Wall clock time and date at job start Sat Apr 11 2020 06:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47185 * 2 1 4 4 C 1.53000 * 109.47176 * 119.99403 * 2 1 3 5 5 C 1.50701 * 109.47614 * 239.99575 * 2 1 3 6 6 C 1.32991 * 119.99394 * 0.02562 * 5 2 1 7 7 C 1.47103 * 119.99631 * 179.97438 * 6 5 2 8 8 O 1.21612 * 120.00099 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00002 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00089 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47182 * 184.93477 * 10 9 7 12 12 H 1.08997 * 112.96762 * 308.98998 * 11 10 9 13 13 C 1.53943 * 113.77091 * 177.30865 * 11 10 9 14 14 C 1.53947 * 86.29222 * 222.09625 * 13 11 10 15 15 N 1.47582 * 113.76731 * 80.66479 * 11 10 9 16 16 C 1.34773 * 134.49729 * 318.93583 * 15 11 10 17 17 O 1.21287 * 119.99904 * 5.08584 * 16 15 11 18 18 C 1.50702 * 120.00312 * 185.08571 * 16 15 11 19 19 S 1.81004 * 109.47065 * 179.97438 * 18 16 15 20 20 C 1.76199 * 99.99728 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00243 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99852 * 179.97438 * 20 19 18 23 23 N 1.31629 * 119.99901 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99893 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47112 * 89.99803 * 24 22 20 26 26 H 1.48497 * 109.47176 * 209.99679 * 24 22 20 27 27 H 1.48496 * 109.46950 * 329.99781 * 24 22 20 28 28 H 1.08998 * 109.47030 * 60.00157 * 1 2 3 29 29 H 1.08998 * 109.47589 * 300.00417 * 1 2 3 30 30 H 1.08997 * 109.47270 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47197 * 59.99343 * 3 2 1 32 32 H 1.08994 * 109.47435 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46632 * 299.99307 * 3 2 1 34 34 H 1.09000 * 109.47157 * 59.99869 * 4 2 1 35 35 H 1.08995 * 109.47466 * 180.02562 * 4 2 1 36 36 H 1.09004 * 109.47427 * 300.00628 * 4 2 1 37 37 H 1.07998 * 119.99966 * 180.02562 * 5 2 1 38 38 H 1.07998 * 120.00641 * 359.97438 * 6 5 2 39 39 H 0.97004 * 119.99949 * 0.02562 * 9 7 6 40 40 H 1.08999 * 109.47163 * 304.93489 * 10 9 7 41 41 H 1.08998 * 109.46932 * 64.93579 * 10 9 7 42 42 H 1.09000 * 113.74153 * 336.43710 * 13 11 10 43 43 H 1.08996 * 113.74318 * 107.74555 * 13 11 10 44 44 H 1.08999 * 113.77191 * 137.91273 * 14 13 11 45 45 H 1.09003 * 113.76202 * 269.19252 * 14 13 11 46 46 H 1.09001 * 109.47119 * 300.00012 * 18 16 15 47 47 H 1.09000 * 109.46666 * 59.99810 * 18 16 15 48 48 H 0.96998 * 119.99647 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0324 -0.7105 -1.2304 6 6 1.1682 -1.2155 -2.1060 7 6 1.6586 -1.9085 -3.3073 8 8 2.8542 -2.0192 -3.4999 9 7 0.7828 -2.4208 -4.1944 10 6 1.2712 -3.1115 -5.3906 11 6 0.0863 -3.4841 -6.2839 12 1 -0.7025 -4.0105 -5.7466 13 6 0.4940 -4.1597 -7.6057 14 6 -0.5769 -3.2767 -8.2715 15 7 -0.4037 -2.3692 -7.1176 16 6 -0.6093 -1.0536 -6.9096 17 8 -0.2843 -0.5482 -5.8561 18 6 -1.2428 -0.2105 -7.9861 19 16 -1.3834 1.4993 -7.4088 20 6 -2.1326 2.2386 -8.8218 21 1 -2.3590 1.6372 -9.6899 22 6 -2.4329 3.5938 -8.8189 23 7 -2.9930 4.1460 -9.8743 24 14 -2.0420 4.6338 -7.3172 25 1 -0.6714 5.1912 -7.4443 26 1 -3.0212 5.7457 -7.2167 27 1 -2.1226 3.7913 -6.0971 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.6766 1.9564 0.8899 32 1 3.1299 1.4426 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 -1.7488 1.2494 35 1 3.1299 -0.7207 1.2496 36 1 1.6766 -0.2073 2.1393 37 1 3.0942 -0.8095 -1.4010 38 1 0.1064 -1.1169 -1.9352 39 1 -0.1709 -2.3322 -4.0410 40 1 1.9471 -2.4552 -5.9386 41 1 1.8028 -4.0164 -5.0960 42 1 1.5114 -3.9286 -7.9211 43 1 0.2684 -5.2255 -7.6416 44 1 -0.2623 -2.8458 -9.2220 45 1 -1.5614 -3.7420 -8.3206 46 1 -0.6245 -0.2418 -8.8832 47 1 -2.2352 -0.5991 -8.2150 48 1 -3.2025 5.0931 -9.8724 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001705189676.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:13 Heat of formation + Delta-G solvation = -33.700655 kcal Electronic energy + Delta-G solvation = -27144.991136 eV Core-core repulsion = 23327.487284 eV Total energy + Delta-G solvation = -3817.503852 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.52012 -39.42474 -37.83529 -37.48423 -34.52894 -32.46051 -31.73365 -30.83269 -28.58751 -28.21932 -27.56134 -27.46364 -25.62810 -24.36560 -22.60237 -22.09702 -20.32798 -19.02965 -18.36229 -17.77632 -17.33579 -16.70941 -16.30414 -15.89643 -15.35435 -15.02548 -15.01165 -14.79474 -14.52805 -14.35117 -14.21920 -13.92501 -13.61516 -13.33690 -12.86506 -12.69461 -12.58921 -12.48432 -12.36134 -12.23049 -12.19461 -12.05991 -11.89778 -11.66077 -11.30439 -11.26456 -11.24745 -11.14901 -11.02846 -10.90461 -10.62498 -9.87644 -9.80374 -9.47758 -9.42105 -9.02422 -8.92206 -8.70556 -8.52198 -6.93911 -6.31001 -4.02691 1.41714 2.50214 2.91571 3.04855 3.26885 3.31788 3.47917 3.48467 3.55735 4.12836 4.30681 4.43539 4.48094 4.56526 4.57504 4.72867 4.75008 4.88080 5.00380 5.02727 5.08138 5.11141 5.15429 5.23052 5.28492 5.36058 5.37600 5.42198 5.49803 5.54574 5.63900 5.66092 5.66945 5.72291 5.80525 5.88893 5.90456 5.99914 6.01249 6.05710 6.08701 6.31343 6.42064 6.51501 7.61792 7.70918 7.92146 8.35090 8.39444 8.42626 9.15187 10.78317 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007832 B = 0.003498 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3574.431982 B = 8001.759295 C =11153.726259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.048 4.048 3 C -0.140 4.140 4 C -0.137 4.137 5 C -0.060 4.060 6 C -0.211 4.211 7 C 0.552 3.448 8 O -0.558 6.558 9 N -0.707 5.707 10 C 0.123 3.877 11 C 0.121 3.879 12 H 0.097 0.903 13 C -0.142 4.142 14 C 0.102 3.898 15 N -0.648 5.648 16 C 0.552 3.448 17 O -0.507 6.507 18 C -0.116 4.116 19 S -0.141 6.141 20 C -0.521 4.521 21 H 0.087 0.913 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.236 1.236 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.403 0.597 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.093 0.907 47 H 0.094 0.906 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.251 -18.326 14.855 24.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.048 4.048 3 C -0.197 4.197 4 C -0.194 4.194 5 C -0.079 4.079 6 C -0.231 4.231 7 C 0.341 3.659 8 O -0.439 6.439 9 N -0.357 5.357 10 C -0.001 4.001 11 C 0.017 3.983 12 H 0.115 0.885 13 C -0.180 4.180 14 C -0.021 4.021 15 N -0.388 5.388 16 C 0.341 3.659 17 O -0.380 6.380 18 C -0.267 4.267 19 S 0.086 5.914 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.160 1.160 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.237 0.763 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.115 0.885 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.111 0.889 47 H 0.112 0.888 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.451 -17.251 16.201 24.811 hybrid contribution -0.997 0.184 -1.017 1.436 sum 6.454 -17.067 15.183 23.737 Atomic orbital electron populations 1.22015 0.93978 1.02114 1.02511 1.19766 0.96083 0.95640 0.93274 1.21842 1.01274 0.94201 1.02411 1.21821 1.01269 1.00222 0.96098 1.23640 1.00162 0.91374 0.92757 1.22728 1.01058 1.03818 0.95545 1.18518 0.85839 0.78070 0.83488 1.90746 1.15941 1.59608 1.77587 1.45604 1.10097 1.57582 1.22381 1.21442 0.95619 0.97205 0.85865 1.23045 0.95422 0.85997 0.93810 0.88529 1.23539 1.00555 0.99699 0.94242 1.23156 0.98930 0.88439 0.91580 1.50273 1.67619 1.05729 1.15219 1.20016 0.77412 0.79922 0.88566 1.90717 1.49396 1.70621 1.27268 1.23223 1.03263 1.00041 1.00139 1.84770 1.81406 0.99642 1.25615 1.22309 1.46073 0.97522 1.00965 0.89447 1.24711 0.93402 0.96860 0.96316 1.69938 1.40434 1.12725 1.28596 0.86733 0.79193 0.81370 0.84525 1.19199 1.19918 1.15993 0.91689 0.92246 0.92234 0.92091 0.92295 0.91993 0.92451 0.92312 0.92127 0.85804 0.85227 0.76279 0.90706 0.90671 0.88511 0.89351 0.89636 0.89597 0.88886 0.88751 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 7.13 37.16 0.26 -1.05 16 2 C -0.05 -0.44 0.99 -155.66 -0.15 -0.59 16 3 C -0.14 -1.28 8.46 37.16 0.31 -0.96 16 4 C -0.14 -1.04 8.46 37.16 0.31 -0.73 16 5 C -0.06 -0.69 8.33 -36.13 -0.30 -1.00 16 6 C -0.21 -2.68 9.00 -37.81 -0.34 -3.02 16 7 C 0.55 8.40 7.76 -12.67 -0.10 8.30 16 8 O -0.56 -10.27 16.22 5.27 0.09 -10.18 16 9 N -0.71 -9.34 4.18 -61.49 -0.26 -9.59 16 10 C 0.12 1.45 5.22 -4.04 -0.02 1.43 16 11 C 0.12 1.13 4.29 -66.86 -0.29 0.84 16 12 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 13 C -0.14 -0.94 7.86 -25.79 -0.20 -1.14 16 14 C 0.10 0.85 8.63 -2.85 -0.02 0.83 16 15 N -0.65 -8.13 3.50 -170.16 -0.60 -8.72 16 16 C 0.55 9.69 7.99 -10.99 -0.09 9.61 16 17 O -0.51 -10.37 14.40 5.55 0.08 -10.29 16 18 C -0.12 -2.27 5.92 36.01 0.21 -2.06 16 19 S -0.14 -3.56 18.55 -107.50 -1.99 -5.56 16 20 C -0.52 -15.04 10.04 30.94 0.31 -14.72 16 21 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 22 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 23 N -0.88 -26.61 13.97 55.49 0.78 -25.83 16 24 Si 0.86 21.87 27.74 -169.99 -4.72 17.15 16 25 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 28 H 0.06 0.65 7.50 -51.93 -0.39 0.26 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.48 7.50 -51.93 -0.39 0.09 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.12 1.57 7.49 -52.49 -0.39 1.17 16 38 H 0.13 1.44 5.74 -52.49 -0.30 1.14 16 39 H 0.40 4.91 8.11 -40.82 -0.33 4.58 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.10 0.66 8.10 -51.93 -0.42 0.24 16 43 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 47 H 0.09 1.74 8.14 -51.92 -0.42 1.31 16 48 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 407.98 15.07 6.15 6.15 Total: -1.00 -36.22 407.98 -8.81 -45.04 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -8.14 Total: 3.40 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -0.20 Total: -1.55 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -0.08 Total: -44.15 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: 0.17 Total: -20.48 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.72 Total: 17.15 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.22 -8.81 -45.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705189676.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.336 kcal (2) G-P(sol) polarization free energy of solvation -36.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds