Wall clock time and date at job start Sat Apr 11 2020 06:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46901 * 2 1 4 4 C 1.50700 * 112.91079 * 285.16712 * 3 2 1 5 5 O 1.21280 * 120.00277 * 135.84359 * 4 3 2 6 6 N 1.34773 * 119.99957 * 315.85591 * 4 3 2 7 7 C 1.46501 * 120.00233 * 174.99099 * 6 4 3 8 8 C 1.50698 * 109.47350 * 179.97438 * 7 6 4 9 9 C 1.31001 * 120.00144 * 127.03551 * 8 7 6 10 10 C 1.50698 * 119.99588 * 7.91650 * 9 8 7 11 11 N 1.46508 * 109.46986 * 127.04007 * 10 9 8 12 12 C 1.34770 * 119.99877 * 179.97438 * 11 10 9 13 13 O 1.21281 * 120.00511 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99966 * 179.97438 * 12 11 10 15 15 S 1.81001 * 109.47319 * 179.97438 * 14 12 11 16 16 C 1.76200 * 100.00167 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99828 * 359.97438 * 16 15 14 18 18 C 1.38793 * 120.00010 * 180.02562 * 16 15 14 19 19 N 1.31631 * 120.00036 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99990 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47323 * 60.00099 * 20 18 16 22 22 H 1.48503 * 109.47237 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47261 * 299.99824 * 20 18 16 24 24 C 1.53780 * 113.61486 * 56.42160 * 3 2 1 25 25 C 1.53785 * 87.07966 * 89.11733 * 24 3 2 26 26 C 1.53773 * 87.08440 * 25.43152 * 25 24 3 27 27 H 1.09000 * 109.47227 * 184.56006 * 1 2 3 28 28 H 1.09004 * 109.47153 * 304.55127 * 1 2 3 29 29 H 1.09000 * 109.47536 * 64.55341 * 1 2 3 30 30 H 1.09000 * 109.46624 * 240.00211 * 2 1 3 31 31 H 1.09003 * 109.47089 * 120.00102 * 2 1 3 32 32 H 0.97004 * 119.99962 * 354.98780 * 6 4 3 33 33 H 1.08998 * 109.47138 * 299.99736 * 7 6 4 34 34 H 1.09000 * 109.46992 * 59.99955 * 7 6 4 35 35 H 1.08001 * 119.99936 * 307.03161 * 8 7 6 36 36 H 1.07998 * 119.99762 * 187.91331 * 9 8 7 37 37 H 1.09007 * 109.46951 * 247.02976 * 10 9 8 38 38 H 1.08993 * 109.47667 * 7.03643 * 10 9 8 39 39 H 0.97001 * 119.99662 * 359.97438 * 11 10 9 40 40 H 1.08995 * 109.47249 * 300.00011 * 14 12 11 41 41 H 1.09002 * 109.47271 * 60.00045 * 14 12 11 42 42 H 0.97000 * 120.00053 * 180.02562 * 19 18 16 43 43 H 1.08992 * 113.61481 * 334.56635 * 24 3 2 44 44 H 1.09004 * 113.61393 * 203.66009 * 24 3 2 45 45 H 1.08996 * 113.61579 * 139.98365 * 25 24 3 46 46 H 1.09000 * 113.61292 * 270.88249 * 25 24 3 47 47 H 1.09003 * 113.61557 * 89.11248 * 26 25 24 48 48 H 1.09002 * 113.61654 * 220.02359 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.8931 2.1166 -1.3398 5 8 1.4719 3.2521 -1.4044 6 7 2.2295 1.4577 -2.4662 7 6 1.9846 2.0703 -3.7742 8 6 2.4479 1.1354 -4.8616 9 6 1.6320 0.8025 -5.8308 10 6 0.2961 1.4878 -5.9599 11 7 0.1467 2.0144 -7.3189 12 6 -0.9776 2.6708 -7.6674 13 8 -1.8659 2.8253 -6.8562 14 6 -1.1311 3.2130 -9.0651 15 16 -2.7363 4.0347 -9.2207 16 6 -2.6513 4.5565 -10.9015 17 1 -1.7748 4.3344 -11.4922 18 6 -3.7102 5.2538 -11.4661 19 7 -4.7783 5.5249 -10.7460 20 14 -3.6198 5.8077 -13.2477 21 1 -3.4617 4.6217 -14.1274 22 1 -4.8687 6.5265 -13.6067 23 1 -2.4575 6.7146 -13.4258 24 6 1.5105 2.2830 1.1739 25 6 2.7316 1.7951 1.9713 26 6 3.4385 1.6014 0.6195 27 1 -0.3634 -1.0244 0.0817 28 1 -0.3634 0.5829 0.8464 29 1 -0.3634 0.4415 -0.9279 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.6340 0.5777 -2.4109 33 1 0.9183 2.2637 -3.8909 34 1 2.5340 3.0091 -3.8443 35 1 3.4527 0.7400 -4.8418 36 1 1.9167 0.0369 -6.5374 37 1 -0.5006 0.7717 -5.7582 38 1 0.2376 2.3077 -5.2441 39 1 0.8569 1.8905 -7.9678 40 1 -0.3347 3.9294 -9.2664 41 1 -1.0720 2.3933 -9.7813 42 1 -5.5185 6.0119 -11.1406 43 1 0.5595 1.9282 1.5710 44 1 1.5158 3.3557 0.9802 45 1 3.1836 2.5673 2.5938 46 1 2.5573 0.8638 2.5103 47 1 3.9708 2.4877 0.2742 48 1 4.0438 0.6963 0.5690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704978410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:59 Heat of formation + Delta-G solvation = -69.887650 kcal Electronic energy + Delta-G solvation = -26089.461127 eV Core-core repulsion = 22270.388089 eV Total energy + Delta-G solvation = -3819.073038 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.77545 -40.68300 -39.07304 -37.67103 -35.79094 -34.59225 -34.01494 -33.06814 -31.09013 -28.76367 -27.72566 -26.96126 -26.54036 -25.74667 -23.73115 -22.08477 -21.81493 -20.56686 -19.84654 -19.10524 -18.18468 -17.92227 -17.64195 -16.95374 -16.87912 -16.75773 -16.56619 -16.17470 -16.03823 -15.64337 -14.96829 -14.83991 -14.71288 -14.66706 -14.52929 -14.35917 -14.04049 -13.70107 -13.52593 -13.28524 -13.17985 -13.14395 -12.86465 -12.64656 -12.62961 -12.27944 -12.25927 -11.98125 -11.90302 -11.74808 -11.31470 -11.13423 -11.12058 -11.10590 -10.74455 -10.42522 -10.29743 -10.28801 -9.83081 -8.68427 -8.34904 -6.13890 0.80037 1.28371 1.43927 1.47682 1.56197 1.57744 1.58008 2.25851 2.27807 2.46395 2.99095 3.32108 3.41129 3.52133 3.60353 3.73455 3.86674 3.90181 3.98849 4.01974 4.08411 4.28084 4.33093 4.37677 4.43812 4.49309 4.53623 4.63462 4.67672 4.76996 4.83459 4.85467 4.92250 4.95822 5.03408 5.09852 5.17621 5.28454 5.30150 5.36000 5.40703 5.40878 5.44628 5.51798 5.69975 6.19047 6.48578 6.52792 7.05902 7.21562 7.22931 8.74169 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023647 B = 0.001631 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.786337 B =17167.678212 C =17570.523181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.091 4.091 3 C -0.107 4.107 4 C 0.520 3.480 5 O -0.592 6.592 6 N -0.709 5.709 7 C 0.128 3.872 8 C -0.140 4.140 9 C -0.140 4.140 10 C 0.130 3.870 11 N -0.706 5.706 12 C 0.531 3.469 13 O -0.569 6.569 14 C -0.128 4.128 15 S -0.156 6.156 16 C -0.547 4.547 17 H 0.085 0.915 18 C 0.012 3.988 19 N -0.912 5.912 20 Si 1.000 3.000 21 H -0.260 1.260 22 H -0.279 1.279 23 H -0.262 1.262 24 C -0.132 4.132 25 C -0.128 4.128 26 C -0.113 4.113 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.029 0.971 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.417 0.583 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.160 0.840 36 H 0.157 0.843 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.419 0.581 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.271 0.729 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.105 0.895 47 H 0.070 0.930 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.470 -18.032 21.211 37.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.128 4.128 3 C -0.110 4.110 4 C 0.308 3.692 5 O -0.472 6.472 6 N -0.361 5.361 7 C 0.004 3.996 8 C -0.159 4.159 9 C -0.159 4.159 10 C 0.007 3.993 11 N -0.361 5.361 12 C 0.317 3.683 13 O -0.448 6.448 14 C -0.279 4.279 15 S 0.071 5.929 16 C -0.695 4.695 17 H 0.103 0.897 18 C -0.193 4.193 19 N -0.549 5.549 20 Si 0.822 3.178 21 H -0.185 1.185 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.170 4.170 25 C -0.165 4.165 26 C -0.151 4.151 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.255 0.745 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.177 0.823 36 H 0.174 0.826 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.257 0.743 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.124 0.876 47 H 0.089 0.911 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 22.534 -16.918 22.514 36.068 hybrid contribution 0.680 0.433 -2.227 2.369 sum 23.214 -16.485 20.287 34.960 Atomic orbital electron populations 1.21853 0.96259 1.02522 1.01051 1.21371 0.95490 0.91277 1.04709 1.22354 1.00956 0.97870 0.89814 1.21131 0.75536 0.85591 0.86954 1.90701 1.47754 1.20752 1.87983 1.45834 1.63549 1.22238 1.04519 1.20498 1.00463 0.96443 0.82163 1.22946 1.00371 0.97792 0.94745 1.22932 0.92616 0.99426 1.00964 1.20568 0.97546 0.97767 0.83391 1.45657 1.18882 1.57188 1.14356 1.20158 0.81984 0.77393 0.88806 1.90703 1.42226 1.58535 1.53296 1.23364 1.03345 1.04373 0.96824 1.85643 1.18809 1.71393 1.17079 1.23181 1.06991 1.42451 0.96862 0.89724 1.26163 0.93863 0.94992 1.04238 1.70188 1.06855 1.38880 1.38931 0.84977 0.78005 0.78727 0.76111 1.18485 1.20446 1.18659 1.22972 0.99752 0.99217 0.95033 1.22823 0.95194 1.02593 0.95911 1.22899 0.93162 1.03297 0.95736 0.90776 0.92448 0.95219 0.89817 0.88099 0.74473 0.92581 0.91969 0.82257 0.82599 0.91741 0.92247 0.74309 0.87125 0.86786 0.92002 0.90429 0.91744 0.90832 0.87619 0.91118 0.87780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.64 71.98 0.69 -1.28 16 2 C -0.09 -0.73 5.28 30.59 0.16 -0.57 16 3 C -0.11 -1.42 0.86 -52.40 -0.05 -1.47 16 4 C 0.52 10.97 6.71 87.66 0.59 11.56 16 5 O -0.59 -19.21 15.89 -3.03 -0.05 -19.25 16 6 N -0.71 -10.62 5.36 -466.80 -2.50 -13.12 16 7 C 0.13 2.31 5.76 85.63 0.49 2.80 16 8 C -0.14 -1.44 9.63 25.64 0.25 -1.20 16 9 C -0.14 -1.69 9.63 25.64 0.25 -1.44 16 10 C 0.13 2.94 5.76 85.63 0.49 3.43 16 11 N -0.71 -17.82 5.55 -466.78 -2.59 -20.41 16 12 C 0.53 20.16 7.85 87.66 0.69 20.84 16 13 O -0.57 -27.64 15.86 -3.03 -0.05 -27.69 16 14 C -0.13 -5.13 6.16 71.24 0.44 -4.69 16 15 S -0.16 -8.88 20.57 -56.49 -1.16 -10.04 16 16 C -0.55 -31.61 9.50 67.95 0.65 -30.96 16 17 H 0.08 4.49 7.80 -2.91 -0.02 4.47 16 18 C 0.01 0.70 5.49 84.86 0.47 1.16 16 19 N -0.91 -56.93 13.22 21.65 0.29 -56.65 16 20 Si 1.00 43.95 29.55 68.60 2.03 45.98 16 21 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 22 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 24 C -0.13 -2.06 6.82 31.12 0.21 -1.85 16 25 C -0.13 -1.13 7.73 31.12 0.24 -0.89 16 26 C -0.11 -1.04 7.17 31.12 0.22 -0.81 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.75 6.12 -2.39 -0.01 0.74 16 29 H 0.03 0.51 8.01 -2.39 -0.02 0.50 16 30 H 0.08 0.41 6.80 -2.39 -0.02 0.39 16 31 H 0.10 0.37 7.37 -2.39 -0.02 0.36 16 32 H 0.42 3.09 7.23 -92.71 -0.67 2.42 16 33 H 0.06 1.37 5.31 -2.39 -0.01 1.36 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 35 H 0.16 0.62 8.06 -2.91 -0.02 0.60 16 36 H 0.16 1.02 8.06 -2.91 -0.02 0.99 16 37 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.06 1.63 5.31 -2.39 -0.01 1.62 16 39 H 0.42 7.21 8.46 -92.71 -0.78 6.42 16 40 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 41 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 42 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 43 H 0.08 1.14 6.12 -2.39 -0.01 1.13 16 44 H 0.06 1.40 7.39 -2.39 -0.02 1.39 16 45 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.11 0.50 7.70 -2.39 -0.02 0.48 16 47 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 48 H 0.10 0.39 8.10 -2.39 -0.02 0.37 16 Total: -1.00 -88.19 404.38 1.28 -86.91 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -0.47 Total: 19.65 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 5.79 Total: -5.37 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -4.81 Total: -90.18 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -0.10 Total: -46.95 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.16 Total: -10.04 kcal Total: -88.19 1.28 -86.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704978410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.018 kcal (2) G-P(sol) polarization free energy of solvation -88.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds