Wall clock time and date at job start Sat Apr 11 2020 06:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 120.00098 * 2 1 4 4 C 1.52997 * 109.46786 * 125.00361 * 3 2 1 5 5 C 1.52998 * 109.47144 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47533 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99484 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00045 * 180.27553 * 6 5 4 9 9 C 1.46506 * 119.99612 * 179.72729 * 8 6 5 10 10 C 1.53003 * 109.46735 * 175.03547 * 9 8 6 11 11 H 1.08998 * 109.87204 * 304.44435 * 10 9 8 12 12 C 1.54322 * 109.88528 * 65.46491 * 10 9 8 13 13 C 1.55150 * 102.94361 * 141.60913 * 12 10 9 14 14 C 1.54906 * 101.58361 * 324.49500 * 13 12 10 15 15 N 1.47020 * 109.87950 * 183.27200 * 10 9 8 16 16 C 1.34776 * 125.65236 * 61.61953 * 15 10 9 17 17 O 1.21289 * 119.99734 * 5.08234 * 16 15 10 18 18 C 1.50705 * 120.00335 * 185.08217 * 16 15 10 19 19 S 1.80996 * 109.47038 * 180.02562 * 18 16 15 20 20 C 1.76198 * 99.99931 * 180.02562 * 19 18 16 21 21 H 1.07996 * 119.99955 * 359.97438 * 20 19 18 22 22 C 1.38798 * 120.00208 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99883 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00047 * 179.97438 * 22 20 19 25 25 H 1.48490 * 109.47299 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47073 * 119.99708 * 24 22 20 27 27 H 1.48502 * 109.46826 * 239.99292 * 24 22 20 28 28 H 1.08002 * 119.99849 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.00061 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.99849 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.46761 * 5.00872 * 3 2 1 32 32 H 1.08997 * 109.47255 * 245.00589 * 3 2 1 33 33 H 1.08999 * 109.47053 * 60.00690 * 4 3 2 34 34 H 1.08997 * 109.47464 * 300.00688 * 4 3 2 35 35 H 1.09008 * 109.46957 * 60.00302 * 5 4 3 36 36 H 1.08997 * 109.47393 * 300.00598 * 5 4 3 37 37 H 0.96995 * 120.00260 * 359.72468 * 8 6 5 38 38 H 1.08998 * 109.46909 * 295.03169 * 9 8 6 39 39 H 1.08995 * 109.47251 * 55.03807 * 9 8 6 40 40 H 1.09009 * 110.71653 * 259.97262 * 12 10 9 41 41 H 1.09001 * 110.72182 * 23.06094 * 12 10 9 42 42 H 1.09003 * 111.00600 * 82.57432 * 13 12 10 43 43 H 1.09007 * 111.00455 * 206.42156 * 13 12 10 44 44 H 1.09001 * 110.36592 * 155.84489 * 14 13 12 45 45 H 1.08995 * 110.36977 * 278.17313 * 14 13 12 46 46 H 1.08997 * 109.47109 * 299.99892 * 18 16 15 47 47 H 1.08996 * 109.46484 * 60.00077 * 18 16 15 48 48 H 0.97002 * 120.00522 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7997 2.6582 1.1820 6 6 4.7563 2.6860 2.3462 7 8 4.8204 1.7388 3.1010 8 7 5.5367 3.7654 2.5515 9 6 6.4623 3.7947 3.6868 10 6 7.3103 5.0666 3.6206 11 1 7.8190 5.1230 2.6582 12 6 6.4123 6.3068 3.8132 13 6 7.2963 7.2453 4.6762 14 6 8.0369 6.2295 5.5814 15 7 8.2958 5.0677 4.7115 16 6 9.2739 4.1572 4.8875 17 8 9.4527 3.2912 4.0573 18 6 10.1452 4.2151 6.1157 19 16 11.3547 2.8697 6.0613 20 6 12.2128 3.1685 7.5709 21 1 11.9217 3.9942 8.2032 22 6 13.2636 2.3433 7.9470 23 7 13.6187 1.3372 7.1762 24 14 14.1738 2.6606 9.5472 25 1 13.5854 3.8434 10.2252 26 1 14.0525 1.4723 10.4296 27 1 15.6075 2.9183 9.2583 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0897 32 1 2.6212 1.4027 -0.9314 33 1 3.7400 0.5065 1.0919 34 1 2.4774 1.2353 2.1130 35 1 3.0945 3.4845 1.2720 36 1 4.3573 2.7563 0.2507 37 1 5.4856 4.5227 1.9477 38 1 5.8957 3.7839 4.6178 39 1 7.1134 2.9215 3.6474 40 1 6.1820 6.7690 2.8531 41 1 5.4964 6.0415 4.3413 42 1 7.9994 7.8002 4.0551 43 1 6.6828 7.9230 5.2701 44 1 8.9757 6.6531 5.9379 45 1 7.4064 5.9406 6.4223 46 1 10.6672 5.1714 6.1461 47 1 9.5252 4.1110 7.0061 48 1 14.3528 0.7602 7.4391 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688841006.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:08 Heat of formation + Delta-G solvation = -95.612499 kcal Electronic energy + Delta-G solvation = -26336.073777 eV Core-core repulsion = 22515.885226 eV Total energy + Delta-G solvation = -3820.188551 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.46082 -40.60603 -38.60726 -36.92146 -35.86102 -34.61571 -33.40788 -32.96449 -31.44838 -30.11216 -28.28328 -27.69682 -26.23192 -23.96954 -23.03667 -22.02898 -21.43696 -20.71830 -20.34410 -19.52656 -18.28437 -18.06814 -17.61313 -17.00241 -16.91376 -16.57275 -16.41422 -16.21698 -15.86730 -15.41494 -15.32770 -14.91280 -14.69892 -14.43334 -14.34629 -14.03706 -13.99751 -13.72011 -13.67992 -13.29324 -13.18699 -12.96548 -12.90856 -12.63435 -12.61744 -12.45598 -12.13538 -11.96060 -11.76737 -11.72936 -11.64178 -11.62950 -11.18393 -11.07438 -10.91972 -10.31127 -10.18903 -10.18643 -9.78950 -8.71576 -8.37331 -6.16603 1.19357 1.39966 1.40158 1.42695 1.49165 1.55073 1.63252 1.88777 2.24380 2.37957 2.96933 3.20560 3.46502 3.52882 3.77914 3.80631 3.86340 3.90201 4.06144 4.08314 4.16865 4.26319 4.33593 4.36958 4.38676 4.41899 4.60937 4.66533 4.70489 4.74138 4.79186 4.81586 4.93540 4.94108 5.00560 5.08342 5.12858 5.22939 5.25860 5.36243 5.38953 5.40429 5.45466 5.79141 5.91339 6.17180 6.32944 6.53289 7.03582 7.06280 7.27281 8.72380 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014144 B = 0.001985 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.184919 B =14099.723362 C =15676.577588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.170 4.170 3 C -0.086 4.086 4 C -0.101 4.101 5 C -0.126 4.126 6 C 0.500 3.500 7 O -0.597 6.597 8 N -0.709 5.709 9 C 0.117 3.883 10 C 0.127 3.873 11 H 0.077 0.923 12 C -0.116 4.116 13 C -0.119 4.119 14 C 0.084 3.916 15 N -0.613 5.613 16 C 0.544 3.456 17 O -0.562 6.562 18 C -0.119 4.119 19 S -0.154 6.154 20 C -0.545 4.545 21 H 0.084 0.916 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 1.002 2.998 25 H -0.255 1.255 26 H -0.275 1.275 27 H -0.272 1.272 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.130 0.870 36 H 0.121 0.879 37 H 0.421 0.579 38 H 0.058 0.942 39 H 0.028 0.972 40 H 0.118 0.882 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.115 0.885 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.109 0.891 47 H 0.103 0.897 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.046 16.011 -12.832 33.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.189 4.189 3 C -0.123 4.123 4 C -0.139 4.139 5 C -0.166 4.166 6 C 0.289 3.711 7 O -0.478 6.478 8 N -0.363 5.363 9 C -0.009 4.009 10 C 0.023 3.977 11 H 0.095 0.905 12 C -0.154 4.154 13 C -0.156 4.156 14 C -0.038 4.038 15 N -0.348 5.348 16 C 0.333 3.667 17 O -0.440 6.440 18 C -0.270 4.270 19 S 0.073 5.927 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.192 4.192 23 N -0.549 5.549 24 Si 0.823 3.177 25 H -0.178 1.178 26 H -0.200 1.200 27 H -0.197 1.197 28 H 0.125 0.875 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.148 0.852 36 H 0.139 0.861 37 H 0.259 0.741 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.136 0.864 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.133 0.867 44 H 0.101 0.899 45 H 0.098 0.902 46 H 0.128 0.872 47 H 0.121 0.879 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -25.561 13.902 -13.535 32.091 hybrid contribution 0.932 0.332 1.735 1.997 sum -24.629 14.234 -11.801 30.797 Atomic orbital electron populations 1.24016 0.95830 1.02594 1.00882 1.23111 0.96539 0.99027 1.00179 1.20749 0.97905 0.95531 0.98140 1.21242 0.97614 0.96324 0.98706 1.21733 0.97721 1.01108 0.96015 1.21697 0.81200 0.81208 0.87002 1.90736 1.69720 1.37431 1.49866 1.45696 1.40140 1.20329 1.30132 1.21415 0.91367 0.98313 0.89804 1.21869 0.89082 0.95407 0.91333 0.90465 1.22806 0.97199 0.92022 1.03373 1.22786 0.98699 0.96329 0.97815 1.22754 1.01855 0.85049 0.94102 1.48476 1.29723 1.27257 1.29374 1.19841 0.79940 0.80314 0.86643 1.90703 1.70289 1.37331 1.45715 1.23309 1.00357 1.04536 0.98845 1.85639 1.37451 1.38108 1.31509 1.23224 1.20367 1.18495 1.07224 0.89822 1.26173 0.97124 0.93891 1.02039 1.70199 1.28436 1.17043 1.39194 0.84868 0.77665 0.78746 0.76423 1.17849 1.20001 1.19740 0.87455 0.88271 0.88197 0.89685 0.89612 0.93569 0.93061 0.85155 0.86140 0.74125 0.92354 0.95341 0.86419 0.89229 0.89758 0.86666 0.89853 0.90215 0.87237 0.87854 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.34 14.32 67.78 0.97 -1.37 16 2 C -0.17 -2.34 9.52 25.65 0.24 -2.09 16 3 C -0.09 -0.93 5.66 29.85 0.17 -0.77 16 4 C -0.10 -1.64 4.49 30.59 0.14 -1.50 16 5 C -0.13 -1.50 5.70 29.85 0.17 -1.33 16 6 C 0.50 11.46 7.83 87.66 0.69 12.14 16 7 O -0.60 -21.34 15.98 -3.04 -0.05 -21.39 16 8 N -0.71 -13.07 5.39 -463.05 -2.50 -15.57 16 9 C 0.12 3.10 5.05 86.38 0.44 3.53 16 10 C 0.13 2.65 2.95 45.34 0.13 2.78 16 11 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 12 C -0.12 -1.07 6.01 31.78 0.19 -0.88 16 13 C -0.12 -1.07 7.08 31.98 0.23 -0.84 16 14 C 0.08 1.45 6.65 86.85 0.58 2.03 16 15 N -0.61 -16.68 3.06 -788.04 -2.42 -19.09 16 16 C 0.54 21.64 7.60 87.66 0.67 22.30 16 17 O -0.56 -27.81 15.05 -3.06 -0.05 -27.85 16 18 C -0.12 -5.01 5.25 71.24 0.37 -4.64 16 19 S -0.15 -8.91 20.57 -56.49 -1.16 -10.07 16 20 C -0.55 -31.88 9.50 67.95 0.65 -31.23 16 21 H 0.08 4.53 7.80 -2.91 -0.02 4.51 16 22 C 0.01 0.72 5.49 84.86 0.47 1.18 16 23 N -0.91 -57.30 13.22 21.65 0.29 -57.01 16 24 Si 1.00 44.32 29.55 68.60 2.03 46.35 16 25 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 27 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 28 H 0.11 0.99 7.84 -2.91 -0.02 0.97 16 29 H 0.10 1.07 8.06 -2.91 -0.02 1.05 16 30 H 0.10 1.49 8.06 -2.91 -0.02 1.47 16 31 H 0.08 0.63 7.79 -2.39 -0.02 0.61 16 32 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 34 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 35 H 0.13 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.42 3.74 8.20 -92.71 -0.76 2.98 16 38 H 0.06 1.62 8.06 -2.39 -0.02 1.60 16 39 H 0.03 1.10 6.92 -2.39 -0.02 1.08 16 40 H 0.12 0.36 8.14 -2.38 -0.02 0.34 16 41 H 0.09 0.75 7.79 -2.39 -0.02 0.73 16 42 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 44 H 0.08 1.44 7.51 -2.39 -0.02 1.42 16 45 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.11 4.10 7.77 -2.40 -0.02 4.08 16 47 H 0.10 4.02 8.14 -2.40 -0.02 4.00 16 48 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -91.50 410.83 2.41 -89.09 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.17 Total: 16.22 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 6.09 Total: -0.67 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -4.63 Total: -91.67 kcal Atomic # 8 Polarization: -49.14 SS G_CDS: -0.09 Total: -49.24 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.16 Total: -10.07 kcal Total: -91.50 2.41 -89.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688841006.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.524 kcal (2) G-P(sol) polarization free energy of solvation -91.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds