Wall clock time and date at job start Sat Apr 11 2020 06:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47331 * 2 1 4 4 C 1.50700 * 115.55243 * 294.74839 * 3 2 1 5 5 O 1.21279 * 120.00166 * 123.23609 * 4 3 2 6 6 N 1.34776 * 119.99461 * 303.23066 * 4 3 2 7 7 C 1.46498 * 119.99893 * 174.95235 * 6 4 3 8 8 H 1.09002 * 110.78178 * 36.78356 * 7 6 4 9 9 C 1.55162 * 110.72197 * 273.54724 * 7 6 4 10 10 C 1.54910 * 101.61937 * 206.11452 * 9 7 6 11 11 N 1.47526 * 104.77941 * 37.00197 * 10 9 7 12 12 C 1.34779 * 125.63118 * 155.84494 * 11 10 9 13 13 O 1.21283 * 119.99582 * 180.02562 * 12 11 10 14 14 C 1.50692 * 120.00191 * 0.04278 * 12 11 10 15 15 S 1.81004 * 109.47151 * 179.97438 * 14 12 11 16 16 C 1.76204 * 100.00025 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99996 * 0.02562 * 16 15 14 18 18 C 1.38800 * 119.99897 * 180.02562 * 16 15 14 19 19 N 1.31625 * 119.99713 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00107 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47052 * 90.00069 * 20 18 16 22 22 H 1.48501 * 109.47047 * 210.00003 * 20 18 16 23 23 H 1.48506 * 109.46877 * 329.99756 * 20 18 16 24 24 C 1.47019 * 108.71913 * 335.88236 * 11 10 9 25 25 H 1.08999 * 109.88313 * 120.47489 * 24 11 10 26 26 C 1.52998 * 110.01028 * 241.56776 * 24 11 10 27 27 C 1.53005 * 117.49505 * 80.41482 * 3 2 1 28 28 C 1.53007 * 117.50002 * 149.06990 * 3 2 1 29 29 H 1.08995 * 109.47189 * 175.89193 * 1 2 3 30 30 H 1.08999 * 109.46827 * 295.89464 * 1 2 3 31 31 H 1.09005 * 109.46999 * 55.88933 * 1 2 3 32 32 H 1.08995 * 109.47162 * 240.00031 * 2 1 3 33 33 H 1.09000 * 109.47287 * 120.00065 * 2 1 3 34 34 H 0.96998 * 120.00230 * 354.95322 * 6 4 3 35 35 H 1.09001 * 111.00038 * 324.20856 * 9 7 6 36 36 H 1.09002 * 111.00568 * 88.01755 * 9 7 6 37 37 H 1.08998 * 110.36661 * 155.86271 * 10 9 7 38 38 H 1.08996 * 110.36347 * 278.18913 * 10 9 7 39 39 H 1.09004 * 109.47117 * 299.99651 * 14 12 11 40 40 H 1.08995 * 109.47382 * 60.00118 * 14 12 11 41 41 H 0.97000 * 120.00047 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.47131 * 177.88504 * 26 24 11 43 43 H 1.09000 * 109.47395 * 297.88172 * 26 24 11 44 44 H 1.08998 * 109.47203 * 57.88187 * 26 24 11 45 45 H 1.09000 * 117.49453 * 214.99821 * 27 3 2 46 46 H 1.08997 * 117.50415 * 0.02562 * 27 3 2 47 47 H 1.08996 * 117.49513 * 359.97438 * 28 3 2 48 48 H 1.09000 * 117.49482 * 144.97066 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.7201 2.2451 -1.2347 5 8 1.1104 3.2890 -1.1383 6 7 2.1118 1.8027 -2.4461 7 6 1.7065 2.5236 -3.6553 8 1 1.6978 3.5993 -3.4796 9 6 0.3173 2.0363 -4.1454 10 6 0.3926 2.3516 -5.6602 11 7 1.7891 2.0605 -6.0363 12 6 2.2194 1.7446 -7.2739 13 8 3.3959 1.5234 -7.4687 14 6 1.2389 1.6667 -8.4155 15 16 2.1167 1.2254 -9.9357 16 6 0.7698 1.2044 -11.0716 17 1 -0.2295 1.4280 -10.7285 18 6 0.9933 0.9006 -12.4074 19 7 -0.0128 0.8854 -13.2560 20 14 2.7216 0.5132 -13.0007 21 1 2.9694 -0.9464 -12.8845 22 1 2.8624 0.9277 -14.4198 23 1 3.7071 1.2504 -12.1696 24 6 2.6333 2.1709 -4.8378 25 1 3.1324 1.2209 -4.6470 26 6 3.6741 3.2757 -5.0305 27 6 2.0625 2.1838 1.3383 28 6 3.3732 1.7205 0.6976 29 1 -0.3633 -1.0250 -0.0736 30 1 -0.3633 0.4488 0.9245 31 1 -0.3633 0.5763 -0.8509 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.6620 1.0070 -2.5173 35 1 0.1960 0.9666 -3.9746 36 1 -0.4849 2.5994 -3.6684 37 1 -0.2922 1.7108 -6.2156 38 1 0.1620 3.4015 -5.8409 39 1 0.4863 0.9089 -8.1970 40 1 0.7537 2.6341 -8.5444 41 1 0.1432 0.6727 -14.1895 42 1 4.2704 3.3754 -4.1235 43 1 4.3249 3.0200 -5.8667 44 1 3.1687 4.2187 -5.2387 45 1 1.8459 3.2520 1.3255 46 1 1.7143 1.6438 2.2187 47 1 3.8866 0.8757 1.1568 48 1 4.0190 2.4834 0.2630 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701720509.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:13 Heat of formation + Delta-G solvation = -54.164562 kcal Electronic energy + Delta-G solvation = -27416.691217 eV Core-core repulsion = 23598.299983 eV Total energy + Delta-G solvation = -3818.391234 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.91155 -39.91763 -37.86384 -36.95997 -34.51168 -32.45617 -32.38777 -31.82810 -31.03467 -28.72727 -26.31621 -25.63002 -24.70750 -23.26048 -22.99981 -22.75166 -21.21755 -20.09543 -18.92432 -17.72704 -17.28241 -17.18006 -16.39283 -15.86672 -15.79817 -15.32025 -15.06679 -14.89878 -14.37620 -14.29323 -14.14808 -13.95199 -13.79109 -13.59560 -13.03051 -13.01540 -12.85539 -12.77308 -12.63378 -12.26826 -12.13915 -11.96129 -11.92660 -11.75586 -11.65502 -11.47289 -11.28399 -11.05425 -11.01124 -10.88235 -10.63196 -10.50765 -10.10024 -9.87337 -9.55717 -9.40030 -9.02029 -8.68041 -8.52113 -6.94186 -6.30348 -4.02413 2.17339 2.44018 2.80265 2.89932 3.18532 3.24975 3.31738 3.48938 3.57436 4.03207 4.07904 4.24626 4.28804 4.31625 4.33913 4.46261 4.67708 4.72205 4.85361 4.90239 4.94290 4.98752 5.05539 5.08651 5.10019 5.15236 5.22162 5.35642 5.40313 5.44698 5.47947 5.50507 5.50804 5.60896 5.65100 5.66554 5.72471 5.76743 5.80962 5.84527 5.98738 6.10547 6.14126 6.35975 7.09022 7.50589 7.84569 7.92656 8.38305 8.40291 9.15680 10.78833 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026124 B = 0.002129 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.570445 B =13150.708853 C =13446.523610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.080 4.080 3 C -0.163 4.163 4 C 0.557 3.443 5 O -0.534 6.534 6 N -0.716 5.716 7 C 0.137 3.863 8 H 0.107 0.893 9 C -0.144 4.144 10 C 0.100 3.900 11 N -0.620 5.620 12 C 0.550 3.450 13 O -0.514 6.514 14 C -0.118 4.118 15 S -0.142 6.142 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.095 3.905 19 N -0.880 5.880 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.135 3.865 25 H 0.078 0.922 26 C -0.163 4.163 27 C -0.143 4.143 28 C -0.158 4.158 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.403 0.597 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.271 0.729 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.059 0.941 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.105 0.895 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.980 0.402 30.319 30.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.118 4.118 3 C -0.166 4.166 4 C 0.343 3.657 5 O -0.410 6.410 6 N -0.367 5.367 7 C 0.032 3.968 8 H 0.125 0.875 9 C -0.183 4.183 10 C -0.023 4.023 11 N -0.358 5.358 12 C 0.338 3.662 13 O -0.389 6.389 14 C -0.268 4.268 15 S 0.085 5.915 16 C -0.668 4.668 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.516 5.516 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C 0.031 3.969 25 H 0.096 0.904 26 C -0.221 4.221 27 C -0.180 4.180 28 C -0.195 4.195 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.238 0.762 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.233 0.782 29.798 30.107 hybrid contribution -0.686 -0.368 -0.385 0.868 sum 3.547 0.415 29.413 29.629 Atomic orbital electron populations 1.21739 0.94885 1.01859 1.02420 1.21040 0.96534 0.91361 1.02855 1.21549 1.04385 0.97564 0.93079 1.19473 0.78130 0.84737 0.83395 1.90710 1.40429 1.23384 1.86456 1.45862 1.54515 1.31138 1.05209 1.22057 0.93471 0.98150 0.83157 0.87505 1.23217 0.97561 1.02653 0.94865 1.22350 0.83566 1.01634 0.94756 1.48497 1.08624 1.71335 1.07318 1.19987 0.89236 0.75415 0.81525 1.90695 1.17612 1.48044 1.82507 1.23260 1.01095 1.05653 0.96834 1.84780 1.15509 1.91694 0.99556 1.22301 0.94485 1.55102 0.94955 0.89372 1.24714 0.97573 0.93537 0.95507 1.69936 1.30936 1.46667 1.04079 0.86733 0.85177 0.80431 0.79496 1.19215 1.19932 1.15930 1.21542 0.91446 0.99700 0.84250 0.90418 1.22145 0.98977 0.97982 1.02973 1.23005 0.99697 1.01458 0.93828 1.23120 0.90002 1.03786 1.02576 0.92227 0.92364 0.92644 0.91147 0.90787 0.76191 0.90070 0.89257 0.89654 0.90802 0.88565 0.88465 0.91927 0.91909 0.90432 0.92185 0.87669 0.87895 0.87692 0.88314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.83 37.16 0.37 -0.55 16 2 C -0.08 -0.42 5.79 -26.73 -0.15 -0.57 16 3 C -0.16 -1.08 1.91 -155.65 -0.30 -1.38 16 4 C 0.56 5.11 6.46 -10.99 -0.07 5.04 16 5 O -0.53 -6.89 16.20 5.56 0.09 -6.80 16 6 N -0.72 -5.54 5.18 -52.03 -0.27 -5.81 16 7 C 0.14 1.25 2.80 -66.09 -0.18 1.06 16 8 H 0.11 1.10 7.35 -51.93 -0.38 0.72 16 9 C -0.14 -1.24 6.76 -24.58 -0.17 -1.41 16 10 C 0.10 1.02 6.70 -2.47 -0.02 1.01 16 11 N -0.62 -8.17 3.07 -162.95 -0.50 -8.67 16 12 C 0.55 9.75 7.66 -10.99 -0.08 9.67 16 13 O -0.51 -10.83 14.92 5.55 0.08 -10.74 16 14 C -0.12 -2.28 5.16 36.00 0.19 -2.09 16 15 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 16 C -0.52 -14.91 10.04 30.94 0.31 -14.60 16 17 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 18 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 19 N -0.88 -26.43 13.97 55.49 0.78 -25.65 16 20 Si 0.86 21.68 27.74 -169.99 -4.72 16.97 16 21 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 24 C 0.14 1.48 3.20 -66.96 -0.21 1.26 16 25 H 0.08 0.84 7.69 -51.93 -0.40 0.45 16 26 C -0.16 -1.84 9.10 37.16 0.34 -1.50 16 27 C -0.14 -0.89 9.76 -26.69 -0.26 -1.15 16 28 C -0.16 -0.84 9.93 -26.69 -0.26 -1.10 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.42 7.59 -51.93 -0.39 0.02 16 32 H 0.07 0.32 7.98 -51.93 -0.41 -0.09 16 33 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 34 H 0.40 2.38 8.15 -40.82 -0.33 2.05 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.84 7.48 -51.93 -0.39 0.46 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.10 1.73 7.85 -51.91 -0.41 1.33 16 40 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 41 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 1.09 6.91 -51.93 -0.36 0.73 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.10 0.81 7.85 -51.93 -0.41 0.40 16 46 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 404.02 15.07 6.09 6.09 Total: -1.00 -34.76 404.02 -9.18 -43.94 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -8.13 Total: -0.13 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -0.61 Total: -3.63 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.01 Total: -40.13 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.17 Total: -17.54 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.72 Total: 16.97 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.76 -9.18 -43.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701720509.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.220 kcal (2) G-P(sol) polarization free energy of solvation -34.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds