Wall clock time and date at job start Sat Apr 11 2020 06:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47449 * 2 1 4 4 C 1.50697 * 112.85109 * 301.89880 * 3 2 1 5 5 O 1.21282 * 120.00227 * 113.50360 * 4 3 2 6 6 N 1.34778 * 120.00174 * 293.50122 * 4 3 2 7 7 C 1.46499 * 120.00454 * 174.97769 * 6 4 3 8 8 C 1.53002 * 109.47027 * 185.01248 * 7 6 4 9 9 N 1.46498 * 115.56485 * 279.96317 * 8 7 6 10 10 C 1.34783 * 119.99634 * 318.66707 * 9 8 7 11 11 O 1.21273 * 120.00130 * 4.15927 * 10 9 8 12 12 C 1.50704 * 119.99506 * 184.16095 * 10 9 8 13 13 S 1.81005 * 109.47034 * 185.10809 * 12 10 9 14 14 C 1.76200 * 99.99827 * 180.02562 * 13 12 10 15 15 H 1.07994 * 120.00192 * 359.97438 * 14 13 12 16 16 C 1.38795 * 119.99345 * 180.02562 * 14 13 12 17 17 N 1.31631 * 120.00821 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 119.99562 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46899 * 90.00225 * 18 16 14 20 20 H 1.48502 * 109.46952 * 209.99771 * 18 16 14 21 21 H 1.48493 * 109.47123 * 329.99898 * 18 16 14 22 22 C 1.53002 * 117.49606 * 65.65746 * 8 7 6 23 23 C 1.52999 * 60.03006 * 107.47335 * 22 8 7 24 24 C 1.53781 * 113.68997 * 73.16170 * 3 2 1 25 25 C 1.53782 * 87.08017 * 89.12852 * 24 3 2 26 26 C 1.53781 * 113.61661 * 170.69965 * 3 2 1 27 27 H 1.08991 * 109.47341 * 185.15021 * 1 2 3 28 28 H 1.09005 * 109.46607 * 305.14816 * 1 2 3 29 29 H 1.08995 * 109.47260 * 65.14293 * 1 2 3 30 30 H 1.09008 * 109.46921 * 240.00108 * 2 1 3 31 31 H 1.09002 * 109.47203 * 120.00643 * 2 1 3 32 32 H 0.97002 * 119.99355 * 354.98742 * 6 4 3 33 33 H 1.09004 * 109.46555 * 65.01963 * 7 6 4 34 34 H 1.08992 * 109.47414 * 305.01794 * 7 6 4 35 35 H 0.97000 * 120.00303 * 138.66941 * 9 8 7 36 36 H 1.09000 * 109.46837 * 305.10897 * 12 10 9 37 37 H 1.09002 * 109.47412 * 65.10746 * 12 10 9 38 38 H 0.96999 * 120.00538 * 180.02562 * 17 16 14 39 39 H 1.09000 * 117.49257 * 214.97466 * 22 8 7 40 40 H 1.08993 * 117.50050 * 359.96836 * 22 8 7 41 41 H 1.09001 * 117.50108 * 107.50363 * 23 22 8 42 42 H 1.09008 * 117.49558 * 252.51581 * 23 22 8 43 43 H 1.08998 * 113.61665 * 203.67745 * 24 3 2 44 44 H 1.09001 * 113.61535 * 334.58578 * 24 3 2 45 45 H 1.09005 * 113.61295 * 270.88688 * 25 24 3 46 46 H 1.08996 * 113.69402 * 139.99420 * 25 24 3 47 47 H 1.08998 * 113.61171 * 25.35200 * 26 3 2 48 48 H 1.08995 * 113.61652 * 156.17026 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5433 2.2388 -1.1790 5 8 0.7822 3.1672 -1.0064 6 7 1.9449 1.9195 -2.4253 7 6 1.3783 2.6210 -3.5798 8 6 1.9048 1.9884 -4.8697 9 7 3.2511 2.4021 -5.2729 10 6 3.6206 3.6935 -5.1624 11 8 2.8665 4.4992 -4.6596 12 6 4.9711 4.1362 -5.6638 13 16 5.2309 5.8769 -5.2407 14 6 6.8357 6.1220 -5.9255 15 1 7.3416 5.3067 -6.4212 16 6 7.4500 7.3627 -5.8271 17 7 6.8336 8.3563 -5.2225 18 14 9.1517 7.6225 -6.5525 19 1 9.0255 8.0737 -7.9617 20 1 9.8732 8.6543 -5.7652 21 1 9.9092 6.3460 -6.5074 22 6 1.4886 0.5472 -5.1707 23 6 0.8913 1.7001 -5.9800 24 6 1.8615 2.1610 1.3478 25 6 3.2466 1.6151 1.7330 26 6 3.5564 1.5597 0.2277 27 1 -0.3633 -1.0234 0.0922 28 1 -0.3633 0.5917 0.8403 29 1 -0.3633 0.4320 -0.9324 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.6090 1.2250 -2.5578 33 1 1.6688 3.6711 -3.5453 34 1 0.2914 2.5437 -3.5545 35 1 3.8765 1.7465 -5.6194 36 1 5.7481 3.5294 -5.1988 37 1 5.0145 4.0150 -6.7462 38 1 7.2628 9.2235 -5.1541 39 1 2.2166 -0.0932 -5.6687 40 1 0.8402 0.0496 -4.4496 41 1 1.2263 1.8181 -7.0106 42 1 -0.1500 1.9611 -5.7912 43 1 1.8284 3.2471 1.2627 44 1 1.0496 1.7579 1.9533 45 1 3.2128 0.6346 2.2082 46 1 3.8624 2.3293 2.2795 47 1 4.1128 0.6713 -0.0712 48 1 3.9870 2.4808 -0.1650 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689606893.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:24 Heat of formation + Delta-G solvation = -34.369664 kcal Electronic energy + Delta-G solvation = -27735.848081 eV Core-core repulsion = 23918.315219 eV Total energy + Delta-G solvation = -3817.532863 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.85712 -39.87680 -37.91296 -37.20688 -34.15751 -32.82358 -32.64564 -32.44542 -29.16882 -27.93156 -25.83344 -25.66223 -25.46952 -23.12665 -22.80206 -21.52941 -20.94959 -19.88968 -18.65035 -17.92390 -17.24789 -16.64511 -16.44528 -15.71864 -15.70401 -15.22928 -14.90939 -14.82059 -14.75833 -14.29215 -14.07496 -14.00608 -13.61657 -13.31685 -12.90145 -12.77120 -12.58432 -12.53447 -12.40724 -12.06627 -11.94934 -11.81911 -11.72527 -11.48243 -11.18412 -11.15452 -11.07908 -11.04374 -10.81883 -10.70284 -10.56640 -10.42741 -9.84292 -9.57075 -9.51752 -9.08667 -8.83960 -8.63962 -8.26035 -6.52197 -6.23307 -3.94329 2.71563 2.83952 2.91903 3.09205 3.20886 3.24722 3.28927 3.57254 3.71104 4.15934 4.18229 4.27386 4.36168 4.48655 4.58466 4.60127 4.68684 4.83754 4.97119 5.01219 5.10596 5.11799 5.18394 5.30695 5.37227 5.43803 5.51901 5.58090 5.62048 5.62435 5.63613 5.66979 5.68998 5.75817 5.82234 5.82660 5.84578 6.00097 6.02221 6.07121 6.22781 6.26102 6.48101 6.63121 7.54381 7.57341 7.61987 8.30814 8.33054 8.54150 9.21837 10.83978 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012290 B = 0.002813 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.817407 B = 9953.064297 C =11412.629452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.092 4.092 3 C -0.107 4.107 4 C 0.529 3.471 5 O -0.536 6.536 6 N -0.721 5.721 7 C 0.127 3.873 8 C 0.097 3.903 9 N -0.708 5.708 10 C 0.537 3.463 11 O -0.503 6.503 12 C -0.153 4.153 13 S -0.056 6.056 14 C -0.537 4.537 15 H 0.072 0.928 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.918 3.082 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 C -0.174 4.174 23 C -0.173 4.173 24 C -0.111 4.111 25 C -0.141 4.141 26 C -0.128 4.128 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.396 0.604 33 H 0.124 0.876 34 H 0.070 0.930 35 H 0.401 0.599 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.269 0.731 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.713 -22.852 7.114 25.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.129 4.129 3 C -0.110 4.110 4 C 0.315 3.685 5 O -0.412 6.412 6 N -0.372 5.372 7 C 0.004 3.996 8 C 0.008 3.992 9 N -0.362 5.362 10 C 0.323 3.677 11 O -0.376 6.376 12 C -0.304 4.304 13 S 0.170 5.830 14 C -0.685 4.685 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.502 5.502 18 Si 0.745 3.255 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.197 1.197 22 C -0.212 4.212 23 C -0.212 4.212 24 C -0.149 4.149 25 C -0.178 4.178 26 C -0.165 4.165 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.229 0.771 33 H 0.141 0.859 34 H 0.089 0.911 35 H 0.236 0.764 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.110 0.890 44 H 0.090 0.910 45 H 0.100 0.900 46 H 0.091 0.909 47 H 0.092 0.908 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.493 -20.626 8.195 24.994 hybrid contribution 2.597 -1.458 -1.646 3.403 sum -8.896 -22.084 6.549 24.693 Atomic orbital electron populations 1.21765 0.95185 1.01574 1.02543 1.21259 0.96399 0.92625 1.02664 1.22213 0.97817 0.96499 0.94472 1.20300 0.80627 0.84002 0.83568 1.90707 1.35952 1.29315 1.85270 1.45890 1.44733 1.40801 1.05770 1.21575 0.97173 1.00384 0.80482 1.20797 0.84995 0.97626 0.95741 1.45374 1.13174 1.09686 1.67919 1.20366 0.88503 0.81056 0.77733 1.90578 1.53310 1.52143 1.41610 1.23543 0.95482 1.07241 1.04133 1.85461 1.22628 0.99343 1.75530 1.22854 1.02697 0.99881 1.43069 0.90958 1.24993 0.98606 0.94927 0.95038 1.70014 1.37836 1.02202 1.40118 0.86173 0.82225 0.78137 0.78990 1.20258 1.20733 1.19712 1.23325 1.03750 0.90447 1.03644 1.23470 0.99076 1.01406 0.97259 1.22832 0.97252 1.01182 0.93652 1.22828 0.97428 1.01522 0.96064 1.22980 0.93399 1.03089 0.97063 0.92474 0.92164 0.92754 0.91422 0.90739 0.77057 0.85888 0.91131 0.76423 0.89419 0.89038 0.92137 0.88137 0.87751 0.87968 0.87889 0.88991 0.90988 0.90032 0.90924 0.90751 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.54 37.16 0.35 -0.87 16 2 C -0.09 -0.68 5.30 -26.73 -0.14 -0.82 16 3 C -0.11 -1.06 0.80 -154.85 -0.12 -1.18 16 4 C 0.53 7.17 5.72 -10.99 -0.06 7.10 16 5 O -0.54 -9.66 16.18 5.56 0.09 -9.57 16 6 N -0.72 -8.57 5.52 -60.30 -0.33 -8.90 16 7 C 0.13 1.75 5.43 -4.04 -0.02 1.72 16 8 C 0.10 1.07 2.28 -131.78 -0.30 0.77 16 9 N -0.71 -8.64 5.57 -47.57 -0.26 -8.91 16 10 C 0.54 9.48 7.70 -10.98 -0.08 9.40 16 11 O -0.50 -10.92 13.00 5.56 0.07 -10.85 16 12 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 13 S -0.06 -1.50 20.58 -107.50 -2.21 -3.72 16 14 C -0.54 -15.13 9.50 30.94 0.29 -14.84 16 15 H 0.07 1.92 7.80 -52.49 -0.41 1.52 16 16 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 17 N -0.87 -26.10 13.22 55.49 0.73 -25.36 16 18 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 C -0.17 -1.29 10.11 -26.73 -0.27 -1.56 16 23 C -0.17 -1.62 10.11 -26.70 -0.27 -1.89 16 24 C -0.11 -1.14 6.72 -25.92 -0.17 -1.31 16 25 C -0.14 -1.17 7.73 -25.92 -0.20 -1.37 16 26 C -0.13 -1.17 7.22 -25.92 -0.19 -1.36 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.52 7.15 -51.93 -0.37 0.15 16 29 H 0.05 0.52 7.55 -51.93 -0.39 0.12 16 30 H 0.07 0.43 8.14 -51.92 -0.42 0.00 16 31 H 0.07 0.46 7.31 -51.93 -0.38 0.08 16 32 H 0.40 3.76 8.48 -40.82 -0.35 3.41 16 33 H 0.12 2.29 4.98 -51.93 -0.26 2.04 16 34 H 0.07 0.95 7.95 -51.93 -0.41 0.54 16 35 H 0.40 3.66 8.78 -40.82 -0.36 3.30 16 36 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 37 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 38 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.10 0.92 8.09 -51.92 -0.42 0.50 16 43 H 0.09 1.15 7.73 -51.93 -0.40 0.75 16 44 H 0.07 0.66 7.24 -51.93 -0.38 0.28 16 45 H 0.08 0.54 7.60 -51.93 -0.39 0.14 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 48 H 0.09 1.00 8.09 -51.93 -0.42 0.58 16 LS Contribution 405.05 15.07 6.10 6.10 Total: -1.00 -35.60 405.05 -9.77 -45.37 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -7.88 Total: 6.53 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -1.06 Total: -6.95 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.14 Total: -43.18 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: 0.16 Total: -20.42 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.60 -9.77 -45.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689606893.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.002 kcal (2) G-P(sol) polarization free energy of solvation -35.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds