Wall clock time and date at job start Sat Apr 11 2020 06:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46954 * 2 1 4 4 C 1.52998 * 109.46973 * 239.99827 * 2 1 3 5 5 C 1.50701 * 109.46824 * 119.99905 * 2 1 3 6 6 C 1.32991 * 120.00233 * 48.66248 * 5 2 1 7 7 C 1.47106 * 119.99960 * 8.82749 * 6 5 2 8 8 O 1.21618 * 120.00013 * 6.96022 * 7 6 5 9 9 N 1.34772 * 119.99964 * 186.96172 * 7 6 5 10 10 C 1.46509 * 119.99927 * 179.72773 * 9 7 6 11 11 C 1.52996 * 109.46961 * 175.06029 * 10 9 7 12 12 H 1.09001 * 112.74147 * 314.45828 * 11 10 9 13 13 C 1.53502 * 113.46777 * 85.27949 * 11 10 9 14 14 C 1.53497 * 83.34504 * 140.84757 * 13 11 10 15 15 N 1.47065 * 113.46738 * 183.71220 * 11 10 9 16 16 C 1.34777 * 136.05832 * 38.13175 * 15 11 10 17 17 O 1.21284 * 119.99945 * 4.82706 * 16 15 11 18 18 C 1.50696 * 120.00302 * 184.83432 * 16 15 11 19 19 S 1.81008 * 109.47091 * 180.02562 * 18 16 15 20 20 C 1.76206 * 99.99644 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99835 * 359.97438 * 20 19 18 22 22 C 1.38795 * 119.99577 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00585 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99884 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.46955 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46814 * 120.00024 * 24 22 20 27 27 H 1.48497 * 109.47385 * 240.00003 * 24 22 20 28 28 H 1.09003 * 109.47456 * 334.90742 * 1 2 3 29 29 H 1.08998 * 109.46989 * 94.90604 * 1 2 3 30 30 H 1.09005 * 109.47438 * 214.90112 * 1 2 3 31 31 H 1.08997 * 109.46517 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.46934 * 300.00009 * 3 2 1 33 33 H 1.08997 * 109.47191 * 60.00071 * 3 2 1 34 34 H 1.09002 * 109.47093 * 268.92311 * 4 2 1 35 35 H 1.08998 * 109.47605 * 28.92816 * 4 2 1 36 36 H 1.09002 * 109.46491 * 148.92911 * 4 2 1 37 37 H 1.08003 * 119.99987 * 228.66021 * 5 2 1 38 38 H 1.08005 * 120.00487 * 188.82690 * 6 5 2 39 39 H 0.96996 * 120.00348 * 359.97438 * 9 7 6 40 40 H 1.09000 * 109.46607 * 295.05752 * 10 9 7 41 41 H 1.08991 * 109.46896 * 55.05844 * 10 9 7 42 42 H 1.09003 * 114.20343 * 254.42956 * 13 11 10 43 43 H 1.08997 * 114.20872 * 27.25374 * 13 11 10 44 44 H 1.09002 * 113.46500 * 219.15553 * 14 13 11 45 45 H 1.08996 * 113.46961 * 88.70978 * 14 13 11 46 46 H 1.09006 * 109.46806 * 299.99654 * 18 16 15 47 47 H 1.08994 * 109.47270 * 59.99679 * 18 16 15 48 48 H 0.96991 * 120.00876 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.5367 -1.8995 1.5607 7 6 0.6457 -2.6093 0.6299 8 8 0.4626 -2.1713 -0.4898 9 7 0.0322 -3.7448 1.0180 10 6 -0.8599 -4.4484 0.0930 11 6 -1.3245 -5.7593 0.7305 12 1 -0.5093 -6.3139 1.1953 13 6 -2.5507 -5.5962 1.6394 14 6 -2.9688 -6.9346 1.0151 15 7 -2.1586 -6.5803 -0.1600 16 6 -2.1734 -6.8777 -1.4745 17 8 -1.2844 -6.4788 -2.1966 18 6 -3.2948 -7.7058 -2.0470 19 16 -3.0319 -7.9314 -3.8237 20 6 -4.4457 -8.9051 -4.2209 21 1 -5.1490 -9.1766 -3.4475 22 6 -4.6554 -9.3231 -5.5277 23 7 -3.7986 -8.9918 -6.4703 24 14 -6.1539 -10.3560 -5.9488 25 1 -6.9554 -10.5892 -4.7206 26 1 -6.9827 -9.6399 -6.9516 27 1 -5.7153 -11.6594 -6.5090 28 1 -0.3634 0.9307 0.4358 29 1 -0.3633 -0.0879 -1.0239 30 1 -0.3634 -0.8428 0.5880 31 1 3.1299 1.4424 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 2.1793 -1.7792 -1.0265 35 1 1.3131 -0.6120 -2.0541 36 1 2.9910 -0.2865 -1.5569 37 1 2.7947 -0.2538 1.8442 38 1 1.7884 -2.3443 2.5122 39 1 0.1784 -4.0943 1.9109 40 1 -1.7258 -3.8226 -0.1232 41 1 -0.3267 -4.6635 -0.8329 42 1 -2.3276 -5.6504 2.7050 43 1 -3.1955 -4.7584 1.3740 44 1 -4.0360 -7.0000 0.8028 45 1 -2.5922 -7.8026 1.5563 46 1 -3.3147 -8.6791 -1.5566 47 1 -4.2439 -7.1961 -1.8816 48 1 -3.9449 -9.2842 -7.3835 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001705189681.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:23 Heat of formation + Delta-G solvation = 7.216177 kcal Electronic energy + Delta-G solvation = -27037.921293 eV Core-core repulsion = 23222.191728 eV Total energy + Delta-G solvation = -3815.729565 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.84496 -40.26287 -37.64398 -37.04925 -34.60278 -32.43213 -32.04151 -30.71663 -28.63340 -28.12224 -27.35276 -27.23577 -25.48358 -24.25763 -22.63080 -22.07160 -20.94095 -19.28469 -18.49351 -17.72412 -17.07870 -16.66224 -16.40845 -15.69559 -15.56752 -15.18969 -14.84059 -14.80486 -14.37279 -14.20739 -14.09881 -13.89836 -13.81130 -13.59678 -12.97497 -12.80650 -12.67101 -12.48496 -12.37731 -12.27807 -11.98946 -11.87550 -11.65668 -11.20887 -11.07247 -11.06567 -11.02161 -10.96348 -10.76911 -10.75943 -10.65605 -9.81624 -9.61722 -9.50374 -9.38574 -9.07742 -8.93765 -8.67431 -8.23462 -6.50630 -6.21750 -3.92671 1.15749 2.56182 2.99296 3.15554 3.17403 3.21478 3.28680 3.32621 3.58876 4.05860 4.19726 4.40341 4.51088 4.56932 4.67337 4.80054 4.86216 4.93486 4.94156 5.13337 5.14695 5.15315 5.20555 5.30623 5.44348 5.49277 5.51520 5.59918 5.65410 5.72367 5.79278 5.81956 5.84135 5.85125 5.94371 5.95991 6.01172 6.07263 6.13006 6.17023 6.29297 6.35924 6.40731 6.56852 7.37915 7.59581 7.81432 8.16606 8.35196 8.51965 9.23392 10.85722 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017051 B = 0.002126 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.765798 B =13169.552937 C =14341.240651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.043 4.043 3 C -0.142 4.142 4 C -0.115 4.115 5 C -0.046 4.046 6 C -0.226 4.226 7 C 0.530 3.470 8 O -0.510 6.510 9 N -0.725 5.725 10 C 0.114 3.886 11 C 0.123 3.877 12 H 0.094 0.906 13 C -0.152 4.152 14 C 0.101 3.899 15 N -0.647 5.647 16 C 0.561 3.439 17 O -0.508 6.508 18 C -0.144 4.144 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.032 0.968 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.031 0.969 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.397 0.603 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.444 14.619 24.231 29.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.043 4.043 3 C -0.199 4.199 4 C -0.171 4.171 5 C -0.066 4.066 6 C -0.247 4.247 7 C 0.319 3.681 8 O -0.388 6.388 9 N -0.378 5.378 10 C -0.010 4.010 11 C 0.019 3.981 12 H 0.111 0.889 13 C -0.190 4.190 14 C -0.022 4.022 15 N -0.387 5.387 16 C 0.351 3.649 17 O -0.382 6.382 18 C -0.294 4.294 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.746 3.254 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.206 1.206 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.230 0.770 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.116 0.884 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.653 15.427 21.854 28.439 hybrid contribution -1.862 -1.541 1.146 2.675 sum 7.791 13.886 23.001 27.974 Atomic orbital electron populations 1.22179 0.92860 0.99783 1.02907 1.19727 0.96581 0.94237 0.93770 1.22010 1.00605 0.95474 1.01809 1.21962 0.98821 1.00974 0.95381 1.23898 0.93817 0.93597 0.95287 1.22539 1.03483 0.98151 1.00521 1.18491 0.80848 0.80684 0.88057 1.90991 1.61168 1.65382 1.21227 1.45789 1.48070 1.26525 1.17378 1.21536 0.94306 0.91363 0.93802 1.22750 0.95148 0.91382 0.88839 0.88870 1.23590 0.97438 0.98555 0.99401 1.22882 0.97661 0.97231 0.84456 1.49756 1.33043 1.50449 1.05472 1.20009 0.86754 0.79312 0.78858 1.90731 1.37770 1.52186 1.57463 1.23466 0.98831 1.01141 1.05983 1.85447 1.34620 1.69060 0.94171 1.22892 1.10284 1.38085 0.97026 0.90877 1.25002 0.97325 0.96096 0.95217 1.70024 1.35115 1.43491 1.01580 0.86106 0.81342 0.79493 0.78484 1.19625 1.20540 1.20559 0.94895 0.91878 0.92112 0.92763 0.92270 0.92869 0.91063 0.92152 0.95024 0.85849 0.85599 0.76975 0.91065 0.89271 0.89282 0.88446 0.90012 0.89757 0.89382 0.89258 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 7.58 37.16 0.28 -1.03 16 2 C -0.04 -0.41 0.75 -155.66 -0.12 -0.53 16 3 C -0.14 -1.08 8.04 37.16 0.30 -0.78 16 4 C -0.11 -1.33 7.54 37.16 0.28 -1.05 16 5 C -0.05 -0.36 8.52 -36.13 -0.31 -0.67 16 6 C -0.23 -1.77 9.48 -37.80 -0.36 -2.12 16 7 C 0.53 5.72 5.77 -12.66 -0.07 5.65 16 8 O -0.51 -7.23 8.63 5.26 0.05 -7.18 16 9 N -0.73 -6.59 5.55 -61.49 -0.34 -6.93 16 10 C 0.11 1.39 5.46 -4.04 -0.02 1.36 16 11 C 0.12 1.25 4.07 -72.39 -0.29 0.96 16 12 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 13 C -0.15 -1.05 8.02 -26.21 -0.21 -1.26 16 14 C 0.10 0.90 8.42 -8.50 -0.07 0.83 16 15 N -0.65 -8.97 3.57 -177.43 -0.63 -9.60 16 16 C 0.56 10.91 7.97 -10.99 -0.09 10.82 16 17 O -0.51 -11.95 15.47 5.55 0.09 -11.87 16 18 C -0.14 -2.99 5.99 36.00 0.22 -2.77 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 20 C -0.53 -15.38 9.50 30.94 0.29 -15.08 16 21 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.41 13.22 55.49 0.73 -25.67 16 24 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H 0.03 0.31 7.75 -51.93 -0.40 -0.09 16 29 H 0.06 0.80 7.00 -51.93 -0.36 0.44 16 30 H 0.06 0.70 4.61 -51.93 -0.24 0.46 16 31 H 0.05 0.36 8.11 -51.93 -0.42 -0.06 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.35 8.12 -51.93 -0.42 -0.07 16 34 H 0.07 0.95 5.50 -51.93 -0.29 0.66 16 35 H 0.06 0.79 7.17 -51.93 -0.37 0.42 16 36 H 0.03 0.32 7.80 -51.93 -0.41 -0.08 16 37 H 0.12 0.65 8.01 -52.48 -0.42 0.23 16 38 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 39 H 0.40 2.22 8.46 -40.82 -0.35 1.87 16 40 H 0.07 0.95 7.90 -51.93 -0.41 0.54 16 41 H 0.09 1.49 7.16 -51.93 -0.37 1.12 16 42 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.10 0.72 7.95 -51.93 -0.41 0.31 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 47 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 48 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 397.20 15.07 5.99 5.99 Total: -1.00 -36.53 397.20 -9.42 -45.95 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.80 Total: 0.31 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -0.27 Total: -3.66 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: -0.24 Total: -42.21 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.13 Total: -19.05 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.53 -9.42 -45.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705189681.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.170 kcal (2) G-P(sol) polarization free energy of solvation -36.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds