Wall clock time and date at job start Sat Apr 11 2020 06:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47059 * 2 1 4 4 C 1.32993 * 120.00049 * 124.54728 * 3 2 1 5 5 C 1.50695 * 120.00222 * 185.46476 * 4 3 2 6 6 C 1.47099 * 119.99724 * 5.46505 * 4 3 2 7 7 O 1.21609 * 120.00073 * 256.63456 * 6 4 3 8 8 N 1.34775 * 119.99818 * 76.64424 * 6 4 3 9 9 C 1.47418 * 125.65062 * 6.50816 * 8 6 4 10 10 C 1.54913 * 104.83256 * 155.91200 * 9 8 6 11 11 C 1.55399 * 101.66786 * 36.92381 * 10 9 8 12 12 C 1.47027 * 125.64567 * 186.55378 * 8 6 4 13 13 H 1.09001 * 109.88504 * 300.58903 * 12 8 6 14 14 C 1.52998 * 109.88229 * 61.60178 * 12 8 6 15 15 N 1.46493 * 109.47361 * 284.63873 * 14 12 8 16 16 C 1.34773 * 120.00202 * 172.77486 * 15 14 12 17 17 O 1.21285 * 119.99785 * 0.27499 * 16 15 14 18 18 C 1.50698 * 120.00224 * 180.27770 * 16 15 14 19 19 S 1.81005 * 109.47211 * 179.97438 * 18 16 15 20 20 C 1.76199 * 99.99833 * 179.97438 * 19 18 16 21 21 H 1.07993 * 120.00544 * 0.02562 * 20 19 18 22 22 C 1.38802 * 119.99951 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99658 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00335 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46986 * 90.00476 * 24 22 20 26 26 H 1.48500 * 109.47425 * 210.00684 * 24 22 20 27 27 H 1.48501 * 109.46824 * 330.00633 * 24 22 20 28 28 H 1.08997 * 109.47435 * 299.99765 * 1 2 3 29 29 H 1.09002 * 109.47239 * 60.00289 * 1 2 3 30 30 H 1.09007 * 109.47342 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46894 * 239.99697 * 2 1 3 32 32 H 1.08996 * 109.47078 * 120.00389 * 2 1 3 33 33 H 1.08002 * 119.99953 * 304.55159 * 3 2 1 34 34 H 1.09001 * 109.47200 * 275.04915 * 5 4 3 35 35 H 1.09004 * 109.46964 * 35.04068 * 5 4 3 36 36 H 1.08993 * 109.47579 * 155.04059 * 5 4 3 37 37 H 1.09001 * 110.36578 * 274.74658 * 9 8 6 38 38 H 1.08997 * 110.37001 * 37.07469 * 9 8 6 39 39 H 1.08999 * 111.00588 * 155.08222 * 10 9 8 40 40 H 1.09005 * 111.00156 * 278.89213 * 10 9 8 41 41 H 1.09002 * 110.85124 * 206.30228 * 11 10 9 42 42 H 1.08997 * 110.69551 * 82.95555 * 11 10 9 43 43 H 1.09006 * 109.46682 * 164.64147 * 14 12 8 44 44 H 1.08995 * 109.47391 * 44.64530 * 14 12 8 45 45 H 0.97003 * 120.00042 * 353.05263 * 15 14 12 46 46 H 1.09000 * 109.47095 * 299.99777 * 18 16 15 47 47 H 1.09003 * 109.47520 * 59.99952 * 18 16 15 48 48 H 0.97000 * 119.99462 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8697 1.8300 0.9486 5 6 3.2754 3.2795 1.0216 6 6 3.4000 0.8677 1.9267 7 8 2.9514 0.8395 3.0567 8 7 4.3832 0.0174 1.5705 9 6 5.1086 0.0319 0.2873 10 6 6.4635 -0.6554 0.5900 11 6 6.0374 -1.7612 1.5952 12 6 4.9091 -1.0788 2.3972 13 1 5.3064 -0.6812 3.3311 14 6 3.7972 -2.0874 2.6925 15 7 2.8956 -1.5371 3.7075 16 6 1.7579 -2.1875 4.0222 17 8 1.4830 -3.2310 3.4685 18 6 0.8274 -1.6181 5.0619 19 16 -0.6006 -2.7130 5.2579 20 6 -1.4940 -1.8320 6.4949 21 1 -1.1025 -0.9049 6.8867 22 6 -2.7017 -2.3290 6.9652 23 7 -3.1792 -3.4587 6.4873 24 14 -3.6486 -1.3954 8.2772 25 1 -4.5799 -0.4379 7.6284 26 1 -4.4226 -2.3544 9.1058 27 1 -2.6960 -0.6519 9.1403 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8899 33 1 1.7122 2.1067 -0.7704 34 1 4.1150 3.4561 0.3492 35 1 2.4349 3.9074 0.7259 36 1 3.5698 3.5236 2.0423 37 1 4.5578 -0.5309 -0.4663 38 1 5.2695 1.0571 -0.0460 39 1 6.8909 -1.0913 -0.3131 40 1 7.1613 0.0430 1.0521 41 1 6.8664 -2.0313 2.2493 42 1 5.6600 -2.6370 1.0674 43 1 4.2363 -3.0146 3.0608 44 1 3.2370 -2.2884 1.7794 45 1 3.1155 -0.7025 4.1503 46 1 1.3535 -1.5329 6.0127 47 1 0.4879 -0.6321 4.7448 48 1 -4.0230 -3.8062 6.8162 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688841357.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:11 Heat of formation + Delta-G solvation = -85.745333 kcal Electronic energy + Delta-G solvation = -28382.018998 eV Core-core repulsion = 24562.258319 eV Total energy + Delta-G solvation = -3819.760679 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.69661 -40.34620 -38.69343 -36.88102 -35.60586 -34.62335 -33.31215 -32.39806 -31.95622 -30.05669 -27.95198 -27.72581 -26.20202 -25.16309 -23.33194 -22.65982 -21.60789 -21.34856 -19.94714 -19.26615 -18.09418 -17.92692 -17.47603 -16.99634 -16.91039 -16.49028 -16.31361 -15.96922 -15.73575 -15.17994 -14.81680 -14.74738 -14.57593 -14.43224 -14.10770 -14.05006 -13.93453 -13.80552 -13.63536 -13.43115 -13.26425 -13.20344 -12.97582 -12.92720 -12.84928 -12.67947 -12.32139 -12.10970 -12.08361 -11.98601 -11.75852 -11.63610 -11.17758 -11.04414 -10.85072 -10.35241 -10.13044 -9.90997 -9.68078 -8.71075 -8.38055 -6.16829 0.73493 1.23000 1.39421 1.42438 1.54688 1.56427 1.59059 1.98128 2.23731 2.34360 2.95231 3.28556 3.38339 3.57876 3.70400 3.77436 3.87429 4.00961 4.05970 4.11434 4.18241 4.22043 4.28926 4.42038 4.43216 4.45910 4.47184 4.51787 4.65394 4.72535 4.74541 4.81714 4.88002 4.95669 4.98505 5.02311 5.13254 5.15307 5.19444 5.27562 5.34518 5.37391 5.40930 5.51350 5.62025 6.16282 6.41634 6.50342 7.02325 7.04773 7.29934 8.71514 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013934 B = 0.003035 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.969759 B = 9224.866582 C =10031.186206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.103 4.103 3 C -0.097 4.097 4 C -0.179 4.179 5 C -0.097 4.097 6 C 0.569 3.431 7 O -0.573 6.573 8 N -0.610 5.610 9 C 0.094 3.906 10 C -0.119 4.119 11 C -0.117 4.117 12 C 0.125 3.875 13 H 0.081 0.919 14 C 0.110 3.890 15 N -0.706 5.706 16 C 0.532 3.468 17 O -0.569 6.569 18 C -0.125 4.125 19 S -0.138 6.138 20 C -0.552 4.552 21 H 0.076 0.924 22 C 0.016 3.984 23 N -0.909 5.909 24 Si 1.000 3.000 25 H -0.266 1.266 26 H -0.272 1.272 27 H -0.261 1.261 28 H 0.033 0.967 29 H 0.084 0.916 30 H 0.044 0.956 31 H 0.094 0.906 32 H 0.034 0.966 33 H 0.156 0.844 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.053 0.947 45 H 0.414 0.586 46 H 0.099 0.901 47 H 0.090 0.910 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.780 13.395 -18.692 33.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.140 4.140 3 C -0.115 4.115 4 C -0.182 4.182 5 C -0.154 4.154 6 C 0.360 3.640 7 O -0.453 6.453 8 N -0.343 5.343 9 C -0.028 4.028 10 C -0.157 4.157 11 C -0.156 4.156 12 C 0.021 3.979 13 H 0.099 0.901 14 C -0.015 4.015 15 N -0.365 5.365 16 C 0.318 3.682 17 O -0.449 6.449 18 C -0.276 4.276 19 S 0.089 5.911 20 C -0.700 4.700 21 H 0.094 0.906 22 C -0.189 4.189 23 N -0.545 5.545 24 Si 0.821 3.179 25 H -0.192 1.192 26 H -0.197 1.197 27 H -0.185 1.185 28 H 0.053 0.947 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.113 0.887 32 H 0.052 0.948 33 H 0.174 0.826 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.129 0.871 40 H 0.104 0.896 41 H 0.124 0.876 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.071 0.929 45 H 0.257 0.743 46 H 0.117 0.883 47 H 0.108 0.892 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 22.958 11.619 -18.995 31.983 hybrid contribution -0.742 1.539 1.878 2.539 sum 22.217 13.158 -17.116 30.978 Atomic orbital electron populations 1.21648 0.94882 1.01559 1.02150 1.20717 0.96408 0.94905 1.01940 1.23520 0.94496 0.97151 0.96356 1.21536 1.03087 0.97040 0.96504 1.20661 1.03151 0.88903 1.02660 1.18638 0.77953 0.80146 0.87268 1.90568 1.60361 1.71493 1.22863 1.48706 1.36036 1.30496 1.19066 1.22609 0.92750 1.02929 0.84493 1.22830 0.95302 0.97091 1.00494 1.22714 0.95999 0.98571 0.98276 1.21996 0.93131 0.86459 0.96282 0.90138 1.21915 0.90920 0.97391 0.91234 1.46311 1.20946 1.27389 1.41888 1.19950 0.81978 0.83832 0.82465 1.90640 1.75137 1.24666 1.54471 1.23296 0.99702 1.03553 1.01079 1.85348 1.19223 1.33071 1.53411 1.23188 1.09636 1.11382 1.25754 0.90608 1.26138 0.97283 0.96089 0.99416 1.70179 1.20529 1.20629 1.43183 0.84938 0.77871 0.77867 0.77192 1.19151 1.19656 1.18496 0.94733 0.89703 0.93676 0.88737 0.94760 0.82640 0.88688 0.89922 0.92837 0.90789 0.88889 0.87084 0.89625 0.87628 0.89529 0.90358 0.92885 0.74313 0.88261 0.89198 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.89 71.98 0.71 -2.88 16 2 C -0.10 -2.26 6.19 29.85 0.18 -2.07 16 3 C -0.10 -1.64 9.22 24.52 0.23 -1.42 16 4 C -0.18 -3.38 4.72 -18.71 -0.09 -3.47 16 5 C -0.10 -1.29 10.02 71.23 0.71 -0.58 16 6 C 0.57 13.93 4.97 86.57 0.43 14.36 16 7 O -0.57 -18.97 13.68 -4.06 -0.06 -19.02 16 8 N -0.61 -10.98 3.03 -792.29 -2.40 -13.38 16 9 C 0.09 0.89 6.63 86.86 0.58 1.47 16 10 C -0.12 -0.61 7.09 32.07 0.23 -0.38 16 11 C -0.12 -1.05 6.47 31.87 0.21 -0.85 16 12 C 0.13 2.22 3.02 45.34 0.14 2.36 16 13 H 0.08 1.50 8.11 -2.39 -0.02 1.48 16 14 C 0.11 2.92 5.05 86.38 0.44 3.36 16 15 N -0.71 -24.37 4.39 -463.08 -2.03 -26.41 16 16 C 0.53 23.86 7.85 87.66 0.69 24.55 16 17 O -0.57 -29.48 15.84 -3.05 -0.05 -29.52 16 18 C -0.13 -6.06 6.16 71.24 0.44 -5.62 16 19 S -0.14 -8.36 20.57 -56.49 -1.16 -9.52 16 20 C -0.55 -34.12 9.50 67.95 0.65 -33.48 16 21 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 22 C 0.02 0.94 5.49 84.86 0.47 1.41 16 23 N -0.91 -58.01 13.22 21.65 0.29 -57.72 16 24 Si 1.00 46.04 29.55 68.60 2.03 48.07 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 27 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 28 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 30 H 0.04 1.25 8.14 -2.38 -0.02 1.24 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.03 1.00 6.30 -2.39 -0.02 0.99 16 33 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 34 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 0.94 8.11 -2.38 -0.02 0.92 16 36 H 0.05 0.88 8.08 -2.39 -0.02 0.86 16 37 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.09 0.63 7.81 -2.39 -0.02 0.61 16 39 H 0.11 0.12 8.14 -2.39 -0.02 0.11 16 40 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 41 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.09 0.78 7.85 -2.39 -0.02 0.76 16 43 H 0.08 1.99 8.09 -2.38 -0.02 1.97 16 44 H 0.05 1.59 8.09 -2.39 -0.02 1.57 16 45 H 0.41 13.90 5.77 -92.71 -0.53 13.37 16 46 H 0.10 4.48 8.14 -2.39 -0.02 4.46 16 47 H 0.09 4.31 8.14 -2.39 -0.02 4.29 16 48 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -86.34 405.83 3.02 -83.32 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.41 Total: 27.45 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 6.00 Total: -3.26 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -4.15 Total: -97.51 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -0.10 Total: -48.54 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -86.34 3.02 -83.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688841357.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.429 kcal (2) G-P(sol) polarization free energy of solvation -86.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds