Wall clock time and date at job start Sat Apr 11 2020 06:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46901 * 2 1 4 4 C 1.50700 * 112.91079 * 285.16712 * 3 2 1 5 5 O 1.21280 * 120.00277 * 135.84359 * 4 3 2 6 6 N 1.34773 * 119.99957 * 315.85591 * 4 3 2 7 7 C 1.46501 * 120.00233 * 174.99099 * 6 4 3 8 8 C 1.50698 * 109.47350 * 179.97438 * 7 6 4 9 9 C 1.31001 * 120.00144 * 127.03551 * 8 7 6 10 10 C 1.50698 * 119.99588 * 7.91650 * 9 8 7 11 11 N 1.46508 * 109.46986 * 127.04007 * 10 9 8 12 12 C 1.34770 * 119.99877 * 179.97438 * 11 10 9 13 13 O 1.21281 * 120.00511 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99966 * 179.97438 * 12 11 10 15 15 S 1.81001 * 109.47319 * 179.97438 * 14 12 11 16 16 C 1.76200 * 100.00167 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99828 * 359.97438 * 16 15 14 18 18 C 1.38793 * 120.00010 * 180.02562 * 16 15 14 19 19 N 1.31631 * 120.00036 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99990 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47323 * 60.00099 * 20 18 16 22 22 H 1.48503 * 109.47237 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47261 * 299.99824 * 20 18 16 24 24 C 1.53780 * 113.61486 * 56.42160 * 3 2 1 25 25 C 1.53785 * 87.07966 * 89.11733 * 24 3 2 26 26 C 1.53773 * 87.08440 * 25.43152 * 25 24 3 27 27 H 1.09000 * 109.47227 * 184.56006 * 1 2 3 28 28 H 1.09004 * 109.47153 * 304.55127 * 1 2 3 29 29 H 1.09000 * 109.47536 * 64.55341 * 1 2 3 30 30 H 1.09000 * 109.46624 * 240.00211 * 2 1 3 31 31 H 1.09003 * 109.47089 * 120.00102 * 2 1 3 32 32 H 0.97004 * 119.99962 * 354.98780 * 6 4 3 33 33 H 1.08998 * 109.47138 * 299.99736 * 7 6 4 34 34 H 1.09000 * 109.46992 * 59.99955 * 7 6 4 35 35 H 1.08001 * 119.99936 * 307.03161 * 8 7 6 36 36 H 1.07998 * 119.99762 * 187.91331 * 9 8 7 37 37 H 1.09007 * 109.46951 * 247.02976 * 10 9 8 38 38 H 1.08993 * 109.47667 * 7.03643 * 10 9 8 39 39 H 0.97001 * 119.99662 * 359.97438 * 11 10 9 40 40 H 1.08995 * 109.47249 * 300.00011 * 14 12 11 41 41 H 1.09002 * 109.47271 * 60.00045 * 14 12 11 42 42 H 0.97000 * 120.00053 * 180.02562 * 19 18 16 43 43 H 1.08992 * 113.61481 * 334.56635 * 24 3 2 44 44 H 1.09004 * 113.61393 * 203.66009 * 24 3 2 45 45 H 1.08996 * 113.61579 * 139.98365 * 25 24 3 46 46 H 1.09000 * 113.61292 * 270.88249 * 25 24 3 47 47 H 1.09003 * 113.61557 * 89.11248 * 26 25 24 48 48 H 1.09002 * 113.61654 * 220.02359 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.8931 2.1166 -1.3398 5 8 1.4719 3.2521 -1.4044 6 7 2.2295 1.4577 -2.4662 7 6 1.9846 2.0703 -3.7742 8 6 2.4479 1.1354 -4.8616 9 6 1.6320 0.8025 -5.8308 10 6 0.2961 1.4878 -5.9599 11 7 0.1467 2.0144 -7.3189 12 6 -0.9776 2.6708 -7.6674 13 8 -1.8659 2.8253 -6.8562 14 6 -1.1311 3.2130 -9.0651 15 16 -2.7363 4.0347 -9.2207 16 6 -2.6513 4.5565 -10.9015 17 1 -1.7748 4.3344 -11.4922 18 6 -3.7102 5.2538 -11.4661 19 7 -4.7783 5.5249 -10.7460 20 14 -3.6198 5.8077 -13.2477 21 1 -3.4617 4.6217 -14.1274 22 1 -4.8687 6.5265 -13.6067 23 1 -2.4575 6.7146 -13.4258 24 6 1.5105 2.2830 1.1739 25 6 2.7316 1.7951 1.9713 26 6 3.4385 1.6014 0.6195 27 1 -0.3634 -1.0244 0.0817 28 1 -0.3634 0.5829 0.8464 29 1 -0.3634 0.4415 -0.9279 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.6340 0.5777 -2.4109 33 1 0.9183 2.2637 -3.8909 34 1 2.5340 3.0091 -3.8443 35 1 3.4527 0.7400 -4.8418 36 1 1.9167 0.0369 -6.5374 37 1 -0.5006 0.7717 -5.7582 38 1 0.2376 2.3077 -5.2441 39 1 0.8569 1.8905 -7.9678 40 1 -0.3347 3.9294 -9.2664 41 1 -1.0720 2.3933 -9.7813 42 1 -5.5185 6.0119 -11.1406 43 1 0.5595 1.9282 1.5710 44 1 1.5158 3.3557 0.9802 45 1 3.1836 2.5673 2.5938 46 1 2.5573 0.8638 2.5103 47 1 3.9708 2.4877 0.2742 48 1 4.0438 0.6963 0.5690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704978410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:00 Heat of formation + Delta-G solvation = -43.017251 kcal Electronic energy + Delta-G solvation = -26088.295939 eV Core-core repulsion = 22270.388089 eV Total energy + Delta-G solvation = -3817.907850 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.10743 -39.27284 -38.34562 -36.74979 -34.73074 -33.11984 -32.45802 -32.41004 -29.61783 -27.97120 -26.27554 -25.96567 -25.46544 -24.91057 -23.22647 -21.34220 -20.43979 -19.77184 -18.59341 -17.81191 -17.41548 -16.98782 -16.27284 -16.01569 -15.89089 -15.57076 -15.34072 -14.83949 -14.78505 -14.31418 -14.14376 -14.06654 -13.88719 -13.67108 -13.22611 -13.07964 -13.04247 -12.78465 -12.55132 -12.47122 -12.08804 -11.83065 -11.77369 -11.76457 -11.36391 -11.19226 -11.03292 -11.02668 -10.82120 -10.76036 -10.60750 -10.10003 -9.81780 -9.74961 -9.40245 -9.28077 -9.04761 -8.79574 -8.22452 -6.48588 -6.19983 -3.90780 1.46941 2.35654 2.98169 3.09832 3.11955 3.24575 3.29066 3.34766 3.79923 3.95742 4.03637 4.21785 4.23369 4.29603 4.35168 4.52268 4.58590 4.80067 4.87178 4.89578 5.01645 5.14789 5.14993 5.22029 5.24169 5.30298 5.36079 5.40586 5.44717 5.47684 5.52233 5.54221 5.56157 5.69607 5.76610 5.77682 5.89742 5.92131 5.98898 6.04994 6.12436 6.14523 6.29378 6.59782 7.19196 7.60479 7.69559 7.96060 8.36351 8.60662 9.24984 10.87383 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023647 B = 0.001631 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.786337 B =17167.678212 C =17570.523181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.097 4.097 3 C -0.109 4.109 4 C 0.528 3.472 5 O -0.533 6.533 6 N -0.725 5.725 7 C 0.132 3.868 8 C -0.163 4.163 9 C -0.142 4.142 10 C 0.134 3.866 11 N -0.735 5.735 12 C 0.531 3.469 13 O -0.516 6.516 14 C -0.153 4.153 15 S -0.059 6.059 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.118 4.118 25 C -0.140 4.140 26 C -0.121 4.121 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.399 0.601 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.399 0.601 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.269 0.731 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.883 -15.248 21.984 33.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.134 4.134 3 C -0.112 4.112 4 C 0.314 3.686 5 O -0.409 6.409 6 N -0.377 5.377 7 C 0.009 3.991 8 C -0.182 4.182 9 C -0.162 4.162 10 C 0.011 3.989 11 N -0.390 5.390 12 C 0.317 3.683 13 O -0.390 6.390 14 C -0.304 4.304 15 S 0.167 5.833 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.155 4.155 25 C -0.178 4.178 26 C -0.158 4.158 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.234 0.766 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.233 0.767 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.114 0.886 45 H 0.090 0.910 46 H 0.101 0.899 47 H 0.103 0.897 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 18.859 -14.061 23.298 33.108 hybrid contribution 1.740 -0.407 -2.582 3.140 sum 20.599 -14.467 20.716 32.600 Atomic orbital electron populations 1.21836 0.94871 1.02058 1.02715 1.21325 0.96811 0.92637 1.02657 1.22240 0.99563 0.97146 0.92249 1.20413 0.76701 0.86143 0.85335 1.90729 1.45038 1.18054 1.87082 1.45964 1.64525 1.21811 1.05437 1.20581 1.02240 0.95768 0.80478 1.22853 0.99189 0.99552 0.96593 1.23023 0.95054 0.98596 0.99482 1.20484 0.94919 0.98296 0.85228 1.45938 1.20398 1.59553 1.13107 1.20343 0.81096 0.77046 0.89799 1.90714 1.39954 1.56128 1.52190 1.23529 1.07813 1.03931 0.95082 1.85422 1.12337 1.69619 1.15915 1.22829 1.06343 1.42353 0.96967 0.90968 1.24991 0.94516 0.95181 0.98883 1.70009 1.05866 1.37888 1.36499 0.86221 0.77660 0.78799 0.82791 1.19957 1.20806 1.19944 1.22955 0.98283 1.00783 0.93483 1.22822 0.97156 1.01728 0.96056 1.22914 0.94033 1.02604 0.96289 0.92196 0.91930 0.92490 0.91468 0.90674 0.76598 0.89673 0.90537 0.86023 0.85839 0.90690 0.90236 0.76718 0.89165 0.89183 0.92121 0.90515 0.88608 0.90977 0.89867 0.89672 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 9.64 37.16 0.36 -0.66 16 2 C -0.10 -0.50 5.28 -26.73 -0.14 -0.64 16 3 C -0.11 -0.76 0.86 -154.85 -0.13 -0.90 16 4 C 0.53 5.37 6.71 -10.99 -0.07 5.29 16 5 O -0.53 -7.91 15.89 5.56 0.09 -7.82 16 6 N -0.73 -5.68 5.36 -61.47 -0.33 -6.01 16 7 C 0.13 1.20 5.76 -5.19 -0.03 1.17 16 8 C -0.16 -1.09 9.63 -36.03 -0.35 -1.43 16 9 C -0.14 -1.07 9.63 -36.03 -0.35 -1.42 16 10 C 0.13 1.55 5.76 -5.19 -0.03 1.52 16 11 N -0.74 -9.75 5.55 -61.47 -0.34 -10.09 16 12 C 0.53 10.04 7.85 -10.99 -0.09 9.95 16 13 O -0.52 -11.98 15.86 5.56 0.09 -11.89 16 14 C -0.15 -3.11 6.16 36.01 0.22 -2.88 16 15 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 16 C -0.54 -15.41 9.50 30.94 0.29 -15.12 16 17 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 18 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 20 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 24 C -0.12 -0.88 6.82 -25.92 -0.18 -1.06 16 25 C -0.14 -0.74 7.73 -25.92 -0.20 -0.94 16 26 C -0.12 -0.67 7.17 -25.92 -0.19 -0.85 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.41 6.12 -51.93 -0.32 0.09 16 29 H 0.06 0.47 8.01 -51.93 -0.42 0.06 16 30 H 0.07 0.28 6.80 -51.93 -0.35 -0.08 16 31 H 0.07 0.30 7.37 -51.93 -0.38 -0.09 16 32 H 0.40 1.99 7.23 -40.82 -0.29 1.69 16 33 H 0.09 0.96 5.31 -51.93 -0.28 0.68 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 36 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.04 5.31 -51.93 -0.28 0.76 16 39 H 0.40 4.03 8.46 -40.82 -0.35 3.68 16 40 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 41 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 42 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.08 0.54 6.12 -51.93 -0.32 0.22 16 44 H 0.10 0.92 7.39 -51.93 -0.38 0.53 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.08 0.34 7.70 -51.93 -0.40 -0.06 16 47 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 48 H 0.07 0.29 8.10 -51.93 -0.42 -0.13 16 LS Contribution 404.38 15.07 6.09 6.09 Total: -1.00 -37.12 404.38 -9.40 -46.52 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.53 Total: 2.15 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -0.97 Total: -5.96 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.06 Total: -41.76 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: 0.18 Total: -19.71 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.12 -9.40 -46.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704978410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.507 kcal (2) G-P(sol) polarization free energy of solvation -37.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds