Wall clock time and date at job start Sat Apr 11 2020 06:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47059 * 2 1 4 4 C 1.32993 * 120.00049 * 124.54728 * 3 2 1 5 5 C 1.50695 * 120.00222 * 185.46476 * 4 3 2 6 6 C 1.47099 * 119.99724 * 5.46505 * 4 3 2 7 7 O 1.21609 * 120.00073 * 256.63456 * 6 4 3 8 8 N 1.34775 * 119.99818 * 76.64424 * 6 4 3 9 9 C 1.47418 * 125.65062 * 6.50816 * 8 6 4 10 10 C 1.54913 * 104.83256 * 155.91200 * 9 8 6 11 11 C 1.55399 * 101.66786 * 36.92381 * 10 9 8 12 12 C 1.47027 * 125.64567 * 186.55378 * 8 6 4 13 13 H 1.09001 * 109.88504 * 300.58903 * 12 8 6 14 14 C 1.52998 * 109.88229 * 61.60178 * 12 8 6 15 15 N 1.46493 * 109.47361 * 284.63873 * 14 12 8 16 16 C 1.34773 * 120.00202 * 172.77486 * 15 14 12 17 17 O 1.21285 * 119.99785 * 0.27499 * 16 15 14 18 18 C 1.50698 * 120.00224 * 180.27770 * 16 15 14 19 19 S 1.81005 * 109.47211 * 179.97438 * 18 16 15 20 20 C 1.76199 * 99.99833 * 179.97438 * 19 18 16 21 21 H 1.07993 * 120.00544 * 0.02562 * 20 19 18 22 22 C 1.38802 * 119.99951 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99658 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00335 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46986 * 90.00476 * 24 22 20 26 26 H 1.48500 * 109.47425 * 210.00684 * 24 22 20 27 27 H 1.48501 * 109.46824 * 330.00633 * 24 22 20 28 28 H 1.08997 * 109.47435 * 299.99765 * 1 2 3 29 29 H 1.09002 * 109.47239 * 60.00289 * 1 2 3 30 30 H 1.09007 * 109.47342 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46894 * 239.99697 * 2 1 3 32 32 H 1.08996 * 109.47078 * 120.00389 * 2 1 3 33 33 H 1.08002 * 119.99953 * 304.55159 * 3 2 1 34 34 H 1.09001 * 109.47200 * 275.04915 * 5 4 3 35 35 H 1.09004 * 109.46964 * 35.04068 * 5 4 3 36 36 H 1.08993 * 109.47579 * 155.04059 * 5 4 3 37 37 H 1.09001 * 110.36578 * 274.74658 * 9 8 6 38 38 H 1.08997 * 110.37001 * 37.07469 * 9 8 6 39 39 H 1.08999 * 111.00588 * 155.08222 * 10 9 8 40 40 H 1.09005 * 111.00156 * 278.89213 * 10 9 8 41 41 H 1.09002 * 110.85124 * 206.30228 * 11 10 9 42 42 H 1.08997 * 110.69551 * 82.95555 * 11 10 9 43 43 H 1.09006 * 109.46682 * 164.64147 * 14 12 8 44 44 H 1.08995 * 109.47391 * 44.64530 * 14 12 8 45 45 H 0.97003 * 120.00042 * 353.05263 * 15 14 12 46 46 H 1.09000 * 109.47095 * 299.99777 * 18 16 15 47 47 H 1.09003 * 109.47520 * 59.99952 * 18 16 15 48 48 H 0.97000 * 119.99462 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8697 1.8300 0.9486 5 6 3.2754 3.2795 1.0216 6 6 3.4000 0.8677 1.9267 7 8 2.9514 0.8395 3.0567 8 7 4.3832 0.0174 1.5705 9 6 5.1086 0.0319 0.2873 10 6 6.4635 -0.6554 0.5900 11 6 6.0374 -1.7612 1.5952 12 6 4.9091 -1.0788 2.3972 13 1 5.3064 -0.6812 3.3311 14 6 3.7972 -2.0874 2.6925 15 7 2.8956 -1.5371 3.7075 16 6 1.7579 -2.1875 4.0222 17 8 1.4830 -3.2310 3.4685 18 6 0.8274 -1.6181 5.0619 19 16 -0.6006 -2.7130 5.2579 20 6 -1.4940 -1.8320 6.4949 21 1 -1.1025 -0.9049 6.8867 22 6 -2.7017 -2.3290 6.9652 23 7 -3.1792 -3.4587 6.4873 24 14 -3.6486 -1.3954 8.2772 25 1 -4.5799 -0.4379 7.6284 26 1 -4.4226 -2.3544 9.1058 27 1 -2.6960 -0.6519 9.1403 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8899 33 1 1.7122 2.1067 -0.7704 34 1 4.1150 3.4561 0.3492 35 1 2.4349 3.9074 0.7259 36 1 3.5698 3.5236 2.0423 37 1 4.5578 -0.5309 -0.4663 38 1 5.2695 1.0571 -0.0460 39 1 6.8909 -1.0913 -0.3131 40 1 7.1613 0.0430 1.0521 41 1 6.8664 -2.0313 2.2493 42 1 5.6600 -2.6370 1.0674 43 1 4.2363 -3.0146 3.0608 44 1 3.2370 -2.2884 1.7794 45 1 3.1155 -0.7025 4.1503 46 1 1.3535 -1.5329 6.0127 47 1 0.4879 -0.6321 4.7448 48 1 -4.0230 -3.8062 6.8162 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688841357.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:12 Heat of formation + Delta-G solvation = -60.960430 kcal Electronic energy + Delta-G solvation = -28380.944244 eV Core-core repulsion = 24562.258319 eV Total energy + Delta-G solvation = -3818.685925 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.81564 -38.74049 -37.87974 -35.99137 -34.22768 -32.45183 -32.32892 -31.74017 -30.66447 -28.64450 -27.21262 -25.54117 -25.20085 -24.20389 -22.50026 -22.01191 -20.58613 -20.04703 -18.58383 -17.73244 -17.11718 -16.82423 -15.89781 -15.81723 -15.50793 -14.96108 -14.91141 -14.71402 -14.33731 -13.99676 -13.81410 -13.78678 -13.40265 -13.35233 -13.29431 -13.01646 -12.79377 -12.73087 -12.52240 -12.38009 -12.21849 -12.06890 -11.72754 -11.63544 -11.50072 -11.19954 -11.14911 -11.06481 -10.98300 -10.91774 -10.66772 -10.02614 -9.70128 -9.19638 -9.14095 -8.98975 -8.96449 -8.52830 -8.10124 -6.37224 -6.12026 -3.80664 1.48473 2.45205 2.72648 3.20446 3.28868 3.34159 3.35537 3.43423 3.88235 4.03058 4.16188 4.30817 4.44159 4.47986 4.62623 4.70484 4.89753 4.91839 5.03026 5.13123 5.18644 5.20810 5.22822 5.27664 5.30964 5.32102 5.34853 5.42168 5.43865 5.50325 5.55349 5.63319 5.68163 5.81655 5.86981 5.97523 5.97895 6.05594 6.12071 6.17735 6.27971 6.35857 6.38921 6.90910 7.21578 7.70060 7.85647 8.18379 8.46012 8.89918 9.33390 10.95499 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013934 B = 0.003035 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.969759 B = 9224.866582 C =10031.186206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.102 4.102 4 C -0.170 4.170 5 C -0.102 4.102 6 C 0.580 3.420 7 O -0.522 6.522 8 N -0.613 5.613 9 C 0.102 3.898 10 C -0.132 4.132 11 C -0.124 4.124 12 C 0.124 3.876 13 H 0.083 0.917 14 C 0.113 3.887 15 N -0.728 5.728 16 C 0.533 3.467 17 O -0.531 6.531 18 C -0.148 4.148 19 S -0.063 6.063 20 C -0.532 4.532 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.869 5.869 24 Si 0.917 3.083 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.272 1.272 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.125 0.875 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.410 0.590 46 H 0.085 0.915 47 H 0.089 0.911 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.830 11.308 -17.502 30.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.121 4.121 4 C -0.173 4.173 5 C -0.159 4.159 6 C 0.369 3.631 7 O -0.397 6.397 8 N -0.349 5.349 9 C -0.021 4.021 10 C -0.170 4.170 11 C -0.162 4.162 12 C 0.020 3.980 13 H 0.101 0.899 14 C -0.013 4.013 15 N -0.389 5.389 16 C 0.319 3.681 17 O -0.407 6.407 18 C -0.298 4.298 19 S 0.163 5.837 20 C -0.680 4.680 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.505 5.505 24 Si 0.744 3.256 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.143 0.857 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.251 0.749 46 H 0.104 0.896 47 H 0.107 0.893 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 20.929 9.514 -17.755 29.048 hybrid contribution -0.229 2.208 1.595 2.733 sum 20.700 11.722 -16.160 28.758 Atomic orbital electron populations 1.21661 0.93850 1.02758 1.02024 1.20782 0.97354 0.93414 1.02703 1.23431 0.95008 0.97970 0.95667 1.21364 1.02581 0.96240 0.97082 1.20633 1.01766 0.90603 1.02855 1.18106 0.77852 0.79626 0.87474 1.90620 1.58516 1.69815 1.20775 1.48601 1.36817 1.31601 1.17832 1.22309 0.92145 1.01495 0.86156 1.22818 0.96330 0.97835 1.00005 1.22679 0.97154 0.98328 0.98067 1.21919 0.93677 0.87088 0.95278 0.89909 1.21635 0.90761 0.95778 0.93079 1.46393 1.22294 1.28104 1.42143 1.20242 0.80960 0.84066 0.82861 1.90663 1.74009 1.22968 1.53085 1.23474 1.01639 1.05217 0.99507 1.85266 1.15674 1.30045 1.52684 1.22893 1.08749 1.11027 1.25322 0.91012 1.24980 0.96487 0.95171 0.96979 1.70031 1.19876 1.18899 1.41688 0.86186 0.79510 0.79257 0.80663 1.20325 1.20810 1.19701 0.92127 0.92691 0.91759 0.90838 0.91165 0.85746 0.91369 0.90931 0.91360 0.91188 0.90467 0.89512 0.90449 0.89408 0.89761 0.91047 0.91407 0.74852 0.89633 0.89267 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.89 37.16 0.37 -1.40 16 2 C -0.11 -1.17 6.19 -27.88 -0.17 -1.35 16 3 C -0.10 -0.95 9.22 -36.13 -0.33 -1.29 16 4 C -0.17 -1.71 4.72 -102.85 -0.49 -2.20 16 5 C -0.10 -0.78 10.02 36.00 0.36 -0.42 16 6 C 0.58 7.13 4.97 -12.67 -0.06 7.06 16 7 O -0.52 -8.35 13.68 5.27 0.07 -8.28 16 8 N -0.61 -5.84 3.03 -164.40 -0.50 -6.34 16 9 C 0.10 0.62 6.63 -2.53 -0.02 0.60 16 10 C -0.13 -0.57 7.09 -24.45 -0.17 -0.75 16 11 C -0.12 -0.72 6.47 -24.76 -0.16 -0.88 16 12 C 0.12 1.16 3.02 -66.95 -0.20 0.96 16 13 H 0.08 0.81 8.11 -51.93 -0.42 0.39 16 14 C 0.11 1.48 5.05 -4.05 -0.02 1.46 16 15 N -0.73 -12.14 4.39 -60.30 -0.26 -12.41 16 16 C 0.53 11.42 7.85 -10.99 -0.09 11.33 16 17 O -0.53 -13.08 15.84 5.55 0.09 -12.99 16 18 C -0.15 -3.44 6.16 36.00 0.22 -3.21 16 19 S -0.06 -1.84 20.57 -107.50 -2.21 -4.05 16 20 C -0.53 -16.04 9.50 30.94 0.29 -15.75 16 21 H 0.07 2.08 7.80 -52.49 -0.41 1.67 16 22 C 0.07 2.16 5.49 -17.43 -0.10 2.07 16 23 N -0.87 -27.15 13.22 55.49 0.73 -26.41 16 24 Si 0.92 22.37 29.55 -169.99 -5.02 17.35 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.99 6.30 -51.93 -0.33 0.67 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16 36 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.40 7.81 -51.93 -0.41 -0.01 16 39 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 40 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.48 7.85 -51.93 -0.41 0.07 16 43 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 44 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 45 H 0.41 6.66 5.77 -40.82 -0.24 6.43 16 46 H 0.09 1.87 8.14 -51.92 -0.42 1.45 16 47 H 0.09 2.04 8.14 -51.91 -0.42 1.62 16 48 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 405.83 15.07 6.12 6.12 Total: -1.00 -37.45 405.83 -9.65 -47.09 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -8.10 Total: 3.67 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -0.57 Total: -3.75 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.03 Total: -45.16 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: 0.16 Total: -21.26 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 16 Polarization: -1.84 SS G_CDS: -2.21 Total: -4.05 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -37.45 -9.65 -47.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688841357.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.866 kcal (2) G-P(sol) polarization free energy of solvation -37.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds