Wall clock time and date at job start Sat Apr 11 2020 06:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47449 * 2 1 4 4 C 1.50697 * 112.85109 * 301.89880 * 3 2 1 5 5 O 1.21282 * 120.00227 * 113.50360 * 4 3 2 6 6 N 1.34778 * 120.00174 * 293.50122 * 4 3 2 7 7 C 1.46499 * 120.00454 * 174.97769 * 6 4 3 8 8 C 1.53002 * 109.47027 * 185.01248 * 7 6 4 9 9 N 1.46498 * 115.56485 * 279.96317 * 8 7 6 10 10 C 1.34783 * 119.99634 * 318.66707 * 9 8 7 11 11 O 1.21273 * 120.00130 * 4.15927 * 10 9 8 12 12 C 1.50704 * 119.99506 * 184.16095 * 10 9 8 13 13 S 1.81005 * 109.47034 * 185.10809 * 12 10 9 14 14 C 1.76200 * 99.99827 * 180.02562 * 13 12 10 15 15 H 1.07994 * 120.00192 * 359.97438 * 14 13 12 16 16 C 1.38795 * 119.99345 * 180.02562 * 14 13 12 17 17 N 1.31631 * 120.00821 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 119.99562 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46899 * 90.00225 * 18 16 14 20 20 H 1.48502 * 109.46952 * 209.99771 * 18 16 14 21 21 H 1.48493 * 109.47123 * 329.99898 * 18 16 14 22 22 C 1.53002 * 117.49606 * 65.65746 * 8 7 6 23 23 C 1.52999 * 60.03006 * 107.47335 * 22 8 7 24 24 C 1.53781 * 113.68997 * 73.16170 * 3 2 1 25 25 C 1.53782 * 87.08017 * 89.12852 * 24 3 2 26 26 C 1.53781 * 113.61661 * 170.69965 * 3 2 1 27 27 H 1.08991 * 109.47341 * 185.15021 * 1 2 3 28 28 H 1.09005 * 109.46607 * 305.14816 * 1 2 3 29 29 H 1.08995 * 109.47260 * 65.14293 * 1 2 3 30 30 H 1.09008 * 109.46921 * 240.00108 * 2 1 3 31 31 H 1.09002 * 109.47203 * 120.00643 * 2 1 3 32 32 H 0.97002 * 119.99355 * 354.98742 * 6 4 3 33 33 H 1.09004 * 109.46555 * 65.01963 * 7 6 4 34 34 H 1.08992 * 109.47414 * 305.01794 * 7 6 4 35 35 H 0.97000 * 120.00303 * 138.66941 * 9 8 7 36 36 H 1.09000 * 109.46837 * 305.10897 * 12 10 9 37 37 H 1.09002 * 109.47412 * 65.10746 * 12 10 9 38 38 H 0.96999 * 120.00538 * 180.02562 * 17 16 14 39 39 H 1.09000 * 117.49257 * 214.97466 * 22 8 7 40 40 H 1.08993 * 117.50050 * 359.96836 * 22 8 7 41 41 H 1.09001 * 117.50108 * 107.50363 * 23 22 8 42 42 H 1.09008 * 117.49558 * 252.51581 * 23 22 8 43 43 H 1.08998 * 113.61665 * 203.67745 * 24 3 2 44 44 H 1.09001 * 113.61535 * 334.58578 * 24 3 2 45 45 H 1.09005 * 113.61295 * 270.88688 * 25 24 3 46 46 H 1.08996 * 113.69402 * 139.99420 * 25 24 3 47 47 H 1.08998 * 113.61171 * 25.35200 * 26 3 2 48 48 H 1.08995 * 113.61652 * 156.17026 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5433 2.2388 -1.1790 5 8 0.7822 3.1672 -1.0064 6 7 1.9449 1.9195 -2.4253 7 6 1.3783 2.6210 -3.5798 8 6 1.9048 1.9884 -4.8697 9 7 3.2511 2.4021 -5.2729 10 6 3.6206 3.6935 -5.1624 11 8 2.8665 4.4992 -4.6596 12 6 4.9711 4.1362 -5.6638 13 16 5.2309 5.8769 -5.2407 14 6 6.8357 6.1220 -5.9255 15 1 7.3416 5.3067 -6.4212 16 6 7.4500 7.3627 -5.8271 17 7 6.8336 8.3563 -5.2225 18 14 9.1517 7.6225 -6.5525 19 1 9.0255 8.0737 -7.9617 20 1 9.8732 8.6543 -5.7652 21 1 9.9092 6.3460 -6.5074 22 6 1.4886 0.5472 -5.1707 23 6 0.8913 1.7001 -5.9800 24 6 1.8615 2.1610 1.3478 25 6 3.2466 1.6151 1.7330 26 6 3.5564 1.5597 0.2277 27 1 -0.3633 -1.0234 0.0922 28 1 -0.3633 0.5917 0.8403 29 1 -0.3633 0.4320 -0.9324 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.6090 1.2250 -2.5578 33 1 1.6688 3.6711 -3.5453 34 1 0.2914 2.5437 -3.5545 35 1 3.8765 1.7465 -5.6194 36 1 5.7481 3.5294 -5.1988 37 1 5.0145 4.0150 -6.7462 38 1 7.2628 9.2235 -5.1541 39 1 2.2166 -0.0932 -5.6687 40 1 0.8402 0.0496 -4.4496 41 1 1.2263 1.8181 -7.0106 42 1 -0.1500 1.9611 -5.7912 43 1 1.8284 3.2471 1.2627 44 1 1.0496 1.7579 1.9533 45 1 3.2128 0.6346 2.2082 46 1 3.8624 2.3293 2.2795 47 1 4.1128 0.6713 -0.0712 48 1 3.9870 2.4808 -0.1650 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689606893.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:23 Heat of formation + Delta-G solvation = -60.157640 kcal Electronic energy + Delta-G solvation = -27736.966332 eV Core-core repulsion = 23918.315219 eV Total energy + Delta-G solvation = -3818.651113 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.81220 -41.01661 -38.98396 -38.27971 -35.27493 -34.59884 -34.01266 -33.29039 -30.61481 -28.94594 -27.68094 -26.63881 -26.44126 -23.81862 -23.53857 -22.67616 -21.91073 -21.03921 -19.87111 -19.56802 -18.15961 -18.00557 -17.48233 -16.89156 -16.80688 -16.56961 -16.46922 -16.12799 -15.89600 -15.49446 -14.98790 -14.91933 -14.86568 -14.53014 -14.43256 -13.87595 -13.66444 -13.52446 -13.39199 -13.32107 -13.16967 -12.90409 -12.66679 -12.61492 -12.45580 -12.40927 -12.21062 -12.07612 -11.90408 -11.76199 -11.65681 -11.29686 -11.15553 -11.15340 -10.82533 -10.61996 -10.27578 -9.89076 -9.84771 -8.67877 -8.35558 -6.13904 1.24415 1.41511 1.44941 1.54389 1.57178 1.65988 2.09340 2.15342 2.26653 2.87774 2.98662 3.29176 3.38401 3.50095 3.51767 3.71441 3.77222 3.85503 3.88476 3.97046 4.05076 4.29227 4.36411 4.44504 4.46472 4.49573 4.54947 4.62622 4.72815 4.77799 4.80197 4.87988 4.95875 4.96768 5.03404 5.04401 5.09740 5.15815 5.18696 5.28639 5.38433 5.40432 5.43233 5.51383 5.53764 6.18510 6.51662 6.57402 7.05591 7.25538 7.29334 8.73546 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012290 B = 0.002813 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.817407 B = 9953.064297 C =11412.629452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.086 4.086 3 C -0.101 4.101 4 C 0.520 3.480 5 O -0.593 6.593 6 N -0.706 5.706 7 C 0.132 3.868 8 C 0.067 3.933 9 N -0.678 5.678 10 C 0.536 3.464 11 O -0.552 6.552 12 C -0.128 4.128 13 S -0.155 6.155 14 C -0.544 4.544 15 H 0.084 0.916 16 C 0.012 3.988 17 N -0.913 5.913 18 Si 0.999 3.001 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.256 1.256 22 C -0.127 4.127 23 C -0.177 4.177 24 C -0.124 4.124 25 C -0.127 4.127 26 C -0.127 4.127 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.032 0.968 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.411 0.589 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.421 0.579 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.271 0.729 39 H 0.131 0.869 40 H 0.120 0.880 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.054 0.946 44 H 0.082 0.918 45 H 0.112 0.888 46 H 0.069 0.931 47 H 0.104 0.896 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.089 -27.729 6.276 29.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.123 4.123 3 C -0.104 4.104 4 C 0.308 3.692 5 O -0.474 6.474 6 N -0.357 5.357 7 C 0.008 3.992 8 C -0.021 4.021 9 N -0.332 5.332 10 C 0.322 3.678 11 O -0.429 6.429 12 C -0.279 4.279 13 S 0.073 5.927 14 C -0.692 4.692 15 H 0.102 0.898 16 C -0.193 4.193 17 N -0.549 5.549 18 Si 0.821 3.179 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.179 1.179 22 C -0.165 4.165 23 C -0.216 4.216 24 C -0.162 4.162 25 C -0.164 4.164 26 C -0.164 4.164 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.106 0.894 31 H 0.118 0.882 32 H 0.247 0.753 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.260 0.740 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.079 0.921 39 H 0.149 0.851 40 H 0.138 0.862 41 H 0.125 0.875 42 H 0.120 0.880 43 H 0.073 0.927 44 H 0.101 0.899 45 H 0.131 0.869 46 H 0.087 0.913 47 H 0.122 0.878 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.844 -25.602 7.326 28.391 hybrid contribution 1.958 -0.003 -1.383 2.397 sum -7.886 -25.605 5.944 27.444 Atomic orbital electron populations 1.21767 0.95906 1.02492 1.00892 1.21326 0.95665 0.90437 1.04862 1.22336 0.98296 0.97671 0.92082 1.21131 0.79673 0.83510 0.84867 1.90677 1.38664 1.31899 1.86118 1.45788 1.44466 1.40456 1.04998 1.21231 0.97112 0.98168 0.82721 1.20773 0.84636 1.01304 0.95352 1.44980 1.14168 1.07867 1.66192 1.20112 0.87497 0.82577 0.77578 1.90616 1.54389 1.54032 1.43881 1.23367 0.97481 1.01607 1.05424 1.85698 1.23572 1.06870 1.76606 1.23194 1.02634 1.00525 1.42845 0.89780 1.26154 1.03376 0.94494 0.95278 1.70194 1.40053 1.02836 1.41844 0.84946 0.76280 0.78608 0.78097 1.19341 1.20442 1.17946 1.23489 1.02692 0.88269 1.02002 1.23570 0.98558 1.02549 0.96942 1.22844 0.99343 0.99242 0.94753 1.22836 0.95293 1.02782 0.95481 1.22958 0.92790 1.02908 0.97792 0.90201 0.93412 0.94887 0.89416 0.88212 0.75291 0.91150 0.91527 0.74031 0.87162 0.87158 0.92055 0.85109 0.86228 0.87472 0.87964 0.92697 0.89941 0.86920 0.91270 0.87767 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.54 71.98 0.69 -1.50 16 2 C -0.09 -0.99 5.30 30.59 0.16 -0.83 16 3 C -0.10 -1.93 0.80 -52.40 -0.04 -1.97 16 4 C 0.52 14.73 5.72 87.66 0.50 15.24 16 5 O -0.59 -23.37 16.18 -3.03 -0.05 -23.42 16 6 N -0.71 -16.82 5.52 -463.06 -2.55 -19.37 16 7 C 0.13 3.76 5.43 86.38 0.47 4.23 16 8 C 0.07 1.38 2.28 3.63 0.01 1.39 16 9 N -0.68 -15.33 5.57 -422.81 -2.35 -17.68 16 10 C 0.54 19.08 7.70 87.66 0.67 19.76 16 11 O -0.55 -25.44 13.00 -3.01 -0.04 -25.48 16 12 C -0.13 -4.91 6.16 71.24 0.44 -4.47 16 13 S -0.15 -8.61 20.58 -56.49 -1.16 -9.78 16 14 C -0.54 -30.99 9.50 67.95 0.65 -30.35 16 15 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 16 C 0.01 0.66 5.49 84.86 0.47 1.13 16 17 N -0.91 -56.75 13.22 21.65 0.29 -56.46 16 18 Si 1.00 43.61 29.55 68.60 2.03 45.63 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 22 C -0.13 -1.33 10.11 30.59 0.31 -1.02 16 23 C -0.18 -2.91 10.11 30.62 0.31 -2.60 16 24 C -0.12 -2.59 6.72 31.12 0.21 -2.38 16 25 C -0.13 -1.89 7.73 31.12 0.24 -1.65 16 26 C -0.13 -2.17 7.22 31.12 0.22 -1.95 16 27 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 0.79 7.15 -2.38 -0.02 0.77 16 29 H 0.03 0.60 7.55 -2.39 -0.02 0.58 16 30 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.10 0.74 7.31 -2.39 -0.02 0.72 16 32 H 0.41 7.02 8.48 -92.71 -0.79 6.23 16 33 H 0.07 2.87 4.98 -2.38 -0.01 2.86 16 34 H 0.07 1.90 7.95 -2.39 -0.02 1.89 16 35 H 0.42 6.13 8.78 -92.71 -0.81 5.32 16 36 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 37 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 38 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 39 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.11 1.69 8.14 -2.39 -0.02 1.68 16 42 H 0.10 1.70 8.09 -2.38 -0.02 1.68 16 43 H 0.05 1.54 7.73 -2.39 -0.02 1.52 16 44 H 0.08 1.50 7.24 -2.39 -0.02 1.48 16 45 H 0.11 1.04 7.60 -2.38 -0.02 1.02 16 46 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.10 1.17 8.10 -2.39 -0.02 1.15 16 48 H 0.06 1.36 8.09 -2.39 -0.02 1.34 16 Total: -1.00 -86.61 405.05 0.83 -85.78 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: -0.62 Total: 27.75 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 5.30 Total: -6.97 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -4.62 Total: -93.51 kcal Atomic # 8 Polarization: -48.81 SS G_CDS: -0.09 Total: -48.90 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.78 kcal Total: -86.61 0.83 -85.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689606893.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.622 kcal (2) G-P(sol) polarization free energy of solvation -86.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds