Wall clock time and date at job start Sat Apr 11 2020 06:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50693 * 109.47018 * 2 1 4 4 C 1.37475 * 123.35289 * 265.02361 * 3 2 1 5 5 C 1.33816 * 115.10125 * 179.97438 * 4 3 2 6 6 S 1.70615 * 110.95474 * 0.02562 * 5 4 3 7 7 C 1.36651 * 123.35111 * 84.72782 * 3 2 1 8 8 C 1.46585 * 125.45883 * 0.02562 * 7 3 2 9 9 O 1.21704 * 119.99897 * 351.53008 * 8 7 3 10 10 N 1.34773 * 119.99947 * 171.52790 * 8 7 3 11 11 C 1.46499 * 120.00372 * 0.20721 * 10 8 7 12 12 C 1.46506 * 119.99989 * 180.20372 * 10 8 7 13 13 C 1.52997 * 109.46894 * 90.00130 * 12 10 8 14 14 O 1.42896 * 109.47203 * 65.00178 * 13 12 10 15 15 C 1.42897 * 114.00134 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47521 * 179.97438 * 15 14 13 17 17 N 1.46503 * 109.46817 * 64.99636 * 16 15 14 18 18 C 1.46499 * 120.00028 * 270.00291 * 17 16 15 19 19 C 1.36941 * 119.99865 * 90.00508 * 17 16 15 20 20 H 1.07999 * 120.00312 * 22.49918 * 19 17 16 21 21 C 1.38816 * 119.99688 * 202.50130 * 19 17 16 22 22 N 1.31618 * 119.99981 * 10.35169 * 21 19 17 23 23 Si 1.86803 * 119.99700 * 190.35815 * 21 19 17 24 24 H 1.48496 * 109.47257 * 94.96803 * 23 21 19 25 25 H 1.48497 * 109.46830 * 214.97119 * 23 21 19 26 26 H 1.48495 * 109.47118 * 334.96924 * 23 21 19 27 27 H 1.08995 * 109.47083 * 299.99767 * 1 2 3 28 28 H 1.09001 * 109.46985 * 60.00567 * 1 2 3 29 29 H 1.09005 * 109.47035 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47127 * 120.00193 * 2 1 3 31 31 H 1.08997 * 109.46927 * 239.99712 * 2 1 3 32 32 H 1.07999 * 122.44517 * 359.93981 * 4 3 2 33 33 H 1.07997 * 124.52220 * 179.97438 * 5 4 3 34 34 H 1.09006 * 109.47344 * 82.89027 * 11 10 8 35 35 H 1.08998 * 109.47421 * 202.89937 * 11 10 8 36 36 H 1.08999 * 109.46674 * 322.89740 * 11 10 8 37 37 H 1.08996 * 109.47106 * 210.00375 * 12 10 8 38 38 H 1.09001 * 109.46663 * 329.99916 * 12 10 8 39 39 H 1.08994 * 109.46971 * 185.00481 * 13 12 10 40 40 H 1.09007 * 109.46932 * 305.00000 * 13 12 10 41 41 H 1.09001 * 109.46967 * 299.99867 * 15 14 13 42 42 H 1.09000 * 109.47338 * 59.99639 * 15 14 13 43 43 H 1.08998 * 109.47646 * 184.99884 * 16 15 14 44 44 H 1.09001 * 109.46830 * 305.00203 * 16 15 14 45 45 H 1.08991 * 109.47568 * 90.39521 * 18 17 16 46 46 H 1.09003 * 109.46975 * 210.39654 * 18 17 16 47 47 H 1.08997 * 109.46917 * 330.39058 * 18 17 16 48 48 H 0.96998 * 119.99491 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3782 2.1002 -1.1440 5 6 2.8034 3.3545 -0.9527 6 16 2.7925 3.7563 0.7054 7 6 2.1839 2.1640 1.1366 8 6 1.8894 1.7062 2.4976 9 8 1.3302 0.6395 2.6732 10 7 2.2378 2.4664 3.5545 11 6 2.9068 3.7524 3.3431 12 6 1.9474 2.0067 4.9150 13 6 3.1287 1.1880 5.4396 14 8 4.2757 2.0314 5.5623 15 6 5.4409 1.3610 6.0468 16 6 6.6007 2.3547 6.1369 17 7 6.2933 3.3740 7.1433 18 6 5.5942 4.6010 6.7535 19 6 6.6594 3.1798 8.4485 20 1 7.4609 2.4968 8.6887 21 6 6.0004 3.8607 9.4629 22 7 4.8994 4.5315 9.1979 23 14 6.6763 3.8252 11.2040 24 1 7.5223 5.0242 11.4311 25 1 5.5503 3.8232 12.1721 26 1 7.4936 2.5998 11.3928 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 2.3121 1.6539 -2.1253 33 1 3.1130 4.0229 -1.7424 34 1 2.1617 4.5187 3.1288 35 1 3.4611 4.0256 4.2410 36 1 3.5952 3.6698 2.5021 37 1 1.7861 2.8682 5.5629 38 1 1.0511 1.3865 4.9053 39 1 2.8776 0.7719 6.4152 40 1 3.3464 0.3774 4.7440 41 1 5.2381 0.9482 7.0350 42 1 5.7065 0.5542 5.3636 43 1 7.5108 1.8264 6.4211 44 1 6.7456 2.8328 5.1681 45 1 4.5187 4.4524 6.8488 46 1 5.9069 5.4191 7.4023 47 1 5.8371 4.8445 5.7192 48 1 4.4391 5.0076 9.9066 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692310341.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:40 Heat of formation + Delta-G solvation = -19.068335 kcal Electronic energy + Delta-G solvation = -28186.598601 eV Core-core repulsion = 24369.729254 eV Total energy + Delta-G solvation = -3816.869347 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.11005 -38.31295 -37.34864 -35.63397 -34.96149 -32.83549 -31.64159 -30.68265 -28.94088 -27.95146 -26.65820 -25.73162 -25.28161 -23.09967 -22.86449 -22.43756 -20.52174 -20.26919 -18.43605 -18.03846 -16.80056 -16.32024 -16.15859 -15.69765 -15.52147 -15.43110 -14.96593 -14.45956 -14.19840 -14.13001 -13.68020 -13.52798 -13.32089 -13.19684 -13.04441 -12.98500 -12.74118 -12.38759 -12.25019 -12.05511 -11.95089 -11.50116 -11.44028 -11.31003 -10.97933 -10.91588 -10.83331 -10.75784 -10.55305 -10.45652 -10.07003 -9.90326 -9.86736 -9.78206 -8.97882 -8.91383 -8.74160 -8.47343 -8.36242 -6.67285 -5.67389 -3.11589 0.42493 1.40446 1.83636 2.26577 2.95433 3.17355 3.39489 3.46077 3.47185 4.28676 4.50933 4.54347 4.67614 4.98634 5.03753 5.10534 5.25566 5.27620 5.37107 5.39056 5.45936 5.49500 5.58664 5.60095 5.64851 5.73288 5.78020 5.89526 5.91727 5.92510 5.97626 6.14152 6.16668 6.21989 6.27707 6.28488 6.36532 6.52459 6.58967 6.79753 6.93786 7.34236 7.52566 7.80972 7.88422 7.94006 8.12338 8.46284 9.30883 9.94164 10.44438 11.37838 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020808 B = 0.002621 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.342573 B =10680.206365 C =11185.247703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 C -0.021 4.021 4 C -0.149 4.149 5 C -0.262 4.262 6 S 0.230 5.770 7 C -0.271 4.271 8 C 0.586 3.414 9 O -0.531 6.531 10 N -0.599 5.599 11 C 0.066 3.934 12 C 0.124 3.876 13 C 0.048 3.952 14 O -0.367 6.367 15 C 0.045 3.955 16 C 0.153 3.847 17 N -0.596 5.596 18 C 0.175 3.825 19 C -0.254 4.254 20 H 0.066 0.934 21 C 0.001 3.999 22 N -0.905 5.905 23 Si 0.902 3.098 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.281 1.281 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.137 0.863 33 H 0.162 0.838 34 H 0.062 0.938 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.054 0.946 40 H 0.041 0.959 41 H 0.047 0.953 42 H 0.022 0.978 43 H 0.057 0.943 44 H 0.042 0.958 45 H 0.026 0.974 46 H 0.045 0.955 47 H -0.010 1.010 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.155 -3.220 -20.454 21.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.107 4.107 3 C -0.037 4.037 4 C -0.180 4.180 5 C -0.399 4.399 6 S 0.500 5.500 7 C -0.391 4.391 8 C 0.375 3.625 9 O -0.411 6.411 10 N -0.330 5.330 11 C -0.079 4.079 12 C 0.002 3.998 13 C -0.030 4.030 14 O -0.286 6.286 15 C -0.035 4.035 16 C 0.025 3.975 17 N -0.319 5.319 18 C 0.031 3.969 19 C -0.383 4.383 20 H 0.084 0.916 21 C -0.197 4.197 22 N -0.550 5.550 23 Si 0.733 3.267 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.206 1.206 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.155 0.845 33 H 0.180 0.820 34 H 0.080 0.920 35 H 0.128 0.872 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.040 0.960 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.044 0.956 46 H 0.064 0.936 47 H 0.008 0.992 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.144 -2.094 -19.489 20.863 hybrid contribution 0.035 -1.453 0.061 1.454 sum -7.109 -3.547 -19.428 20.990 Atomic orbital electron populations 1.21602 0.94299 1.01623 1.01819 1.20339 0.96547 0.90674 1.03123 1.19461 0.96283 0.97309 0.90598 1.19837 1.04442 0.94391 0.99332 1.25882 1.07208 1.01562 1.05204 1.83791 1.59006 1.11793 0.95380 1.24420 1.17311 0.99909 0.97485 1.16995 0.78735 0.83972 0.82796 1.90775 1.43040 1.21862 1.85403 1.47580 1.58656 1.20628 1.06165 1.22071 0.97498 0.84345 1.03944 1.21598 0.97035 1.00242 0.80975 1.22762 0.87678 0.93415 0.99186 1.87913 1.18554 1.35747 1.86418 1.23448 0.87599 0.95857 0.96565 1.20880 0.93342 0.90416 0.92820 1.43880 1.67828 1.15827 1.04360 1.20692 0.95944 0.87850 0.92449 1.19237 1.12026 1.24570 0.82517 0.91591 1.25009 0.95963 1.01002 0.97691 1.70086 1.17077 1.36457 1.31373 0.86268 0.77850 0.77733 0.84863 1.21622 1.21839 1.20597 0.91861 0.93442 0.92534 0.89247 0.91557 0.84546 0.82048 0.91988 0.87197 0.91126 0.88960 0.88675 0.92801 0.94051 0.93481 0.96003 0.92500 0.93920 0.95581 0.93585 0.99194 0.93957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.73 37.16 0.36 -1.05 16 2 C -0.07 -0.75 5.47 -27.88 -0.15 -0.90 16 3 C -0.02 -0.25 5.16 -105.48 -0.54 -0.79 16 4 C -0.15 -1.46 9.96 -41.41 -0.41 -1.87 16 5 C -0.26 -2.35 10.92 29.18 0.32 -2.03 16 6 S 0.23 2.26 17.88 -107.50 -1.92 0.33 16 7 C -0.27 -3.43 6.24 -36.79 -0.23 -3.66 16 8 C 0.59 8.56 7.61 -12.90 -0.10 8.47 16 9 O -0.53 -8.73 13.05 5.18 0.07 -8.67 16 10 N -0.60 -8.32 2.84 -183.16 -0.52 -8.84 16 11 C 0.07 0.81 8.67 59.85 0.52 1.33 16 12 C 0.12 1.77 5.78 -4.04 -0.02 1.75 16 13 C 0.05 0.78 6.28 37.16 0.23 1.01 16 14 O -0.37 -7.00 8.86 -35.23 -0.31 -7.31 16 15 C 0.04 0.87 6.28 37.16 0.23 1.10 16 16 C 0.15 3.17 6.12 -4.04 -0.02 3.14 16 17 N -0.60 -14.96 2.89 -181.12 -0.52 -15.49 16 18 C 0.18 4.31 8.61 59.85 0.52 4.82 16 19 C -0.25 -6.94 9.68 -15.06 -0.15 -7.08 16 20 H 0.07 1.77 7.84 -52.49 -0.41 1.35 16 21 C 0.00 0.04 5.13 -17.43 -0.09 -0.05 16 22 N -0.90 -26.11 10.56 55.49 0.59 -25.53 16 23 Si 0.90 21.82 29.57 -169.99 -5.03 16.79 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H 0.06 0.79 7.21 -51.93 -0.37 0.41 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 1.17 6.57 -51.93 -0.34 0.83 16 31 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 32 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.06 0.63 7.75 -51.93 -0.40 0.23 16 35 H 0.11 1.53 7.27 -51.93 -0.38 1.16 16 36 H 0.07 0.81 4.64 -23.38 -0.11 0.70 16 37 H 0.09 1.31 8.07 -51.93 -0.42 0.90 16 38 H 0.10 1.29 7.42 -51.93 -0.39 0.91 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 1.11 8.03 -51.93 -0.42 0.70 16 44 H 0.04 0.82 7.89 -51.93 -0.41 0.41 16 45 H 0.03 0.68 7.64 -51.93 -0.40 0.29 16 46 H 0.05 1.23 6.90 -51.93 -0.36 0.87 16 47 H -0.01 -0.23 7.89 -51.93 -0.41 -0.64 16 48 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 395.12 15.07 5.95 5.95 Total: -1.00 -31.55 395.12 -8.98 -40.53 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -7.75 Total: -1.95 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 0.46 Total: 4.18 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.46 Total: -49.86 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.24 Total: -15.98 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.92 Total: 0.33 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.55 -8.98 -40.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692310341.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.464 kcal (2) G-P(sol) polarization free energy of solvation -31.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds