Wall clock time and date at job start Sat Apr 11 2020 06:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 119.99953 * 2 1 4 4 C 1.50697 * 119.99910 * 180.02562 * 2 1 3 5 5 C 1.53002 * 109.47271 * 126.30861 * 4 2 1 6 6 C 1.53009 * 109.46972 * 246.30489 * 4 2 1 7 7 C 1.50702 * 109.47412 * 6.30395 * 4 2 1 8 8 O 1.21274 * 119.99974 * 246.07920 * 7 4 2 9 9 N 1.34781 * 119.99606 * 66.08313 * 7 4 2 10 10 C 1.47064 * 136.05836 * 4.39528 * 9 7 4 11 11 C 1.53240 * 88.08378 * 207.20526 * 10 9 7 12 12 C 1.47063 * 136.05510 * 184.76764 * 9 7 4 13 13 H 1.08995 * 113.46834 * 267.67997 * 12 9 7 14 14 C 1.53006 * 113.46602 * 38.06191 * 12 9 7 15 15 N 1.46496 * 109.47248 * 296.49691 * 14 12 9 16 16 C 1.34779 * 120.00122 * 173.27946 * 15 14 12 17 17 O 1.21278 * 119.99905 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99877 * 180.02562 * 16 15 14 19 19 S 1.81001 * 109.46937 * 179.97438 * 18 16 15 20 20 C 1.76201 * 99.99938 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00297 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99908 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99989 * 179.97438 * 22 20 19 24 24 Si 1.86793 * 119.99897 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47061 * 90.00595 * 24 22 20 26 26 H 1.48506 * 109.47164 * 210.00319 * 24 22 20 27 27 H 1.48502 * 109.47417 * 330.00403 * 24 22 20 28 28 H 1.08001 * 120.00268 * 176.11553 * 1 2 3 29 29 H 1.08004 * 120.00097 * 355.83349 * 1 2 3 30 30 H 1.08999 * 109.47232 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.47449 * 120.00338 * 3 2 1 32 32 H 1.08997 * 109.47486 * 240.00011 * 3 2 1 33 33 H 1.09000 * 109.47468 * 57.07507 * 5 4 2 34 34 H 1.08998 * 109.47073 * 177.08089 * 5 4 2 35 35 H 1.09001 * 109.46916 * 297.08366 * 5 4 2 36 36 H 1.08992 * 109.46569 * 60.00152 * 6 4 2 37 37 H 1.08997 * 109.47098 * 180.02562 * 6 4 2 38 38 H 1.08999 * 109.46987 * 299.99749 * 6 4 2 39 39 H 1.09004 * 113.46840 * 321.93270 * 10 9 7 40 40 H 1.08989 * 113.46889 * 92.38045 * 10 9 7 41 41 H 1.08995 * 114.32828 * 220.47207 * 11 10 9 42 42 H 1.09000 * 114.19533 * 87.72135 * 11 10 9 43 43 H 1.09001 * 109.47479 * 56.50011 * 14 12 9 44 44 H 1.09007 * 109.46765 * 176.49775 * 14 12 9 45 45 H 0.97002 * 119.99795 * 353.27747 * 15 14 12 46 46 H 1.09008 * 109.47210 * 299.99385 * 18 16 15 47 47 H 1.08999 * 109.47669 * 59.99703 * 18 16 15 48 48 H 0.96995 * 119.99892 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 6 3.0582 -1.3192 -1.1630 6 6 2.8205 -1.4575 1.3203 7 6 1.0916 -2.4462 -0.1571 8 8 0.9322 -3.2356 0.7496 9 7 0.3997 -2.5894 -1.3048 10 6 0.3694 -1.9194 -2.6137 11 6 -1.0950 -2.3519 -2.7435 12 6 -0.6619 -3.4801 -1.7972 13 1 -0.2835 -4.3613 -2.3153 14 6 -1.7106 -3.8223 -0.7369 15 7 -1.0772 -4.5678 0.3537 16 6 -1.7788 -4.8598 1.4668 17 8 -2.9343 -4.5050 1.5658 18 6 -1.1270 -5.6261 2.5888 19 16 -2.3177 -5.8581 3.9322 20 6 -1.3197 -6.7552 5.0740 21 1 -0.2958 -6.9928 4.8258 22 6 -1.8497 -7.1576 6.2921 23 7 -1.1043 -7.8283 7.1449 24 14 -3.6209 -6.7474 6.7211 25 1 -4.5094 -7.8422 6.2550 26 1 -3.7516 -6.5965 8.1927 27 1 -4.0098 -5.4775 6.0569 28 1 -0.5400 -0.9331 -0.0634 29 1 -0.5400 0.9329 0.0680 30 1 1.3551 2.1336 0.0005 31 1 2.6902 1.3629 0.8899 32 1 2.6901 1.3629 -0.8899 33 1 3.7286 -0.4640 -1.0780 34 1 3.6393 -2.2409 -1.1328 35 1 2.5152 -1.2627 -2.1065 36 1 2.1118 -1.4474 2.1484 37 1 3.3658 -2.4012 1.3197 38 1 3.5234 -0.6322 1.4335 39 1 0.4973 -0.8387 -2.5512 40 1 1.0251 -2.3801 -3.3524 41 1 -1.3769 -2.6887 -3.7410 42 1 -1.8078 -1.6519 -2.3076 43 1 -2.1441 -2.9025 -0.3444 44 1 -2.4954 -4.4314 -1.1855 45 1 -0.1529 -4.8512 0.2746 46 1 -0.7986 -6.5986 2.2219 47 1 -0.2669 -5.0679 2.9586 48 1 -1.4747 -8.1091 7.9963 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689509061.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:18 Heat of formation + Delta-G solvation = -11.402141 kcal Electronic energy + Delta-G solvation = -28465.428774 eV Core-core repulsion = 24648.891857 eV Total energy + Delta-G solvation = -3816.536916 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.43068 -39.09576 -38.53547 -36.81650 -34.17377 -32.37025 -32.33303 -30.58476 -29.83207 -27.94571 -27.68547 -27.21605 -25.49711 -23.98571 -23.31307 -22.02037 -20.20705 -19.86989 -18.45216 -17.76509 -16.84451 -16.75133 -16.26939 -16.05431 -15.68884 -15.08951 -14.90105 -14.71894 -14.19475 -14.07958 -13.84522 -13.73278 -13.64178 -13.39347 -13.12926 -12.98229 -12.87661 -12.72434 -12.68401 -12.48021 -12.28995 -12.13225 -11.96499 -11.79561 -11.64074 -11.46371 -11.19201 -11.10222 -11.03447 -10.91926 -10.44854 -9.81657 -9.74346 -9.36460 -9.26012 -9.03562 -8.90400 -8.62470 -8.35684 -6.77723 -6.18840 -3.88426 1.88982 2.36415 2.43810 2.95494 3.25320 3.40038 3.47230 3.59135 3.76943 3.96447 4.03680 4.26814 4.42611 4.43379 4.59952 4.66252 4.67927 4.79119 4.80552 4.88915 4.94104 4.98914 5.10189 5.19594 5.20287 5.25934 5.28001 5.31047 5.35847 5.48663 5.52662 5.57266 5.58048 5.61829 5.70772 5.75357 5.80074 5.91090 6.01849 6.09809 6.28133 6.29497 6.48131 6.81195 7.41010 7.85877 8.03581 8.05478 8.53242 8.78304 9.27796 10.90692 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015267 B = 0.002947 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.585028 B = 9499.484745 C =10381.111386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.119 4.119 3 C -0.114 4.114 4 C -0.037 4.037 5 C -0.143 4.143 6 C -0.127 4.127 7 C 0.553 3.447 8 O -0.512 6.512 9 N -0.643 5.643 10 C 0.099 3.901 11 C -0.145 4.145 12 C 0.118 3.882 13 H 0.099 0.901 14 C 0.118 3.882 15 N -0.718 5.718 16 C 0.535 3.465 17 O -0.534 6.534 18 C -0.117 4.117 19 S -0.147 6.147 20 C -0.517 4.517 21 H 0.087 0.913 22 C 0.094 3.906 23 N -0.883 5.883 24 Si 0.857 3.143 25 H -0.268 1.268 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.406 0.594 46 H 0.091 0.909 47 H 0.099 0.901 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.736 18.175 -26.325 33.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.119 4.119 3 C -0.171 4.171 4 C -0.040 4.040 5 C -0.200 4.200 6 C -0.184 4.184 7 C 0.343 3.657 8 O -0.386 6.386 9 N -0.381 5.381 10 C -0.024 4.024 11 C -0.184 4.184 12 C 0.015 3.985 13 H 0.117 0.883 14 C -0.007 4.007 15 N -0.376 5.376 16 C 0.322 3.678 17 O -0.410 6.410 18 C -0.267 4.267 19 S 0.080 5.920 20 C -0.664 4.664 21 H 0.105 0.895 22 C -0.114 4.114 23 N -0.520 5.520 24 Si 0.682 3.318 25 H -0.193 1.193 26 H -0.201 1.201 27 H -0.159 1.159 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.244 0.756 46 H 0.109 0.891 47 H 0.117 0.883 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.917 18.264 -25.260 31.929 hybrid contribution 1.184 -0.563 0.226 1.330 sum 8.101 17.701 -25.033 31.712 Atomic orbital electron populations 1.24027 0.95275 1.02723 1.00503 1.21366 0.94985 0.94188 1.01401 1.20834 1.00296 0.93696 1.02283 1.19790 0.94615 0.90918 0.98669 1.21963 0.98420 1.02942 0.96677 1.21677 0.99870 1.02152 0.94722 1.20043 0.79455 0.85899 0.80314 1.90693 1.64224 1.44291 1.39355 1.49819 1.39574 1.36202 1.12498 1.22937 0.96073 0.99442 0.83929 1.23423 0.96807 0.97836 1.00308 1.23041 0.86997 0.95049 0.93418 0.88328 1.21453 0.94573 0.97341 0.87352 1.46003 1.16613 1.58112 1.16882 1.20152 0.86177 0.79045 0.82475 1.90660 1.17208 1.53159 1.80021 1.23207 1.03661 1.02366 0.97507 1.84666 1.19381 1.74145 1.13849 1.22351 1.01128 1.39685 1.03272 0.89477 1.24714 0.98210 0.93573 0.94896 1.69948 1.36608 1.36781 1.08710 0.86724 0.84776 0.81668 0.78620 1.19277 1.20051 1.15919 0.87824 0.87989 0.91748 0.91389 0.91427 0.91186 0.91941 0.91842 0.91285 0.91602 0.91834 0.89894 0.89646 0.88768 0.88191 0.91273 0.90826 0.75559 0.89054 0.88307 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.76 12.33 29.02 0.36 -1.40 16 2 C -0.12 -0.99 4.40 -101.07 -0.44 -1.43 16 3 C -0.11 -0.70 9.42 36.00 0.34 -0.36 16 4 C -0.04 -0.33 0.67 -156.81 -0.11 -0.44 16 5 C -0.14 -0.90 8.07 37.16 0.30 -0.60 16 6 C -0.13 -1.29 7.67 37.16 0.28 -1.00 16 7 C 0.55 6.33 5.08 -10.98 -0.06 6.27 16 8 O -0.51 -7.96 12.83 5.56 0.07 -7.89 16 9 N -0.64 -5.45 2.40 -177.62 -0.43 -5.87 16 10 C 0.10 0.46 5.79 -8.65 -0.05 0.41 16 11 C -0.15 -0.66 8.01 -26.35 -0.21 -0.87 16 12 C 0.12 0.92 4.13 -72.40 -0.30 0.62 16 13 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 14 C 0.12 1.42 5.63 -4.04 -0.02 1.40 16 15 N -0.72 -11.30 3.89 -60.29 -0.23 -11.54 16 16 C 0.54 11.07 7.85 -10.99 -0.09 10.98 16 17 O -0.53 -12.73 15.84 5.56 0.09 -12.64 16 18 C -0.12 -2.63 6.16 36.00 0.22 -2.41 16 19 S -0.15 -4.04 18.55 -107.50 -1.99 -6.04 16 20 C -0.52 -15.86 10.04 30.94 0.31 -15.55 16 21 H 0.09 2.80 8.03 -52.49 -0.42 2.38 16 22 C 0.09 2.89 5.50 -17.43 -0.10 2.80 16 23 N -0.88 -27.80 13.97 55.49 0.78 -27.02 16 24 Si 0.86 22.85 27.74 -169.99 -4.71 18.14 16 25 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.24 -6.29 6.74 56.52 0.38 -5.91 16 28 H 0.10 1.18 5.66 -52.49 -0.30 0.88 16 29 H 0.10 0.83 7.84 -52.48 -0.41 0.42 16 30 H 0.06 0.36 7.79 -51.93 -0.40 -0.04 16 31 H 0.07 0.42 7.54 -51.93 -0.39 0.03 16 32 H 0.07 0.32 7.21 -51.93 -0.37 -0.06 16 33 H 0.07 0.36 7.02 -51.93 -0.36 -0.01 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.33 5.42 -51.93 -0.28 0.04 16 36 H 0.07 0.87 8.03 -51.93 -0.42 0.45 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.51 7.46 -51.93 -0.39 0.12 16 39 H 0.08 0.36 6.91 -51.93 -0.36 0.00 16 40 H 0.09 0.26 8.11 -51.93 -0.42 -0.16 16 41 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.10 0.51 8.05 -51.93 -0.42 0.09 16 43 H 0.07 0.95 8.02 -51.93 -0.42 0.53 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.41 6.10 6.37 -40.82 -0.26 5.84 16 46 H 0.09 1.93 8.14 -51.91 -0.42 1.51 16 47 H 0.10 2.23 8.14 -51.92 -0.42 1.81 16 48 H 0.27 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 391.67 15.07 5.90 5.90 Total: -1.00 -37.78 391.67 -7.83 -45.61 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.74 Total: 2.93 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 0.44 Total: -1.58 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: 0.11 Total: -44.43 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: 0.16 Total: -20.53 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.71 Total: 18.14 kcal Atomic # 16 Polarization: -4.04 SS G_CDS: -1.99 Total: -6.04 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.78 -7.83 -45.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689509061.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.212 kcal (2) G-P(sol) polarization free energy of solvation -37.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds