.34880 1.44242 1.23517 1.01844 1.07108 0.97252 1.85435 1.34236 1.33274 1.30366 1.22896 1.20059 1.18048 1.07316 0.90869 1.24995 0.96256 0.94462 0.97873 1.70029 1.27630 1.15775 1.36793 0.86112 0.79212 0.78326 0.81813 1.19616 1.20548 1.20569 0.88694 0.88590 0.87280 0.91516 0.90867 0.90833 0.91026 0.88969 0.88805 0.76846 0.91514 0.89520 0.90025 0.90199 0.90380 0.89729 0.90059 0.91267 0.89292 0.89180 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.29 14.32 29.01 0.42 -0.88 16 2 C -0.15 -1.06 9.52 -36.02 -0.34 -1.41 16 3 C -0.10 -0.60 5.66 -27.88 -0.16 -0.75 16 4 C -0.10 -0.84 4.49 -26.73 -0.12 -0.96 16 5 C -0.14 -0.97 5.70 -27.88 -0.16 -1.13 16 6 C 0.51 5.84 7.83 -10.99 -0.09 5.75 16 7 O -0.53 -8.92 15.98 5.55 0.09 -8.83 16 8 N -0.73 -7.07 5.39 -60.29 -0.33 -7.39 16 9 C 0.11 1.38 5.05 -4.04 -0.02 1.36 16 10 C 0.13 1.44 2.95 -66.95 -0.20 1.24 16 11 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 12 C -0.13 -0.89 6.01 -24.90 -0.15 -1.04 16 13 C -0.13 -0.90 7.08 -24.59 -0.17 -1.07 16 14 C 0.10 1.00 6.65 -2.53 -0.02 0.98 16 15 N -0.62 -8.63 3.06 -163.01 -0.50 -9.13 16 16 C 0.55 10.53 7.60 -10.98 -0.08 10.45 16 17 O -0.51 -11.77 15.05 5.55 0.08 -11.69 16 18 C -0.15 -3.02 5.25 36.01 0.19 -2.83 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 20 C -0.53 -15.35 9.50 30.94 0.29 -15.06 16 21 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 24 Si 0.92 21.55 29.55 -169.99 -5.02 16.52 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H 0.09 0.54 7.84 -52.49 -0.41 0.13 16 29 H 0.10 0.55 8.06 -52.49 -0.42 0.13 16 30 H 0.11 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.07 0.36 7.79 -51.93 -0.40 -0.05 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.09 0.42 8.14 -51.92 -0.42 0.00 16 36 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.40 2.38 8.20 -40.82 -0.33 2.04 16 38 H 0.07 0.90 8.06 -51.93 -0.42 0.48 16 39 H 0.09 1.54 6.92 -51.93 -0.36 1.18 16 40 H 0.08 0.38 8.14 -51.92 -0.42 -0.05 16 41 H 0.08 0.52 7.79 -51.93 -0.40 0.12 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.81 7.51 -51.93 -0.39 0.42 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.09 1.68 7.77 -51.92 -0.40 1.27 16 47 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 48 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 410.83 15.07 6.19 6.19 Total: -1.00 -37.61 410.83 -9.83 -47.44 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -8.16 Total: -0.28 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -0.70 Total: -3.32 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: -0.09 Total: -42.18 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: 0.17 Total: -20.52 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -37.61 -9.83 -47.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688841006.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.885 kcal (2) G-P(sol) polarization free energy of solvation -37.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds