Wall clock time and date at job start Sat Apr 11 2020 06:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47126 * 2 1 4 4 C 1.50697 * 112.90839 * 293.78865 * 3 2 1 5 5 O 1.21280 * 120.00173 * 125.47025 * 4 3 2 6 6 N 1.34777 * 119.99615 * 305.46721 * 4 3 2 7 7 C 1.46505 * 119.99740 * 174.87927 * 6 4 3 8 8 H 1.09004 * 112.84783 * 25.33402 * 7 6 4 9 9 C 1.53782 * 113.61384 * 156.52836 * 7 6 4 10 10 C 1.53777 * 87.07990 * 139.98578 * 9 7 6 11 11 H 1.08999 * 113.61244 * 220.02072 * 10 9 7 12 12 N 1.46499 * 113.61977 * 89.11532 * 10 9 7 13 13 C 1.34771 * 120.00339 * 154.99694 * 12 10 9 14 14 O 1.21288 * 119.99963 * 0.02562 * 13 12 10 15 15 C 1.50704 * 120.00288 * 180.02562 * 13 12 10 16 16 S 1.80997 * 109.47334 * 180.02562 * 15 13 12 17 17 C 1.76192 * 99.99954 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00311 * 359.97438 * 17 16 15 19 19 C 1.38806 * 120.00140 * 179.97438 * 17 16 15 20 20 N 1.31628 * 120.00414 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99500 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47021 * 90.00281 * 21 19 17 23 23 H 1.48509 * 109.46810 * 209.99819 * 21 19 17 24 24 H 1.48499 * 109.47467 * 329.99761 * 21 19 17 25 25 C 1.53776 * 113.61710 * 254.14027 * 7 6 4 26 26 C 1.53784 * 113.61385 * 65.03945 * 3 2 1 27 27 C 1.53775 * 87.17175 * 139.93453 * 26 3 2 28 28 C 1.53783 * 113.61250 * 162.53413 * 3 2 1 29 29 H 1.08997 * 109.47134 * 302.57419 * 1 2 3 30 30 H 1.08999 * 109.47109 * 62.57519 * 1 2 3 31 31 H 1.09000 * 109.47357 * 182.57274 * 1 2 3 32 32 H 1.09003 * 109.47398 * 240.00436 * 2 1 3 33 33 H 1.08995 * 109.47502 * 120.00553 * 2 1 3 34 34 H 0.97001 * 120.00626 * 354.88141 * 6 4 3 35 35 H 1.09008 * 113.61330 * 254.53020 * 9 7 6 36 36 H 1.08996 * 113.61213 * 25.35153 * 9 7 6 37 37 H 0.97005 * 119.99803 * 334.99992 * 12 10 9 38 38 H 1.08998 * 109.46963 * 300.00382 * 15 13 12 39 39 H 1.09003 * 109.46947 * 60.00279 * 15 13 12 40 40 H 0.96996 * 119.99916 * 180.02562 * 20 19 17 41 41 H 1.08998 * 113.61371 * 334.56489 * 25 7 6 42 42 H 1.08999 * 113.61967 * 105.46975 * 25 7 6 43 43 H 1.08995 * 113.61105 * 254.53539 * 26 3 2 44 44 H 1.09003 * 113.60800 * 25.34532 * 26 3 2 45 45 H 1.09006 * 113.61267 * 89.15994 * 27 26 3 46 46 H 1.09002 * 113.61638 * 220.05314 * 27 26 3 47 47 H 1.09001 * 113.61829 * 334.56971 * 28 3 2 48 48 H 1.08997 * 113.61183 * 105.38685 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7076 2.1822 -1.2702 5 8 1.1133 3.2382 -1.2192 6 7 2.0710 1.6703 -2.4628 7 6 1.6513 2.3301 -3.7017 8 1 1.4545 3.3940 -3.5689 9 6 2.5573 2.0166 -4.9041 10 6 1.2751 1.9373 -5.7493 11 1 1.2836 1.1292 -6.4807 12 7 0.8708 3.2226 -6.3244 13 6 0.1204 3.2540 -7.4435 14 8 -0.2205 2.2181 -7.9743 15 6 -0.2950 4.5762 -8.0354 16 16 -1.2875 4.2870 -9.5211 17 6 -1.6255 5.9509 -9.9919 18 1 -1.2404 6.7683 -9.4005 19 6 -2.3869 6.2111 -11.1230 20 7 -2.6399 7.4541 -11.4745 21 14 -3.0524 4.7971 -12.1464 22 1 -4.3920 4.4061 -11.6385 23 1 -3.1658 5.2230 -13.5646 24 1 -2.1287 3.6384 -12.0499 25 6 0.5319 1.5852 -4.4478 26 6 1.6847 2.2215 1.2775 27 6 3.0936 2.8335 1.2047 28 6 3.5126 1.5752 0.4229 29 1 -0.3633 0.5533 0.8660 30 1 -0.3633 0.4733 -0.9122 31 1 -0.3634 -1.0266 0.0461 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.6103 0.8649 -2.5010 35 1 3.2137 2.8410 -5.1828 36 1 3.0843 1.0665 -4.8176 37 1 1.1432 4.0511 -5.8998 38 1 -0.8858 5.1310 -7.3065 39 1 0.5927 5.1520 -8.2974 40 1 -3.1722 7.6359 -12.2647 41 1 0.5031 0.5162 -4.2371 42 1 -0.4444 2.0616 -4.3588 43 1 0.8849 2.9486 1.1372 44 1 1.5298 1.5845 2.1483 45 1 3.1418 3.7496 0.6160 46 1 3.5796 2.9274 2.1759 47 1 3.8588 0.7618 1.0605 48 1 4.1886 1.7793 -0.4074 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703901698.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:40 Heat of formation + Delta-G solvation = -46.056573 kcal Electronic energy + Delta-G solvation = -26849.087559 eV Core-core repulsion = 23031.047914 eV Total energy + Delta-G solvation = -3818.039645 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.31193 -40.14740 -38.48216 -37.38091 -34.40977 -33.16684 -32.44642 -32.37028 -29.23781 -27.03777 -26.07825 -25.98715 -25.62305 -24.62977 -22.73420 -21.65189 -21.10396 -19.94798 -19.23785 -17.88583 -17.07868 -16.85523 -16.23809 -16.12752 -16.00127 -15.47576 -15.02272 -14.97305 -14.80856 -14.48440 -14.27619 -13.78241 -13.71884 -13.43343 -13.29123 -13.02600 -12.92882 -12.79207 -12.79088 -12.41044 -12.29076 -12.02509 -11.88499 -11.59389 -11.34611 -11.26523 -11.12850 -11.00476 -10.86230 -10.66224 -10.60484 -10.59647 -9.98402 -9.85668 -9.56727 -9.37314 -9.02449 -8.97426 -8.50500 -6.91804 -6.28364 -4.00257 2.27059 2.72976 2.78008 2.90764 3.26742 3.33910 3.50508 3.62876 3.90376 4.05348 4.09610 4.20648 4.26978 4.33382 4.36436 4.52313 4.62903 4.69572 4.74189 4.75726 4.93802 4.98822 5.10586 5.20101 5.21274 5.24973 5.29890 5.30414 5.31616 5.44775 5.49592 5.52155 5.54943 5.59231 5.69079 5.75568 5.77557 5.77930 5.84064 5.85009 5.95647 6.01693 6.16245 6.55493 7.14877 7.55997 7.90088 7.94672 8.42475 8.44954 9.17650 10.80842 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025325 B = 0.001851 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.382032 B =15125.003274 C =15353.236386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.102 4.102 3 C -0.111 4.111 4 C 0.541 3.459 5 O -0.533 6.533 6 N -0.718 5.718 7 C 0.121 3.879 8 H 0.115 0.885 9 C -0.152 4.152 10 C 0.129 3.871 11 H 0.109 0.891 12 N -0.720 5.720 13 C 0.535 3.465 14 O -0.517 6.517 15 C -0.125 4.125 16 S -0.141 6.141 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.164 4.164 26 C -0.116 4.116 27 C -0.143 4.143 28 C -0.123 4.123 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.400 0.600 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.401 0.599 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.271 0.729 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.091 0.909 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.124 -15.865 26.902 34.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.140 4.140 3 C -0.114 4.114 4 C 0.327 3.673 5 O -0.408 6.408 6 N -0.368 5.368 7 C 0.016 3.984 8 H 0.133 0.867 9 C -0.191 4.191 10 C 0.022 3.978 11 H 0.127 0.873 12 N -0.374 5.374 13 C 0.321 3.679 14 O -0.391 6.391 15 C -0.275 4.275 16 S 0.085 5.915 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.114 4.114 20 N -0.516 5.516 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.205 4.205 26 C -0.154 4.154 27 C -0.180 4.180 28 C -0.161 4.161 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.235 0.765 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.235 0.765 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.089 0.911 47 H 0.110 0.890 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.012 -16.687 25.904 33.850 hybrid contribution 0.357 0.866 0.235 0.965 sum 14.368 -15.821 26.139 33.764 Atomic orbital electron populations 1.21768 0.95089 1.01869 1.02489 1.21453 0.96673 0.93254 1.02602 1.22082 0.98797 0.96506 0.94045 1.19946 0.78073 0.84890 0.84362 1.90710 1.40767 1.22268 1.87088 1.45927 1.55243 1.30299 1.05347 1.22669 0.95375 0.98707 0.81617 0.86691 1.23730 0.97097 1.03523 0.94786 1.21569 0.93860 0.87965 0.94410 0.87274 1.45684 1.55348 1.08070 1.28280 1.20309 0.76957 0.91317 0.79315 1.90698 1.53454 1.34754 1.60230 1.23287 1.04468 0.96917 1.02876 1.84771 1.66332 1.13449 1.26947 1.22317 1.39223 0.89966 1.15402 0.89356 1.24722 0.94532 0.95838 0.96267 1.69937 1.37656 1.18314 1.25737 0.86731 0.81383 0.83667 0.80033 1.19209 1.19944 1.15934 1.23988 0.99428 1.01434 0.95602 1.22822 0.98365 0.99104 0.95122 1.22882 0.96763 0.97632 1.00746 1.22998 0.93595 0.99164 1.00347 0.92246 0.92675 0.92354 0.91634 0.90802 0.76532 0.89930 0.88364 0.76482 0.88384 0.88351 0.91941 0.88969 0.90332 0.89942 0.89465 0.89876 0.91065 0.89017 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.62 37.16 0.36 -0.62 16 2 C -0.10 -0.50 5.29 -26.73 -0.14 -0.65 16 3 C -0.11 -0.71 0.80 -154.84 -0.12 -0.84 16 4 C 0.54 4.97 5.88 -10.99 -0.06 4.90 16 5 O -0.53 -7.16 15.47 5.56 0.09 -7.07 16 6 N -0.72 -5.02 5.24 -53.02 -0.28 -5.29 16 7 C 0.12 0.99 4.12 -67.12 -0.28 0.71 16 8 H 0.12 1.16 7.45 -51.93 -0.39 0.77 16 9 C -0.15 -1.04 7.58 -25.92 -0.20 -1.24 16 10 C 0.13 1.32 4.33 -67.03 -0.29 1.03 16 11 H 0.11 1.28 7.47 -51.93 -0.39 0.90 16 12 N -0.72 -8.84 5.26 -52.93 -0.28 -9.11 16 13 C 0.53 9.30 7.85 -10.99 -0.09 9.21 16 14 O -0.52 -10.92 15.46 5.55 0.09 -10.83 16 15 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 16 S -0.14 -3.58 18.55 -107.50 -1.99 -5.58 16 17 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 18 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 19 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 20 N -0.88 -26.67 13.97 55.49 0.78 -25.89 16 21 Si 0.86 21.86 27.74 -169.99 -4.71 17.14 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 25 C -0.16 -1.54 7.69 -25.83 -0.20 -1.74 16 26 C -0.12 -0.80 6.25 -25.92 -0.16 -0.96 16 27 C -0.14 -0.91 7.81 -25.83 -0.20 -1.11 16 28 C -0.12 -0.62 7.22 -25.83 -0.19 -0.80 16 29 H 0.06 0.39 7.53 -51.93 -0.39 0.00 16 30 H 0.05 0.45 7.68 -51.93 -0.40 0.05 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.26 7.53 -51.93 -0.39 -0.13 16 33 H 0.07 0.28 8.05 -51.93 -0.42 -0.14 16 34 H 0.40 1.76 8.13 -40.82 -0.33 1.42 16 35 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.10 0.48 8.11 -51.93 -0.42 0.06 16 37 H 0.40 3.95 8.70 -40.82 -0.36 3.60 16 38 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 39 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 40 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.08 0.76 7.38 -51.93 -0.38 0.37 16 44 H 0.09 0.46 8.10 -51.93 -0.42 0.04 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.09 0.32 8.04 -51.93 -0.42 -0.10 16 48 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 LS Contribution 402.50 15.07 6.07 6.07 Total: -1.00 -35.75 402.50 -9.47 -45.22 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -8.08 Total: 1.71 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -1.13 Total: -6.36 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.22 Total: -40.30 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.17 Total: -17.90 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.14 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.75 -9.47 -45.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703901698.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.838 kcal (2) G-P(sol) polarization free energy of solvation -35.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds