Wall clock time and date at job start Sat Apr 11 2020 06:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 C 1.53000 * 109.46860 * 125.27738 * 3 2 1 5 5 C 1.50700 * 109.47169 * 180.02562 * 4 3 2 6 6 O 1.21279 * 119.99933 * 359.97438 * 5 4 3 7 7 N 1.34780 * 120.00090 * 180.02562 * 5 4 3 8 8 C 1.46499 * 120.00311 * 180.02562 * 7 5 4 9 9 H 1.09002 * 110.29875 * 327.17211 * 8 7 5 10 10 C 1.54392 * 110.34513 * 89.45510 * 8 7 5 11 11 N 1.48138 * 104.61434 * 95.00749 * 10 8 7 12 12 C 1.34776 * 127.83685 * 219.56462 * 11 10 8 13 13 O 1.21286 * 120.00158 * 180.02562 * 12 11 10 14 14 C 1.50702 * 120.00157 * 0.02562 * 12 11 10 15 15 S 1.81000 * 109.47226 * 180.02562 * 14 12 11 16 16 C 1.76199 * 99.99988 * 180.02562 * 15 14 12 17 17 H 1.08006 * 120.00165 * 359.97438 * 16 15 14 18 18 C 1.38794 * 120.00115 * 180.02562 * 16 15 14 19 19 N 1.31638 * 120.00094 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00101 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47079 * 90.00060 * 20 18 16 22 22 H 1.48500 * 109.47321 * 210.00193 * 20 18 16 23 23 H 1.48496 * 109.46960 * 329.99893 * 20 18 16 24 24 C 1.48140 * 104.32588 * 39.58617 * 11 10 8 25 25 C 1.54279 * 110.34455 * 204.99662 * 8 7 5 26 26 C 1.53000 * 110.34267 * 359.97438 * 25 8 7 27 27 C 1.52997 * 110.34455 * 122.14722 * 25 8 7 28 28 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 29 29 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 30 30 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 31 31 H 1.08998 * 109.47474 * 245.27493 * 3 2 1 32 32 H 1.09001 * 109.47291 * 5.27780 * 3 2 1 33 33 H 1.09007 * 109.47145 * 300.00092 * 4 3 2 34 34 H 1.09001 * 109.47134 * 59.99947 * 4 3 2 35 35 H 0.97001 * 119.99921 * 359.97438 * 7 5 4 36 36 H 1.09002 * 110.40770 * 213.79115 * 10 8 7 37 37 H 1.08997 * 110.40735 * 336.22210 * 10 8 7 38 38 H 1.08997 * 109.47427 * 300.00290 * 14 12 11 39 39 H 1.09001 * 109.46621 * 60.00211 * 14 12 11 40 40 H 0.96999 * 119.99968 * 180.02562 * 19 18 16 41 41 H 1.09006 * 110.40993 * 201.62783 * 24 11 10 42 42 H 1.09006 * 110.41208 * 79.19813 * 24 11 10 43 43 H 1.08999 * 109.47265 * 59.99925 * 26 25 8 44 44 H 1.08999 * 109.47028 * 179.97438 * 26 25 8 45 45 H 1.09002 * 109.47288 * 300.00378 * 26 25 8 46 46 H 1.09007 * 109.47042 * 60.00020 * 27 25 8 47 47 H 1.08997 * 109.47321 * 179.97438 * 27 25 8 48 48 H 1.09004 * 109.47358 * 300.00347 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0399 1.3302 1.1776 5 6 3.7929 2.6356 1.1781 6 8 3.5708 3.4640 0.3206 7 7 4.7139 2.8820 2.1307 8 6 5.4456 4.1511 2.1315 9 1 5.5962 4.5015 1.1104 10 6 4.6834 5.2096 2.9576 11 7 5.2938 5.1423 4.3057 12 6 4.6735 5.2266 5.4992 13 8 5.3179 5.1535 6.5241 14 6 3.1791 5.4116 5.5604 15 16 2.6510 5.4887 7.2899 16 6 0.9156 5.7009 7.0707 17 1 0.4985 5.7457 6.0755 18 6 0.0848 5.8114 8.1770 19 7 -1.2117 5.9704 8.0133 20 14 0.8063 5.7346 9.8984 21 1 1.1691 7.1037 10.3446 22 1 -0.1968 5.1598 10.8304 23 1 2.0201 4.8792 9.8886 24 6 6.7408 4.9619 4.0443 25 6 6.8021 3.9878 2.8481 26 6 6.9731 2.5498 3.3419 27 6 7.9489 4.3668 1.9088 28 1 -0.5401 0.9353 0.0045 29 1 -0.5400 -0.9353 -0.0045 30 1 1.8500 -0.9353 -0.0046 31 1 2.6173 1.4049 -0.9334 32 1 1.3589 2.1314 0.0945 33 1 2.4859 1.2304 2.1111 34 1 3.7444 0.5039 1.0831 35 1 4.8918 2.2192 2.8163 36 1 4.8228 6.2010 2.5263 37 1 3.6232 4.9616 3.0075 38 1 2.9068 6.3388 5.0561 39 1 2.6887 4.5723 5.0674 40 1 -1.7922 6.0481 8.7864 41 1 7.2329 4.5268 4.9143 42 1 7.2016 5.9145 3.7828 43 1 6.9350 1.8671 2.4930 44 1 7.9349 2.4503 3.8448 45 1 6.1711 2.3073 4.0392 46 1 7.8346 5.4049 1.5964 47 1 8.8992 4.2469 2.4289 48 1 7.9297 3.7194 1.0321 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701337521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:57 Heat of formation + Delta-G solvation = -55.693527 kcal Electronic energy + Delta-G solvation = -27686.710753 eV Core-core repulsion = 23868.253218 eV Total energy + Delta-G solvation = -3818.457535 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.93616 -39.40484 -37.98026 -35.60078 -34.31827 -33.62589 -32.45101 -31.11650 -29.77813 -28.95052 -27.65983 -26.03754 -25.53074 -24.89795 -22.98679 -20.58954 -20.02848 -19.59341 -19.36796 -17.65956 -17.32398 -16.95530 -16.49018 -16.11779 -15.70772 -15.21770 -14.99681 -14.92197 -14.55095 -14.42976 -13.97043 -13.78814 -13.72200 -13.52544 -13.06119 -12.88100 -12.82121 -12.73668 -12.49663 -12.42854 -12.22510 -12.11324 -11.87790 -11.39209 -11.35008 -11.31079 -11.25146 -11.22341 -11.03404 -11.02202 -10.61627 -10.07273 -9.87649 -9.62620 -9.55970 -9.40789 -9.01788 -8.63646 -8.52327 -6.94349 -6.29991 -4.02332 2.02668 2.42940 2.62968 2.87173 2.95252 3.15981 3.31944 3.48595 3.57181 3.97403 4.23862 4.31568 4.42458 4.50466 4.63518 4.64379 4.78060 4.84889 4.87702 5.02028 5.04159 5.07890 5.09036 5.13887 5.23836 5.28327 5.36227 5.39701 5.43913 5.54469 5.56833 5.57302 5.61928 5.72229 5.72722 5.74542 5.80148 5.90239 5.90855 5.98807 6.13881 6.30228 6.39655 6.53357 7.24014 7.55594 7.93001 8.00028 8.38222 8.40849 9.15933 10.79252 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008090 B = 0.003523 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3460.280266 B = 7946.614055 C =10744.768364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.160 4.160 3 C -0.078 4.078 4 C -0.138 4.138 5 C 0.513 3.487 6 O -0.540 6.540 7 N -0.725 5.725 8 C 0.139 3.861 9 H 0.108 0.892 10 C 0.089 3.911 11 N -0.627 5.627 12 C 0.554 3.446 13 O -0.517 6.517 14 C -0.118 4.118 15 S -0.141 6.141 16 C -0.522 4.522 17 H 0.088 0.912 18 C 0.097 3.903 19 N -0.880 5.880 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.114 3.886 25 C -0.086 4.086 26 C -0.143 4.143 27 C -0.136 4.136 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.404 0.596 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.271 0.729 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.464 -10.508 -17.546 25.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.178 4.178 3 C -0.116 4.116 4 C -0.178 4.178 5 C 0.300 3.700 6 O -0.416 6.416 7 N -0.379 5.379 8 C 0.033 3.967 9 H 0.126 0.874 10 C -0.035 4.035 11 N -0.364 5.364 12 C 0.343 3.657 13 O -0.392 6.392 14 C -0.268 4.268 15 S 0.086 5.914 16 C -0.669 4.669 17 H 0.106 0.894 18 C -0.112 4.112 19 N -0.516 5.516 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.010 4.010 25 C -0.087 4.087 26 C -0.200 4.200 27 C -0.194 4.194 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.242 0.758 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.001 -9.987 -16.429 25.013 hybrid contribution -0.776 -0.185 -0.076 0.801 sum 15.225 -10.172 -16.505 24.651 Atomic orbital electron populations 1.23928 0.96030 1.02087 1.00452 1.22932 0.96110 0.98206 1.00540 1.20490 0.97754 0.95653 0.97676 1.21652 0.99093 0.95288 1.01797 1.20803 0.79296 0.89115 0.80759 1.90709 1.65172 1.48146 1.37611 1.46361 1.40664 1.19648 1.31247 1.21969 0.90172 0.84135 1.00410 0.87373 1.22860 0.99136 0.99163 0.82373 1.48946 1.07998 1.74214 1.05270 1.19941 0.89328 0.75213 0.81245 1.90711 1.67014 1.48900 1.32541 1.23245 0.93240 1.05434 1.04876 1.84758 1.08551 1.96085 1.02042 1.22304 0.89129 1.57791 0.97686 0.89415 1.24702 0.94137 0.93164 0.99196 1.69942 1.02985 1.47267 1.31420 0.86744 0.80858 0.80350 0.83952 1.19185 1.19903 1.15947 1.22407 0.82794 0.98432 0.97333 1.21777 0.94550 0.96783 0.95618 1.21840 1.02515 0.94545 1.01129 1.21837 0.97031 1.01864 0.98640 0.88338 0.88478 0.87418 0.90346 0.90545 0.88430 0.88824 0.75786 0.90003 0.89459 0.88629 0.88751 0.91922 0.89479 0.90887 0.91837 0.91558 0.92088 0.91893 0.91782 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.54 14.32 29.02 0.42 -1.13 16 2 C -0.16 -1.26 9.52 -36.02 -0.34 -1.61 16 3 C -0.08 -0.69 4.95 -27.88 -0.14 -0.83 16 4 C -0.14 -1.08 5.68 -27.88 -0.16 -1.24 16 5 C 0.51 5.25 7.83 -10.98 -0.09 5.16 16 6 O -0.54 -7.40 15.63 5.56 0.09 -7.31 16 7 N -0.72 -6.33 4.52 -52.45 -0.24 -6.57 16 8 C 0.14 1.25 3.04 -66.53 -0.20 1.05 16 9 H 0.11 1.00 7.13 -51.93 -0.37 0.63 16 10 C 0.09 1.00 6.63 -2.41 -0.02 0.98 16 11 N -0.63 -8.36 3.32 -169.31 -0.56 -8.92 16 12 C 0.55 10.05 7.93 -10.98 -0.09 9.96 16 13 O -0.52 -11.18 16.13 5.55 0.09 -11.09 16 14 C -0.12 -2.34 5.13 36.01 0.18 -2.16 16 15 S -0.14 -3.58 18.55 -107.50 -1.99 -5.58 16 16 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 17 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 18 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 19 N -0.88 -26.59 13.97 55.49 0.78 -25.82 16 20 Si 0.86 21.77 27.74 -169.99 -4.72 17.05 16 21 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 24 C 0.11 1.17 6.14 -2.41 -0.01 1.16 16 25 C -0.09 -0.65 1.03 -153.11 -0.16 -0.81 16 26 C -0.14 -0.99 7.09 37.16 0.26 -0.72 16 27 C -0.14 -0.80 8.26 37.16 0.31 -0.49 16 28 H 0.10 0.84 7.84 -52.49 -0.41 0.43 16 29 H 0.10 0.68 8.06 -52.49 -0.42 0.26 16 30 H 0.11 0.69 8.06 -52.49 -0.42 0.27 16 31 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.08 0.79 7.75 -51.93 -0.40 0.39 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.40 3.02 5.92 -40.82 -0.24 2.78 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 1.10 7.22 -51.93 -0.37 0.72 16 38 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16 39 H 0.09 1.78 7.95 -51.92 -0.41 1.37 16 40 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.09 1.00 7.60 -51.93 -0.39 0.61 16 42 H 0.07 0.68 7.84 -51.93 -0.41 0.27 16 43 H 0.06 0.37 7.76 -51.93 -0.40 -0.04 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.50 6.98 -51.93 -0.36 0.13 16 46 H 0.06 0.35 8.10 -51.93 -0.42 -0.07 16 47 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 403.54 15.07 6.08 6.08 Total: -1.00 -35.15 403.54 -8.30 -43.44 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -8.00 Total: 1.43 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: 0.18 Total: -2.72 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: -0.02 Total: -41.31 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.18 Total: -18.40 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.72 Total: 17.05 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.15 -8.30 -43.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701337521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.250 kcal (2) G-P(sol) polarization free energy of solvation -35.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds