Wall clock time and date at job start Sat Apr 11 2020 06:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47126 * 2 1 4 4 C 1.50697 * 112.90839 * 293.78865 * 3 2 1 5 5 O 1.21280 * 120.00173 * 125.47025 * 4 3 2 6 6 N 1.34777 * 119.99615 * 305.46721 * 4 3 2 7 7 C 1.46505 * 119.99740 * 174.87927 * 6 4 3 8 8 H 1.09004 * 112.84783 * 25.33402 * 7 6 4 9 9 C 1.53782 * 113.61384 * 156.52836 * 7 6 4 10 10 C 1.53777 * 87.07990 * 139.98578 * 9 7 6 11 11 H 1.08999 * 113.61244 * 220.02072 * 10 9 7 12 12 N 1.46499 * 113.61977 * 89.11532 * 10 9 7 13 13 C 1.34771 * 120.00339 * 154.99694 * 12 10 9 14 14 O 1.21288 * 119.99963 * 0.02562 * 13 12 10 15 15 C 1.50704 * 120.00288 * 180.02562 * 13 12 10 16 16 S 1.80997 * 109.47334 * 180.02562 * 15 13 12 17 17 C 1.76192 * 99.99954 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00311 * 359.97438 * 17 16 15 19 19 C 1.38806 * 120.00140 * 179.97438 * 17 16 15 20 20 N 1.31628 * 120.00414 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99500 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47021 * 90.00281 * 21 19 17 23 23 H 1.48509 * 109.46810 * 209.99819 * 21 19 17 24 24 H 1.48499 * 109.47467 * 329.99761 * 21 19 17 25 25 C 1.53776 * 113.61710 * 254.14027 * 7 6 4 26 26 C 1.53784 * 113.61385 * 65.03945 * 3 2 1 27 27 C 1.53775 * 87.17175 * 139.93453 * 26 3 2 28 28 C 1.53783 * 113.61250 * 162.53413 * 3 2 1 29 29 H 1.08997 * 109.47134 * 302.57419 * 1 2 3 30 30 H 1.08999 * 109.47109 * 62.57519 * 1 2 3 31 31 H 1.09000 * 109.47357 * 182.57274 * 1 2 3 32 32 H 1.09003 * 109.47398 * 240.00436 * 2 1 3 33 33 H 1.08995 * 109.47502 * 120.00553 * 2 1 3 34 34 H 0.97001 * 120.00626 * 354.88141 * 6 4 3 35 35 H 1.09008 * 113.61330 * 254.53020 * 9 7 6 36 36 H 1.08996 * 113.61213 * 25.35153 * 9 7 6 37 37 H 0.97005 * 119.99803 * 334.99992 * 12 10 9 38 38 H 1.08998 * 109.46963 * 300.00382 * 15 13 12 39 39 H 1.09003 * 109.46947 * 60.00279 * 15 13 12 40 40 H 0.96996 * 119.99916 * 180.02562 * 20 19 17 41 41 H 1.08998 * 113.61371 * 334.56489 * 25 7 6 42 42 H 1.08999 * 113.61967 * 105.46975 * 25 7 6 43 43 H 1.08995 * 113.61105 * 254.53539 * 26 3 2 44 44 H 1.09003 * 113.60800 * 25.34532 * 26 3 2 45 45 H 1.09006 * 113.61267 * 89.15994 * 27 26 3 46 46 H 1.09002 * 113.61638 * 220.05314 * 27 26 3 47 47 H 1.09001 * 113.61829 * 334.56971 * 28 3 2 48 48 H 1.08997 * 113.61183 * 105.38685 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7076 2.1822 -1.2702 5 8 1.1133 3.2382 -1.2192 6 7 2.0710 1.6703 -2.4628 7 6 1.6513 2.3301 -3.7017 8 1 1.4545 3.3940 -3.5689 9 6 2.5573 2.0166 -4.9041 10 6 1.2751 1.9373 -5.7493 11 1 1.2836 1.1292 -6.4807 12 7 0.8708 3.2226 -6.3244 13 6 0.1204 3.2540 -7.4435 14 8 -0.2205 2.2181 -7.9743 15 6 -0.2950 4.5762 -8.0354 16 16 -1.2875 4.2870 -9.5211 17 6 -1.6255 5.9509 -9.9919 18 1 -1.2404 6.7683 -9.4005 19 6 -2.3869 6.2111 -11.1230 20 7 -2.6399 7.4541 -11.4745 21 14 -3.0524 4.7971 -12.1464 22 1 -4.3920 4.4061 -11.6385 23 1 -3.1658 5.2230 -13.5646 24 1 -2.1287 3.6384 -12.0499 25 6 0.5319 1.5852 -4.4478 26 6 1.6847 2.2215 1.2775 27 6 3.0936 2.8335 1.2047 28 6 3.5126 1.5752 0.4229 29 1 -0.3633 0.5533 0.8660 30 1 -0.3633 0.4733 -0.9122 31 1 -0.3634 -1.0266 0.0461 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.6103 0.8649 -2.5010 35 1 3.2137 2.8410 -5.1828 36 1 3.0843 1.0665 -4.8176 37 1 1.1432 4.0511 -5.8998 38 1 -0.8858 5.1310 -7.3065 39 1 0.5927 5.1520 -8.2974 40 1 -3.1722 7.6359 -12.2647 41 1 0.5031 0.5162 -4.2371 42 1 -0.4444 2.0616 -4.3588 43 1 0.8849 2.9486 1.1372 44 1 1.5298 1.5845 2.1483 45 1 3.1418 3.7496 0.6160 46 1 3.5796 2.9274 2.1759 47 1 3.8588 0.7618 1.0605 48 1 4.1886 1.7793 -0.4074 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001703901698.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:39 Heat of formation + Delta-G solvation = -71.190700 kcal Electronic energy + Delta-G solvation = -26850.177456 eV Core-core repulsion = 23031.047914 eV Total energy + Delta-G solvation = -3819.129543 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.97097 -41.11678 -39.53181 -38.16647 -35.31815 -34.68506 -33.87846 -33.20376 -30.69038 -27.89391 -27.60808 -26.77186 -26.45235 -25.38003 -23.32182 -22.30144 -22.19209 -20.82772 -20.05501 -19.75007 -18.19916 -17.44424 -17.38827 -17.16775 -17.01479 -16.63625 -16.49185 -16.02895 -15.87548 -15.36451 -15.17268 -14.98164 -14.82567 -14.51989 -14.37368 -14.07025 -13.92116 -13.47940 -13.42531 -13.38689 -13.33861 -13.11479 -13.01985 -12.81018 -12.61260 -12.37443 -12.06838 -11.95124 -11.87115 -11.80826 -11.63581 -11.18287 -11.15146 -11.06193 -11.04697 -10.68332 -10.56099 -10.19808 -9.98196 -9.01101 -8.52578 -6.23727 0.96939 1.30899 1.45480 1.50455 1.54510 1.58553 2.15837 2.18271 2.24742 2.69540 2.85426 3.36360 3.41944 3.52252 3.61615 3.71631 3.79334 3.86958 3.90124 4.00627 4.05042 4.21107 4.32626 4.44501 4.45946 4.52963 4.58883 4.69933 4.77990 4.80072 4.83805 4.85923 4.91001 4.98987 4.99593 5.01937 5.05892 5.10888 5.14276 5.32345 5.36992 5.41997 5.48538 5.61087 5.69485 6.10261 6.40548 6.56852 6.92188 7.14847 7.26466 8.59855 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025325 B = 0.001851 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.382032 B =15125.003274 C =15353.236386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.097 4.097 3 C -0.110 4.110 4 C 0.536 3.464 5 O -0.585 6.585 6 N -0.702 5.702 7 C 0.123 3.877 8 H 0.094 0.906 9 C -0.125 4.125 10 C 0.115 3.885 11 H 0.099 0.901 12 N -0.699 5.699 13 C 0.540 3.460 14 O -0.558 6.558 15 C -0.114 4.114 16 S -0.172 6.172 17 C -0.531 4.531 18 H 0.061 0.939 19 C 0.044 3.956 20 N -0.917 5.917 21 Si 0.916 3.084 22 H -0.263 1.263 23 H -0.258 1.258 24 H -0.235 1.235 25 C -0.161 4.161 26 C -0.121 4.121 27 C -0.148 4.148 28 C -0.108 4.108 29 H 0.051 0.949 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.417 0.583 35 H 0.092 0.908 36 H 0.130 0.870 37 H 0.414 0.586 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.277 0.723 41 H 0.110 0.890 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.108 0.892 45 H 0.057 0.943 46 H 0.085 0.915 47 H 0.119 0.881 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.379 -18.714 28.300 38.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.135 4.135 3 C -0.114 4.114 4 C 0.323 3.677 5 O -0.464 6.464 6 N -0.353 5.353 7 C 0.017 3.983 8 H 0.112 0.888 9 C -0.164 4.164 10 C 0.009 3.991 11 H 0.117 0.883 12 N -0.352 5.352 13 C 0.326 3.674 14 O -0.436 6.436 15 C -0.265 4.265 16 S 0.055 5.945 17 C -0.678 4.678 18 H 0.079 0.921 19 C -0.162 4.162 20 N -0.555 5.555 21 Si 0.738 3.262 22 H -0.188 1.188 23 H -0.182 1.182 24 H -0.159 1.159 25 C -0.201 4.201 26 C -0.159 4.159 27 C -0.186 4.186 28 C -0.145 4.145 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.255 0.745 35 H 0.110 0.890 36 H 0.148 0.852 37 H 0.251 0.749 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.087 0.913 41 H 0.128 0.872 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.126 0.874 45 H 0.076 0.924 46 H 0.104 0.896 47 H 0.137 0.863 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 16.321 -19.549 27.337 37.361 hybrid contribution -0.306 1.803 -0.026 1.829 sum 16.015 -17.745 27.311 36.294 Atomic orbital electron populations 1.21776 0.96556 1.02124 1.00880 1.21491 0.95268 0.92201 1.04521 1.22073 1.00212 0.96941 0.92125 1.20527 0.77104 0.84359 0.85694 1.90691 1.43181 1.24695 1.87852 1.45783 1.54662 1.30511 1.04390 1.22494 0.95572 0.97592 0.82634 0.88777 1.23653 0.95470 1.05539 0.91722 1.21797 0.96491 0.86336 0.94459 0.88336 1.45482 1.53301 1.09965 1.26414 1.19908 0.77435 0.89707 0.80367 1.90685 1.55509 1.35544 1.61859 1.23288 1.04198 0.98793 1.00213 1.84650 1.68097 1.11030 1.30747 1.22468 1.38946 0.91201 1.15211 0.92084 1.25603 0.94842 0.98247 0.97471 1.70018 1.38621 1.20169 1.26660 0.85843 0.80651 0.80568 0.79147 1.18768 1.18232 1.15915 1.23985 0.98332 1.02441 0.95321 1.22880 0.97606 0.99018 0.96393 1.22870 0.96791 0.97463 1.01461 1.23006 0.92264 0.98827 1.00421 0.93023 0.95120 0.91180 0.90007 0.88525 0.74514 0.88954 0.85181 0.74873 0.87246 0.86641 0.91348 0.87178 0.93059 0.93231 0.87397 0.92449 0.89606 0.86297 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.62 71.98 0.69 -1.08 16 2 C -0.10 -0.67 5.29 30.60 0.16 -0.50 16 3 C -0.11 -1.22 0.80 -52.40 -0.04 -1.26 16 4 C 0.54 9.48 5.88 87.66 0.52 10.00 16 5 O -0.58 -16.41 15.47 -3.03 -0.05 -16.45 16 6 N -0.70 -8.40 5.24 -440.03 -2.30 -10.70 16 7 C 0.12 1.82 4.12 45.52 0.19 2.00 16 8 H 0.09 1.87 7.45 -2.38 -0.02 1.85 16 9 C -0.13 -1.31 7.58 31.12 0.24 -1.07 16 10 C 0.12 2.15 4.33 45.58 0.20 2.35 16 11 H 0.10 2.16 7.47 -2.39 -0.02 2.14 16 12 N -0.70 -16.31 5.26 -439.75 -2.31 -18.62 16 13 C 0.54 18.44 7.85 87.66 0.69 19.12 16 14 O -0.56 -23.44 15.46 -3.05 -0.05 -23.49 16 15 C -0.11 -4.34 6.16 71.24 0.44 -3.91 16 16 S -0.17 -8.75 18.55 -56.49 -1.05 -9.80 16 17 C -0.53 -31.28 10.04 67.96 0.68 -30.60 16 18 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 19 C 0.04 2.60 5.50 84.86 0.47 3.06 16 20 N -0.92 -56.40 13.97 21.65 0.30 -56.09 16 21 Si 0.92 45.35 27.74 68.60 1.90 47.25 16 22 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 24 H -0.24 -11.57 6.74 99.48 0.67 -10.90 16 25 C -0.16 -2.84 7.69 31.18 0.24 -2.60 16 26 C -0.12 -1.59 6.25 31.12 0.19 -1.40 16 27 C -0.15 -1.73 7.81 31.18 0.24 -1.49 16 28 C -0.11 -0.75 7.22 31.18 0.23 -0.52 16 29 H 0.05 0.65 7.53 -2.39 -0.02 0.63 16 30 H 0.03 0.49 7.68 -2.39 -0.02 0.47 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.08 0.32 7.53 -2.39 -0.02 0.30 16 33 H 0.10 0.30 8.05 -2.39 -0.02 0.28 16 34 H 0.42 2.15 8.13 -92.71 -0.75 1.40 16 35 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.13 0.64 8.11 -2.39 -0.02 0.62 16 37 H 0.41 7.56 8.70 -92.70 -0.81 6.76 16 38 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 39 H 0.12 4.01 8.14 -2.39 -0.02 3.99 16 40 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 41 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.05 0.98 7.38 -2.39 -0.02 0.96 16 44 H 0.11 0.93 8.10 -2.39 -0.02 0.91 16 45 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 46 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.12 0.25 8.04 -2.39 -0.02 0.23 16 48 H 0.07 0.48 8.09 -2.39 -0.02 0.47 16 Total: -1.00 -81.43 402.50 0.94 -80.48 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -0.63 Total: 15.31 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: 5.13 Total: -7.90 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -4.31 Total: -85.41 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -0.09 Total: -39.94 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.90 Total: 47.25 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.05 Total: -9.80 kcal Total: -81.43 0.94 -80.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703901698.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.293 kcal (2) G-P(sol) polarization free energy of solvation -81.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds