Wall clock time and date at job start Sat Apr 11 2020 06:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47185 * 2 1 4 4 C 1.53000 * 109.47176 * 119.99403 * 2 1 3 5 5 C 1.50701 * 109.47614 * 239.99575 * 2 1 3 6 6 C 1.32991 * 119.99394 * 0.02562 * 5 2 1 7 7 C 1.47103 * 119.99631 * 179.97438 * 6 5 2 8 8 O 1.21612 * 120.00099 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00002 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00089 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47182 * 184.93477 * 10 9 7 12 12 H 1.08997 * 112.96762 * 308.98998 * 11 10 9 13 13 C 1.53943 * 113.77091 * 177.30865 * 11 10 9 14 14 C 1.53947 * 86.29222 * 222.09625 * 13 11 10 15 15 N 1.47582 * 113.76731 * 80.66479 * 11 10 9 16 16 C 1.34773 * 134.49729 * 318.93583 * 15 11 10 17 17 O 1.21287 * 119.99904 * 5.08584 * 16 15 11 18 18 C 1.50702 * 120.00312 * 185.08571 * 16 15 11 19 19 S 1.81004 * 109.47065 * 179.97438 * 18 16 15 20 20 C 1.76199 * 99.99728 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00243 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99852 * 179.97438 * 20 19 18 23 23 N 1.31629 * 119.99901 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99893 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47112 * 89.99803 * 24 22 20 26 26 H 1.48497 * 109.47176 * 209.99679 * 24 22 20 27 27 H 1.48496 * 109.46950 * 329.99781 * 24 22 20 28 28 H 1.08998 * 109.47030 * 60.00157 * 1 2 3 29 29 H 1.08998 * 109.47589 * 300.00417 * 1 2 3 30 30 H 1.08997 * 109.47270 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47197 * 59.99343 * 3 2 1 32 32 H 1.08994 * 109.47435 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46632 * 299.99307 * 3 2 1 34 34 H 1.09000 * 109.47157 * 59.99869 * 4 2 1 35 35 H 1.08995 * 109.47466 * 180.02562 * 4 2 1 36 36 H 1.09004 * 109.47427 * 300.00628 * 4 2 1 37 37 H 1.07998 * 119.99966 * 180.02562 * 5 2 1 38 38 H 1.07998 * 120.00641 * 359.97438 * 6 5 2 39 39 H 0.97004 * 119.99949 * 0.02562 * 9 7 6 40 40 H 1.08999 * 109.47163 * 304.93489 * 10 9 7 41 41 H 1.08998 * 109.46932 * 64.93579 * 10 9 7 42 42 H 1.09000 * 113.74153 * 336.43710 * 13 11 10 43 43 H 1.08996 * 113.74318 * 107.74555 * 13 11 10 44 44 H 1.08999 * 113.77191 * 137.91273 * 14 13 11 45 45 H 1.09003 * 113.76202 * 269.19252 * 14 13 11 46 46 H 1.09001 * 109.47119 * 300.00012 * 18 16 15 47 47 H 1.09000 * 109.46666 * 59.99810 * 18 16 15 48 48 H 0.96998 * 119.99647 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0324 -0.7105 -1.2304 6 6 1.1682 -1.2155 -2.1060 7 6 1.6586 -1.9085 -3.3073 8 8 2.8542 -2.0192 -3.4999 9 7 0.7828 -2.4208 -4.1944 10 6 1.2712 -3.1115 -5.3906 11 6 0.0863 -3.4841 -6.2839 12 1 -0.7025 -4.0105 -5.7466 13 6 0.4940 -4.1597 -7.6057 14 6 -0.5769 -3.2767 -8.2715 15 7 -0.4037 -2.3692 -7.1176 16 6 -0.6093 -1.0536 -6.9096 17 8 -0.2843 -0.5482 -5.8561 18 6 -1.2428 -0.2105 -7.9861 19 16 -1.3834 1.4993 -7.4088 20 6 -2.1326 2.2386 -8.8218 21 1 -2.3590 1.6372 -9.6899 22 6 -2.4329 3.5938 -8.8189 23 7 -2.9930 4.1460 -9.8743 24 14 -2.0420 4.6338 -7.3172 25 1 -0.6714 5.1912 -7.4443 26 1 -3.0212 5.7457 -7.2167 27 1 -2.1226 3.7913 -6.0971 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.6766 1.9564 0.8899 32 1 3.1299 1.4426 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 -1.7488 1.2494 35 1 3.1299 -0.7207 1.2496 36 1 1.6766 -0.2073 2.1393 37 1 3.0942 -0.8095 -1.4010 38 1 0.1064 -1.1169 -1.9352 39 1 -0.1709 -2.3322 -4.0410 40 1 1.9471 -2.4552 -5.9386 41 1 1.8028 -4.0164 -5.0960 42 1 1.5114 -3.9286 -7.9211 43 1 0.2684 -5.2255 -7.6416 44 1 -0.2623 -2.8458 -9.2220 45 1 -1.5614 -3.7420 -8.3206 46 1 -0.6245 -0.2418 -8.8832 47 1 -2.2352 -0.5991 -8.2150 48 1 -3.2025 5.0931 -9.8724 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001705189676.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:12 Heat of formation + Delta-G solvation = -57.819280 kcal Electronic energy + Delta-G solvation = -27146.036998 eV Core-core repulsion = 23327.487284 eV Total energy + Delta-G solvation = -3818.549714 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.51748 -40.53424 -38.79860 -38.56945 -35.63238 -34.70709 -32.70416 -32.09625 -29.60121 -29.34744 -28.25683 -28.12563 -27.86953 -25.24094 -23.48006 -23.03961 -21.37595 -20.29548 -19.51486 -19.21082 -18.46271 -17.87265 -17.30622 -17.21361 -16.97875 -16.50507 -16.13300 -15.93946 -15.70293 -15.54532 -15.08249 -15.04752 -14.93994 -14.56251 -14.47521 -13.86136 -13.49150 -13.41883 -13.24964 -13.21761 -13.17802 -13.07210 -13.02163 -12.94037 -12.65318 -12.58246 -12.34265 -12.04564 -11.97546 -11.96699 -11.88850 -11.64618 -11.20722 -10.96592 -10.74793 -10.56630 -10.48479 -9.97920 -9.72012 -9.02621 -8.54955 -6.25538 0.40085 0.93266 1.28285 1.40433 1.48389 1.59062 1.91836 2.21300 2.24159 2.41934 2.65259 2.83309 3.38819 3.58353 3.62364 3.73867 3.81618 4.01911 4.04714 4.11998 4.16127 4.21231 4.24403 4.38238 4.40739 4.41676 4.47739 4.70273 4.71925 4.75406 4.76234 4.87133 4.97250 4.99387 5.00343 5.03305 5.09705 5.20282 5.26345 5.32682 5.39028 5.40029 5.48830 5.55069 5.67424 6.07631 6.54373 6.60466 6.90233 7.12186 7.24318 8.57710 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007832 B = 0.003498 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3574.431982 B = 8001.759295 C =11153.726259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C -0.141 4.141 4 C -0.133 4.133 5 C -0.050 4.050 6 C -0.226 4.226 7 C 0.541 3.459 8 O -0.601 6.601 9 N -0.700 5.700 10 C 0.121 3.879 11 C 0.123 3.877 12 H 0.127 0.873 13 C -0.121 4.121 14 C 0.096 3.904 15 N -0.649 5.649 16 C 0.549 3.451 17 O -0.547 6.547 18 C -0.102 4.102 19 S -0.172 6.172 20 C -0.529 4.529 21 H 0.060 0.940 22 C 0.046 3.954 23 N -0.917 5.917 24 Si 0.914 3.086 25 H -0.265 1.265 26 H -0.256 1.256 27 H -0.236 1.236 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.043 0.957 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.145 0.855 39 H 0.408 0.592 40 H 0.039 0.961 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.130 0.870 44 H 0.086 0.914 45 H 0.113 0.887 46 H 0.099 0.901 47 H 0.106 0.894 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.828 -20.405 16.259 26.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.047 4.047 3 C -0.198 4.198 4 C -0.191 4.191 5 C -0.070 4.070 6 C -0.247 4.247 7 C 0.331 3.669 8 O -0.485 6.485 9 N -0.349 5.349 10 C -0.003 4.003 11 C 0.020 3.980 12 H 0.145 0.855 13 C -0.159 4.159 14 C -0.025 4.025 15 N -0.387 5.387 16 C 0.337 3.663 17 O -0.424 6.424 18 C -0.253 4.253 19 S 0.055 5.945 20 C -0.677 4.677 21 H 0.078 0.922 22 C -0.159 4.159 23 N -0.555 5.555 24 Si 0.736 3.264 25 H -0.190 1.190 26 H -0.180 1.180 27 H -0.160 1.160 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.128 0.872 38 H 0.163 0.837 39 H 0.244 0.756 40 H 0.057 0.943 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.148 0.852 44 H 0.104 0.896 45 H 0.131 0.869 46 H 0.117 0.883 47 H 0.125 0.875 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.996 -19.395 17.561 27.083 hybrid contribution -0.824 0.648 -1.545 1.867 sum 6.171 -18.747 16.016 25.418 Atomic orbital electron populations 1.22009 0.93429 1.02617 1.02465 1.19835 0.96531 0.95510 0.92781 1.21858 1.01455 0.94069 1.02393 1.21805 1.01373 1.00294 0.95588 1.23843 0.99408 0.90375 0.93421 1.22788 1.01956 1.04806 0.95138 1.18997 0.85535 0.77959 0.84387 1.90710 1.17565 1.61508 1.78721 1.45646 1.10149 1.56802 1.22270 1.21544 0.96425 0.96874 0.85493 1.23433 0.95207 0.84660 0.94689 0.85515 1.23498 0.99786 1.01501 0.91098 1.23573 1.01119 0.87425 0.90414 1.50383 1.65683 1.04749 1.17876 1.19589 0.77645 0.81723 0.87308 1.90698 1.51397 1.72009 1.28320 1.23176 1.04555 0.96397 1.01132 1.84666 1.80988 1.04337 1.24533 1.22455 1.46019 0.97797 1.01421 0.92168 1.25556 0.93297 0.98077 0.98979 1.70012 1.41531 1.13504 1.30411 0.85873 0.79334 0.80085 0.81097 1.19011 1.18047 1.16036 0.93281 0.90713 0.91489 0.90265 0.92105 0.93817 0.92225 0.92212 0.90477 0.87241 0.83708 0.75648 0.94252 0.88810 0.88870 0.85194 0.89562 0.86879 0.88293 0.87527 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 7.13 71.98 0.51 -1.90 16 2 C -0.05 -0.82 0.99 -52.93 -0.05 -0.87 16 3 C -0.14 -2.46 8.46 71.98 0.61 -1.85 16 4 C -0.13 -1.79 8.46 71.98 0.61 -1.18 16 5 C -0.05 -1.19 8.33 24.52 0.20 -0.99 16 6 C -0.23 -5.84 9.00 23.43 0.21 -5.63 16 7 C 0.54 16.90 7.76 86.57 0.67 17.57 16 8 O -0.60 -23.01 16.22 -4.07 -0.07 -23.07 16 9 N -0.70 -18.35 4.18 -466.71 -1.95 -20.30 16 10 C 0.12 2.73 5.22 86.38 0.45 3.18 16 11 C 0.12 1.92 4.29 45.09 0.19 2.12 16 12 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 13 C -0.12 -1.10 7.86 31.25 0.25 -0.85 16 14 C 0.10 1.26 8.63 86.44 0.75 2.00 16 15 N -0.65 -14.91 3.50 -810.67 -2.84 -17.75 16 16 C 0.55 18.95 7.99 87.66 0.70 19.65 16 17 O -0.55 -22.55 14.40 -3.05 -0.04 -22.59 16 18 C -0.10 -3.95 5.92 71.24 0.42 -3.52 16 19 S -0.17 -8.80 18.55 -56.49 -1.05 -9.84 16 20 C -0.53 -31.18 10.04 67.96 0.68 -30.50 16 21 H 0.06 3.75 8.03 -2.91 -0.02 3.72 16 22 C 0.05 2.75 5.50 84.86 0.47 3.21 16 23 N -0.92 -56.20 13.97 21.65 0.30 -55.90 16 24 Si 0.91 45.50 27.74 68.60 1.90 47.40 16 25 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 26 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 27 H -0.24 -11.71 6.74 99.48 0.67 -11.04 16 28 H 0.05 0.96 7.50 -2.39 -0.02 0.94 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.98 7.50 -2.39 -0.02 0.96 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.04 0.91 8.14 -2.38 -0.02 0.90 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.11 2.89 7.49 -2.91 -0.02 2.87 16 38 H 0.15 3.20 5.74 -2.91 -0.02 3.18 16 39 H 0.41 9.69 8.11 -92.71 -0.75 8.93 16 40 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.09 0.99 8.10 -2.39 -0.02 0.97 16 43 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 44 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 47 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 48 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -82.35 407.98 3.08 -79.26 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.15 Total: 22.35 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 6.67 Total: 0.44 kcal Atomic # 7 Polarization: -89.46 SS G_CDS: -4.49 Total: -93.95 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -0.11 Total: -45.66 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.90 Total: 47.40 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.05 Total: -9.84 kcal Total: -82.35 3.08 -79.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705189676.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.443 kcal (2) G-P(sol) polarization free energy of solvation -82.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds