Wall clock time and date at job start Sat Apr 11 2020 06:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47396 * 2 1 4 4 C 1.50695 * 112.84619 * 298.25211 * 3 2 1 5 5 O 1.21279 * 120.00249 * 113.82827 * 4 3 2 6 6 N 1.34773 * 120.00124 * 293.82144 * 4 3 2 7 7 C 1.47588 * 134.49340 * 5.23585 * 6 4 3 8 8 C 1.53940 * 86.11840 * 204.64225 * 7 6 4 9 9 C 1.47579 * 134.49545 * 185.23726 * 6 4 3 10 10 H 1.09007 * 113.87164 * 269.67428 * 9 6 4 11 11 C 1.52997 * 113.77055 * 41.05715 * 9 6 4 12 12 N 1.46509 * 109.47171 * 274.14306 * 11 9 6 13 13 C 1.34777 * 119.99831 * 173.56666 * 12 11 9 14 14 O 1.21277 * 119.99995 * 0.02562 * 13 12 11 15 15 C 1.50696 * 119.99514 * 179.97438 * 13 12 11 16 16 S 1.81005 * 109.47020 * 179.97438 * 15 13 12 17 17 C 1.76198 * 100.00058 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99988 * 359.97438 * 17 16 15 19 19 C 1.38803 * 119.99860 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00144 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99742 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47398 * 59.99497 * 21 19 17 23 23 H 1.48494 * 109.46730 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.47061 * 299.99501 * 21 19 17 25 25 C 1.53782 * 113.61182 * 69.44354 * 3 2 1 26 26 C 1.53959 * 87.01884 * 89.23104 * 25 3 2 27 27 C 1.53773 * 113.61400 * 167.05329 * 3 2 1 28 28 H 1.08995 * 109.47281 * 65.10123 * 1 2 3 29 29 H 1.08997 * 109.47266 * 185.10525 * 1 2 3 30 30 H 1.09005 * 109.46978 * 305.09785 * 1 2 3 31 31 H 1.09001 * 109.47469 * 239.99880 * 2 1 3 32 32 H 1.09002 * 109.47609 * 120.00348 * 2 1 3 33 33 H 1.08997 * 113.76696 * 90.33623 * 7 6 4 34 34 H 1.09005 * 113.86890 * 318.95673 * 7 6 4 35 35 H 1.09002 * 113.73900 * 222.05092 * 8 7 6 36 36 H 1.08998 * 113.74907 * 90.73801 * 8 7 6 37 37 H 1.08997 * 109.47299 * 154.14360 * 11 9 6 38 38 H 1.09000 * 109.47229 * 34.13916 * 11 9 6 39 39 H 0.96993 * 119.99622 * 353.56716 * 12 11 9 40 40 H 1.08998 * 109.47387 * 60.00108 * 15 13 12 41 41 H 1.09001 * 109.47235 * 300.00157 * 15 13 12 42 42 H 0.96998 * 120.00285 * 180.02562 * 20 19 17 43 43 H 1.08997 * 113.61697 * 203.74846 * 25 3 2 44 44 H 1.09001 * 113.61329 * 334.65618 * 25 3 2 45 45 H 1.09000 * 113.53806 * 270.81291 * 26 25 3 46 46 H 1.08998 * 113.66701 * 139.93196 * 26 25 3 47 47 H 1.09004 * 113.61962 * 25.34795 * 27 3 2 48 48 H 1.09008 * 113.61546 * 156.16929 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6153 2.2133 -1.2233 5 8 0.8504 3.1483 -1.1157 6 7 2.0856 1.8637 -2.4370 7 6 2.9245 0.7597 -2.9425 8 6 3.2936 1.7082 -4.0974 9 6 1.9687 2.4312 -3.7943 10 1 1.1197 2.0484 -4.3608 11 6 2.0750 3.9569 -3.8361 12 7 0.7559 4.5453 -3.5912 13 6 0.6286 5.8798 -3.4523 14 8 1.6059 6.5936 -3.5306 15 6 -0.7284 6.4851 -3.2010 16 16 -0.5707 8.2828 -3.0609 17 6 -2.2547 8.7165 -2.7769 18 1 -3.0112 7.9468 -2.7372 19 6 -2.6091 10.0475 -2.6053 20 7 -1.6871 10.9856 -2.6541 21 14 -4.3943 10.5072 -2.3035 22 1 -4.8731 9.8456 -1.0632 23 1 -4.5075 11.9803 -2.1536 24 1 -5.2215 10.0612 -3.4534 25 6 1.7789 2.1882 1.3194 26 6 3.1406 1.6526 1.7982 27 6 3.5400 1.5655 0.3157 28 1 -0.3633 0.4326 -0.9321 29 1 -0.3633 -1.0235 0.0914 30 1 -0.3633 0.5909 0.8408 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.3560 -0.1154 -3.2573 34 1 3.7639 0.5105 -2.2932 35 1 3.3157 1.2235 -5.0734 36 1 4.1786 2.3139 -3.9022 37 1 2.4359 4.2692 -4.8161 38 1 2.7714 4.2938 -3.0682 39 1 -0.0258 3.9744 -3.5290 40 1 -1.1395 6.0835 -2.2748 41 1 -1.3939 6.2418 -4.0293 42 1 -1.9347 11.9157 -2.5338 43 1 1.7502 3.2723 1.2099 44 1 0.9320 1.7959 1.8823 45 1 3.0778 0.6825 2.2912 46 1 3.7220 2.3798 2.3651 47 1 4.1128 0.6713 0.0696 48 1 3.9940 2.4784 -0.0700 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001705187714.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:06 Heat of formation + Delta-G solvation = -25.624480 kcal Electronic energy + Delta-G solvation = -27947.629973 eV Core-core repulsion = 24130.476330 eV Total energy + Delta-G solvation = -3817.153643 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.23227 -39.59157 -38.61502 -37.18242 -34.20872 -32.79383 -32.34276 -30.49722 -29.71073 -27.61731 -26.55750 -25.87575 -25.38755 -23.39560 -23.34461 -22.19178 -20.32081 -19.75731 -18.46448 -17.71386 -17.11201 -16.56368 -16.48843 -15.95818 -15.75518 -15.20807 -15.02749 -14.72577 -14.62651 -14.31258 -14.05322 -13.83097 -13.46594 -13.04653 -13.01005 -12.78917 -12.71186 -12.56835 -12.52981 -12.33106 -11.98872 -11.87625 -11.75157 -11.58860 -11.55564 -11.40538 -11.18831 -10.97053 -10.95372 -10.68768 -10.66846 -10.50422 -9.72797 -9.54267 -9.21466 -8.97876 -8.95096 -8.65517 -8.12366 -6.38746 -6.12888 -3.82027 2.44122 2.59520 3.16510 3.29406 3.31413 3.33432 3.40020 3.80431 4.03467 4.05019 4.09434 4.28767 4.29442 4.41934 4.49467 4.56473 4.67464 4.85262 4.88227 4.92151 4.97686 4.99949 5.06861 5.21782 5.26266 5.31535 5.33587 5.34245 5.44922 5.50408 5.53424 5.54964 5.60670 5.64613 5.72850 5.79108 5.86874 5.90092 5.97434 6.01173 6.07991 6.16107 6.32407 6.79763 7.50102 7.68052 7.90952 8.09947 8.44139 8.81736 9.32112 10.94628 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014106 B = 0.002642 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.558666 B =10595.634678 C =11544.612246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.093 4.093 3 C -0.100 4.100 4 C 0.548 3.452 5 O -0.514 6.514 6 N -0.642 5.642 7 C 0.101 3.899 8 C -0.144 4.144 9 C 0.122 3.878 10 H 0.098 0.902 11 C 0.125 3.875 12 N -0.724 5.724 13 C 0.537 3.463 14 O -0.526 6.526 15 C -0.150 4.150 16 S -0.061 6.061 17 C -0.534 4.534 18 H 0.071 0.929 19 C 0.073 3.927 20 N -0.869 5.869 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.113 4.113 26 C -0.141 4.141 27 C -0.123 4.123 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.398 0.602 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.268 0.732 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.387 -30.087 2.071 32.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.130 4.130 3 C -0.103 4.103 4 C 0.337 3.663 5 O -0.388 6.388 6 N -0.380 5.380 7 C -0.022 4.022 8 C -0.182 4.182 9 C 0.019 3.981 10 H 0.115 0.885 11 C 0.000 4.000 12 N -0.378 5.378 13 C 0.324 3.676 14 O -0.401 6.401 15 C -0.301 4.301 16 S 0.165 5.835 17 C -0.682 4.682 18 H 0.089 0.911 19 C -0.136 4.136 20 N -0.505 5.505 21 Si 0.744 3.256 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.151 4.151 26 C -0.179 4.179 27 C -0.160 4.160 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.232 0.768 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.111 0.889 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.558 -28.112 2.235 30.871 hybrid contribution -2.706 -0.925 0.305 2.876 sum 9.853 -29.037 2.539 30.768 Atomic orbital electron populations 1.21766 0.95029 1.01673 1.02627 1.21273 0.96549 0.92653 1.02539 1.22155 0.98016 0.96615 0.93524 1.20135 0.79367 0.84219 0.82600 1.90795 1.33552 1.29269 1.85151 1.50214 1.53369 1.28633 1.05786 1.23124 0.93723 0.91339 0.93964 1.23567 0.97535 0.97879 0.99227 1.23097 0.98348 0.94390 0.82266 0.88458 1.21361 0.86802 0.89996 1.01863 1.45759 1.09331 1.07387 1.75319 1.20181 0.90943 0.81352 0.75157 1.90673 1.39960 1.60398 1.49110 1.23491 0.96340 1.05693 1.04532 1.85317 1.12358 0.91836 1.93966 1.22848 0.93267 0.95273 1.56800 0.91055 1.24981 0.98527 0.95304 0.94785 1.70012 1.33022 1.00723 1.46696 0.86236 0.83050 0.77380 0.78897 1.19959 1.20845 1.19974 1.22907 0.97505 1.01179 0.93521 1.22865 0.97462 1.01589 0.95955 1.22918 0.93674 1.02525 0.96916 0.92816 0.92434 0.92011 0.91532 0.90791 0.89780 0.89902 0.89271 0.88415 0.90696 0.91106 0.76831 0.89196 0.89553 0.92226 0.88879 0.90790 0.89988 0.90924 0.90927 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.58 37.16 0.36 -0.86 16 2 C -0.09 -0.62 5.24 -26.73 -0.14 -0.76 16 3 C -0.10 -0.89 0.56 -154.85 -0.09 -0.98 16 4 C 0.55 6.52 5.99 -10.99 -0.07 6.45 16 5 O -0.51 -8.52 15.49 5.56 0.09 -8.43 16 6 N -0.64 -5.80 3.49 -171.18 -0.60 -6.40 16 7 C 0.10 0.50 7.41 -2.97 -0.02 0.47 16 8 C -0.14 -0.72 7.86 -25.81 -0.20 -0.92 16 9 C 0.12 1.04 4.27 -66.86 -0.29 0.75 16 10 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 11 C 0.12 1.60 5.25 -4.04 -0.02 1.57 16 12 N -0.72 -11.49 4.54 -60.29 -0.27 -11.77 16 13 C 0.54 11.37 7.85 -10.99 -0.09 11.28 16 14 O -0.53 -13.06 15.84 5.56 0.09 -12.97 16 15 C -0.15 -3.40 6.16 36.00 0.22 -3.18 16 16 S -0.06 -1.78 20.57 -107.50 -2.21 -3.99 16 17 C -0.53 -16.03 9.50 30.94 0.29 -15.74 16 18 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 19 C 0.07 2.17 5.49 -17.43 -0.10 2.08 16 20 N -0.87 -27.18 13.22 55.49 0.73 -26.45 16 21 Si 0.92 22.28 29.55 -169.99 -5.02 17.26 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 C -0.11 -1.12 6.72 -25.82 -0.17 -1.30 16 26 C -0.14 -1.04 7.74 -25.82 -0.20 -1.24 16 27 C -0.12 -0.91 6.88 -25.92 -0.18 -1.09 16 28 H 0.05 0.51 7.64 -51.93 -0.40 0.12 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.54 6.88 -51.93 -0.36 0.19 16 31 H 0.07 0.37 6.94 -51.93 -0.36 0.01 16 32 H 0.07 0.41 7.31 -51.93 -0.38 0.03 16 33 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.32 7.78 -51.93 -0.40 -0.09 16 35 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.10 0.52 8.10 -51.93 -0.42 0.10 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.07 1.08 8.12 -51.93 -0.42 0.66 16 39 H 0.40 5.64 8.45 -40.82 -0.34 5.29 16 40 H 0.09 2.00 8.14 -51.92 -0.42 1.58 16 41 H 0.09 1.80 8.14 -51.92 -0.42 1.37 16 42 H 0.27 7.78 8.31 -40.82 -0.34 7.44 16 43 H 0.09 1.18 7.72 -51.93 -0.40 0.78 16 44 H 0.07 0.69 6.97 -51.93 -0.36 0.33 16 45 H 0.08 0.48 7.60 -51.93 -0.39 0.09 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 48 H 0.08 0.75 8.09 -51.92 -0.42 0.33 16 LS Contribution 401.44 15.07 6.05 6.05 Total: -1.00 -38.42 401.44 -9.84 -48.26 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -8.01 Total: 1.89 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -0.69 Total: -3.46 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: -0.14 Total: -44.61 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: 0.17 Total: -21.40 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -2.21 Total: -3.99 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -38.42 -9.84 -48.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705187714.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.640 kcal (2) G-P(sol) polarization free energy of solvation -38.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds