Wall clock time and date at job start Sat Apr 11 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 119.99953 * 2 1 4 4 C 1.50697 * 119.99910 * 180.02562 * 2 1 3 5 5 C 1.53002 * 109.47271 * 126.30861 * 4 2 1 6 6 C 1.53009 * 109.46972 * 246.30489 * 4 2 1 7 7 C 1.50702 * 109.47412 * 6.30395 * 4 2 1 8 8 O 1.21274 * 119.99974 * 246.07920 * 7 4 2 9 9 N 1.34781 * 119.99606 * 66.08313 * 7 4 2 10 10 C 1.47064 * 136.05836 * 4.39528 * 9 7 4 11 11 C 1.53240 * 88.08378 * 207.20526 * 10 9 7 12 12 C 1.47063 * 136.05510 * 184.76764 * 9 7 4 13 13 H 1.08995 * 113.46834 * 267.67997 * 12 9 7 14 14 C 1.53006 * 113.46602 * 38.06191 * 12 9 7 15 15 N 1.46496 * 109.47248 * 296.49691 * 14 12 9 16 16 C 1.34779 * 120.00122 * 173.27946 * 15 14 12 17 17 O 1.21278 * 119.99905 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99877 * 180.02562 * 16 15 14 19 19 S 1.81001 * 109.46937 * 179.97438 * 18 16 15 20 20 C 1.76201 * 99.99938 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00297 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99908 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99989 * 179.97438 * 22 20 19 24 24 Si 1.86793 * 119.99897 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47061 * 90.00595 * 24 22 20 26 26 H 1.48506 * 109.47164 * 210.00319 * 24 22 20 27 27 H 1.48502 * 109.47417 * 330.00403 * 24 22 20 28 28 H 1.08001 * 120.00268 * 176.11553 * 1 2 3 29 29 H 1.08004 * 120.00097 * 355.83349 * 1 2 3 30 30 H 1.08999 * 109.47232 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.47449 * 120.00338 * 3 2 1 32 32 H 1.08997 * 109.47486 * 240.00011 * 3 2 1 33 33 H 1.09000 * 109.47468 * 57.07507 * 5 4 2 34 34 H 1.08998 * 109.47073 * 177.08089 * 5 4 2 35 35 H 1.09001 * 109.46916 * 297.08366 * 5 4 2 36 36 H 1.08992 * 109.46569 * 60.00152 * 6 4 2 37 37 H 1.08997 * 109.47098 * 180.02562 * 6 4 2 38 38 H 1.08999 * 109.46987 * 299.99749 * 6 4 2 39 39 H 1.09004 * 113.46840 * 321.93270 * 10 9 7 40 40 H 1.08989 * 113.46889 * 92.38045 * 10 9 7 41 41 H 1.08995 * 114.32828 * 220.47207 * 11 10 9 42 42 H 1.09000 * 114.19533 * 87.72135 * 11 10 9 43 43 H 1.09001 * 109.47479 * 56.50011 * 14 12 9 44 44 H 1.09007 * 109.46765 * 176.49775 * 14 12 9 45 45 H 0.97002 * 119.99795 * 353.27747 * 15 14 12 46 46 H 1.09008 * 109.47210 * 299.99385 * 18 16 15 47 47 H 1.08999 * 109.47669 * 59.99703 * 18 16 15 48 48 H 0.96995 * 119.99892 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 6 3.0582 -1.3192 -1.1630 6 6 2.8205 -1.4575 1.3203 7 6 1.0916 -2.4462 -0.1571 8 8 0.9322 -3.2356 0.7496 9 7 0.3997 -2.5894 -1.3048 10 6 0.3694 -1.9194 -2.6137 11 6 -1.0950 -2.3519 -2.7435 12 6 -0.6619 -3.4801 -1.7972 13 1 -0.2835 -4.3613 -2.3153 14 6 -1.7106 -3.8223 -0.7369 15 7 -1.0772 -4.5678 0.3537 16 6 -1.7788 -4.8598 1.4668 17 8 -2.9343 -4.5050 1.5658 18 6 -1.1270 -5.6261 2.5888 19 16 -2.3177 -5.8581 3.9322 20 6 -1.3197 -6.7552 5.0740 21 1 -0.2958 -6.9928 4.8258 22 6 -1.8497 -7.1576 6.2921 23 7 -1.1043 -7.8283 7.1449 24 14 -3.6209 -6.7474 6.7211 25 1 -4.5094 -7.8422 6.2550 26 1 -3.7516 -6.5965 8.1927 27 1 -4.0098 -5.4775 6.0569 28 1 -0.5400 -0.9331 -0.0634 29 1 -0.5400 0.9329 0.0680 30 1 1.3551 2.1336 0.0005 31 1 2.6902 1.3629 0.8899 32 1 2.6901 1.3629 -0.8899 33 1 3.7286 -0.4640 -1.0780 34 1 3.6393 -2.2409 -1.1328 35 1 2.5152 -1.2627 -2.1065 36 1 2.1118 -1.4474 2.1484 37 1 3.3658 -2.4012 1.3197 38 1 3.5234 -0.6322 1.4335 39 1 0.4973 -0.8387 -2.5512 40 1 1.0251 -2.3801 -3.3524 41 1 -1.3769 -2.6887 -3.7410 42 1 -1.8078 -1.6519 -2.3076 43 1 -2.1441 -2.9025 -0.3444 44 1 -2.4954 -4.4314 -1.1855 45 1 -0.1529 -4.8512 0.2746 46 1 -0.7986 -6.5986 2.2219 47 1 -0.2669 -5.0679 2.9586 48 1 -1.4747 -8.1091 7.9963 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689509061.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:17 Heat of formation + Delta-G solvation = -37.008292 kcal Electronic energy + Delta-G solvation = -28466.539140 eV Core-core repulsion = 24648.891857 eV Total energy + Delta-G solvation = -3817.647282 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.15232 -40.48761 -39.43224 -37.63008 -35.53942 -34.71702 -33.03333 -31.76826 -30.92026 -28.80003 -28.45528 -27.97965 -27.84194 -24.65997 -24.08763 -22.65718 -21.74467 -20.54922 -19.98479 -19.04328 -18.05307 -17.66271 -17.49480 -17.17071 -17.01008 -16.66307 -16.49804 -15.77411 -15.61097 -15.03899 -14.94899 -14.76113 -14.63545 -14.47324 -14.36565 -14.12262 -13.83989 -13.52907 -13.44572 -13.39577 -13.36449 -13.09980 -13.04056 -12.87502 -12.84496 -12.70911 -12.41050 -12.37289 -12.18673 -11.92581 -11.80121 -11.65888 -11.20712 -11.00351 -10.62419 -10.56689 -10.03172 -10.01439 -9.69061 -9.04818 -8.55448 -6.27255 0.94193 1.21176 1.28034 1.42778 1.51048 1.57376 1.60258 1.75289 2.22030 2.34519 2.68593 2.82012 3.29942 3.47826 3.60495 3.71715 3.91114 3.98240 4.00585 4.03635 4.14995 4.18688 4.20223 4.38187 4.40745 4.47522 4.64179 4.67671 4.68384 4.71822 4.78375 4.81297 4.84261 4.88481 4.96079 5.02404 5.06113 5.11023 5.21106 5.29136 5.32999 5.45761 5.61872 5.66671 5.83928 6.06143 6.46960 6.72207 6.88621 7.10638 7.25659 8.57696 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015267 B = 0.002947 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.585028 B = 9499.484745 C =10381.111386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 C -0.113 4.113 4 C -0.038 4.038 5 C -0.137 4.137 6 C -0.125 4.125 7 C 0.543 3.457 8 O -0.569 6.569 9 N -0.645 5.645 10 C 0.101 3.899 11 C -0.127 4.127 12 C 0.115 3.885 13 H 0.121 0.879 14 C 0.113 3.887 15 N -0.695 5.695 16 C 0.536 3.464 17 O -0.571 6.571 18 C -0.105 4.105 19 S -0.167 6.167 20 C -0.534 4.534 21 H 0.055 0.945 22 C 0.046 3.954 23 N -0.917 5.917 24 Si 0.919 3.081 25 H -0.258 1.258 26 H -0.254 1.254 27 H -0.240 1.240 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.033 0.967 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.115 0.885 41 H 0.128 0.872 42 H 0.092 0.908 43 H 0.049 0.951 44 H 0.083 0.917 45 H 0.411 0.589 46 H 0.104 0.896 47 H 0.094 0.906 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.954 19.953 -29.518 36.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.108 4.108 3 C -0.170 4.170 4 C -0.041 4.041 5 C -0.194 4.194 6 C -0.182 4.182 7 C 0.334 3.666 8 O -0.448 6.448 9 N -0.381 5.381 10 C -0.020 4.020 11 C -0.165 4.165 12 C 0.011 3.989 13 H 0.139 0.861 14 C -0.011 4.011 15 N -0.351 5.351 16 C 0.321 3.679 17 O -0.451 6.451 18 C -0.256 4.256 19 S 0.060 5.940 20 C -0.681 4.681 21 H 0.073 0.927 22 C -0.160 4.160 23 N -0.555 5.555 24 Si 0.740 3.260 25 H -0.182 1.182 26 H -0.178 1.178 27 H -0.164 1.164 28 H 0.098 0.902 29 H 0.130 0.870 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.146 0.854 42 H 0.110 0.890 43 H 0.068 0.932 44 H 0.101 0.899 45 H 0.251 0.749 46 H 0.122 0.878 47 H 0.112 0.888 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.171 20.063 -28.536 35.613 hybrid contribution 1.232 -1.101 1.103 1.986 sum 8.403 18.963 -27.433 34.391 Atomic orbital electron populations 1.23952 0.95768 1.02074 1.02468 1.21545 0.94729 0.94835 0.99736 1.20889 1.00469 0.92268 1.03337 1.19827 0.94782 0.90456 0.99067 1.21957 0.97950 1.03538 0.95929 1.21645 0.99514 1.02571 0.94504 1.20532 0.79688 0.85938 0.80472 1.90648 1.66337 1.46365 1.41437 1.49950 1.38549 1.36500 1.13091 1.23235 0.96628 1.00101 0.82082 1.23407 0.96652 0.95676 1.00793 1.23315 0.85974 0.97024 0.92561 0.86134 1.21751 0.96328 0.96018 0.87052 1.45907 1.16428 1.56622 1.16147 1.19794 0.85794 0.79074 0.83248 1.90637 1.18570 1.54989 1.80890 1.23167 1.02145 1.03540 0.96714 1.84488 1.20765 1.73602 1.15192 1.22455 1.00360 1.40586 1.04713 0.92651 1.25611 1.02536 0.93207 0.94608 1.70020 1.38638 1.37410 1.09405 0.85817 0.79424 0.81366 0.79427 1.18214 1.17784 1.16366 0.90227 0.87014 0.91121 0.91342 0.89167 0.89342 0.92470 0.90121 0.94759 0.92724 0.89428 0.89034 0.86755 0.85381 0.88954 0.93216 0.89887 0.74932 0.87760 0.88805 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.73 12.33 67.78 0.84 -2.90 16 2 C -0.11 -1.65 4.40 -16.49 -0.07 -1.72 16 3 C -0.11 -1.07 9.42 71.24 0.67 -0.40 16 4 C -0.04 -0.66 0.67 -53.67 -0.04 -0.70 16 5 C -0.14 -1.36 8.07 71.98 0.58 -0.78 16 6 C -0.12 -2.60 7.67 71.99 0.55 -2.05 16 7 C 0.54 12.38 5.08 87.66 0.45 12.83 16 8 O -0.57 -18.57 12.83 -3.01 -0.04 -18.61 16 9 N -0.65 -9.88 2.40 -834.27 -2.00 -11.89 16 10 C 0.10 0.57 5.79 83.09 0.48 1.05 16 11 C -0.13 -0.72 8.01 30.84 0.25 -0.47 16 12 C 0.11 1.53 4.13 41.79 0.17 1.70 16 13 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 14 C 0.11 2.66 5.63 86.38 0.49 3.15 16 15 N -0.70 -22.20 3.89 -463.05 -1.80 -24.00 16 16 C 0.54 22.74 7.85 87.66 0.69 23.42 16 17 O -0.57 -27.87 15.84 -3.02 -0.05 -27.92 16 18 C -0.10 -4.89 6.16 71.23 0.44 -4.45 16 19 S -0.17 -9.42 18.55 -56.49 -1.05 -10.46 16 20 C -0.53 -33.86 10.04 67.95 0.68 -33.18 16 21 H 0.06 3.74 8.03 -2.91 -0.02 3.72 16 22 C 0.05 2.85 5.50 84.86 0.47 3.32 16 23 N -0.92 -58.63 13.97 21.65 0.30 -58.33 16 24 Si 0.92 47.53 27.74 68.60 1.90 49.43 16 25 H -0.26 -12.85 7.11 99.48 0.71 -12.14 16 26 H -0.25 -12.14 7.11 99.48 0.71 -11.43 16 27 H -0.24 -12.51 6.74 99.48 0.67 -11.84 16 28 H 0.08 1.85 5.66 -2.91 -0.02 1.83 16 29 H 0.11 1.74 7.84 -2.91 -0.02 1.72 16 30 H 0.07 0.61 7.79 -2.39 -0.02 0.59 16 31 H 0.07 0.68 7.54 -2.39 -0.02 0.66 16 32 H 0.09 0.48 7.21 -2.39 -0.02 0.46 16 33 H 0.09 0.57 7.02 -2.39 -0.02 0.56 16 34 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.08 0.52 5.42 -2.39 -0.01 0.50 16 36 H 0.03 0.93 8.03 -2.39 -0.02 0.91 16 37 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.09 1.32 7.46 -2.39 -0.02 1.30 16 39 H 0.09 0.43 6.91 -2.38 -0.02 0.42 16 40 H 0.11 0.10 8.11 -2.39 -0.02 0.08 16 41 H 0.13 -0.03 8.14 -2.39 -0.02 -0.05 16 42 H 0.09 0.73 8.05 -2.39 -0.02 0.71 16 43 H 0.05 1.39 8.02 -2.39 -0.02 1.37 16 44 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 45 H 0.41 12.56 6.37 -92.71 -0.59 11.97 16 46 H 0.10 4.54 8.14 -2.39 -0.02 4.52 16 47 H 0.09 4.46 8.14 -2.40 -0.02 4.44 16 48 H 0.28 16.33 8.31 -92.71 -0.77 15.56 16 Total: -1.00 -86.54 391.67 4.23 -82.31 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.33 Total: 20.64 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 6.64 Total: -1.17 kcal Atomic # 7 Polarization: -90.72 SS G_CDS: -3.50 Total: -94.22 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -0.09 Total: -46.53 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 1.90 Total: 49.43 kcal Atomic # 16 Polarization: -9.42 SS G_CDS: -1.05 Total: -10.46 kcal Total: -86.54 4.23 -82.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689509061.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.299 kcal (2) G-P(sol) polarization free energy of solvation -86.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds