Wall clock time and date at job start Sat Apr 11 2020 06:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46954 * 2 1 4 4 C 1.52998 * 109.46973 * 239.99827 * 2 1 3 5 5 C 1.50701 * 109.46824 * 119.99905 * 2 1 3 6 6 C 1.32991 * 120.00233 * 48.66248 * 5 2 1 7 7 C 1.47106 * 119.99960 * 8.82749 * 6 5 2 8 8 O 1.21618 * 120.00013 * 6.96022 * 7 6 5 9 9 N 1.34772 * 119.99964 * 186.96172 * 7 6 5 10 10 C 1.46509 * 119.99927 * 179.72773 * 9 7 6 11 11 C 1.52996 * 109.46961 * 175.06029 * 10 9 7 12 12 H 1.09001 * 112.74147 * 314.45828 * 11 10 9 13 13 C 1.53502 * 113.46777 * 85.27949 * 11 10 9 14 14 C 1.53497 * 83.34504 * 140.84757 * 13 11 10 15 15 N 1.47065 * 113.46738 * 183.71220 * 11 10 9 16 16 C 1.34777 * 136.05832 * 38.13175 * 15 11 10 17 17 O 1.21284 * 119.99945 * 4.82706 * 16 15 11 18 18 C 1.50696 * 120.00302 * 184.83432 * 16 15 11 19 19 S 1.81008 * 109.47091 * 180.02562 * 18 16 15 20 20 C 1.76206 * 99.99644 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99835 * 359.97438 * 20 19 18 22 22 C 1.38795 * 119.99577 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00585 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99884 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.46955 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46814 * 120.00024 * 24 22 20 27 27 H 1.48497 * 109.47385 * 240.00003 * 24 22 20 28 28 H 1.09003 * 109.47456 * 334.90742 * 1 2 3 29 29 H 1.08998 * 109.46989 * 94.90604 * 1 2 3 30 30 H 1.09005 * 109.47438 * 214.90112 * 1 2 3 31 31 H 1.08997 * 109.46517 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.46934 * 300.00009 * 3 2 1 33 33 H 1.08997 * 109.47191 * 60.00071 * 3 2 1 34 34 H 1.09002 * 109.47093 * 268.92311 * 4 2 1 35 35 H 1.08998 * 109.47605 * 28.92816 * 4 2 1 36 36 H 1.09002 * 109.46491 * 148.92911 * 4 2 1 37 37 H 1.08003 * 119.99987 * 228.66021 * 5 2 1 38 38 H 1.08005 * 120.00487 * 188.82690 * 6 5 2 39 39 H 0.96996 * 120.00348 * 359.97438 * 9 7 6 40 40 H 1.09000 * 109.46607 * 295.05752 * 10 9 7 41 41 H 1.08991 * 109.46896 * 55.05844 * 10 9 7 42 42 H 1.09003 * 114.20343 * 254.42956 * 13 11 10 43 43 H 1.08997 * 114.20872 * 27.25374 * 13 11 10 44 44 H 1.09002 * 113.46500 * 219.15553 * 14 13 11 45 45 H 1.08996 * 113.46961 * 88.70978 * 14 13 11 46 46 H 1.09006 * 109.46806 * 299.99654 * 18 16 15 47 47 H 1.08994 * 109.47270 * 59.99679 * 18 16 15 48 48 H 0.96991 * 120.00876 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.5367 -1.8995 1.5607 7 6 0.6457 -2.6093 0.6299 8 8 0.4626 -2.1713 -0.4898 9 7 0.0322 -3.7448 1.0180 10 6 -0.8599 -4.4484 0.0930 11 6 -1.3245 -5.7593 0.7305 12 1 -0.5093 -6.3139 1.1953 13 6 -2.5507 -5.5962 1.6394 14 6 -2.9688 -6.9346 1.0151 15 7 -2.1586 -6.5803 -0.1600 16 6 -2.1734 -6.8777 -1.4745 17 8 -1.2844 -6.4788 -2.1966 18 6 -3.2948 -7.7058 -2.0470 19 16 -3.0319 -7.9314 -3.8237 20 6 -4.4457 -8.9051 -4.2209 21 1 -5.1490 -9.1766 -3.4475 22 6 -4.6554 -9.3231 -5.5277 23 7 -3.7986 -8.9918 -6.4703 24 14 -6.1539 -10.3560 -5.9488 25 1 -6.9554 -10.5892 -4.7206 26 1 -6.9827 -9.6399 -6.9516 27 1 -5.7153 -11.6594 -6.5090 28 1 -0.3634 0.9307 0.4358 29 1 -0.3633 -0.0879 -1.0239 30 1 -0.3634 -0.8428 0.5880 31 1 3.1299 1.4424 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 2.1793 -1.7792 -1.0265 35 1 1.3131 -0.6120 -2.0541 36 1 2.9910 -0.2865 -1.5569 37 1 2.7947 -0.2538 1.8442 38 1 1.7884 -2.3443 2.5122 39 1 0.1784 -4.0943 1.9109 40 1 -1.7258 -3.8226 -0.1232 41 1 -0.3267 -4.6635 -0.8329 42 1 -2.3276 -5.6504 2.7050 43 1 -3.1955 -4.7584 1.3740 44 1 -4.0360 -7.0000 0.8028 45 1 -2.5922 -7.8026 1.5563 46 1 -3.3147 -8.6791 -1.5566 47 1 -4.2439 -7.1961 -1.8816 48 1 -3.9449 -9.2842 -7.3835 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001705189681.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:22 Heat of formation + Delta-G solvation = -18.954223 kcal Electronic energy + Delta-G solvation = -27039.056127 eV Core-core repulsion = 23222.191728 eV Total energy + Delta-G solvation = -3816.864399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.77339 -41.23106 -38.99929 -37.88860 -35.53345 -34.62268 -32.78588 -32.07499 -29.50202 -29.45178 -28.18634 -28.06596 -27.68466 -25.02990 -23.44102 -23.09471 -21.75854 -20.39833 -19.76834 -19.24814 -18.05461 -17.79195 -17.36607 -16.92930 -16.81594 -16.62628 -16.35863 -15.93259 -15.73407 -15.30730 -15.11131 -14.90658 -14.76022 -14.56052 -14.36772 -13.96467 -13.84703 -13.48715 -13.41547 -13.18628 -13.14548 -13.03800 -12.93581 -12.67577 -12.62636 -12.41744 -12.06731 -11.83596 -11.80773 -11.74756 -11.59312 -11.46759 -11.19106 -10.86962 -10.42888 -10.32147 -10.27190 -9.85899 -9.78898 -8.72658 -8.37833 -6.17525 0.49055 1.16446 1.39498 1.39850 1.52908 1.54146 1.84629 2.23964 2.37072 2.44510 2.96184 3.18199 3.33723 3.66118 3.71727 3.76801 3.88880 4.00275 4.03395 4.12952 4.19799 4.22129 4.40876 4.45048 4.47115 4.59273 4.64052 4.70410 4.74087 4.76998 4.81336 4.91547 4.96517 4.97764 5.01428 5.17912 5.20463 5.26453 5.29926 5.34936 5.38161 5.47460 5.50584 5.56421 5.73240 6.16617 6.60152 6.67464 7.02814 7.08802 7.39660 8.71873 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017051 B = 0.002126 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.765798 B =13169.552937 C =14341.240651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.048 4.048 3 C -0.137 4.137 4 C -0.108 4.108 5 C -0.045 4.045 6 C -0.223 4.223 7 C 0.516 3.484 8 O -0.554 6.554 9 N -0.708 5.708 10 C 0.126 3.874 11 C 0.120 3.880 12 H 0.120 0.880 13 C -0.123 4.123 14 C 0.094 3.906 15 N -0.651 5.651 16 C 0.555 3.445 17 O -0.567 6.567 18 C -0.116 4.116 19 S -0.156 6.156 20 C -0.544 4.544 21 H 0.084 0.916 22 C 0.011 3.989 23 N -0.912 5.912 24 Si 1.003 2.997 25 H -0.255 1.255 26 H -0.274 1.274 27 H -0.273 1.273 28 H 0.046 0.954 29 H 0.029 0.971 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.029 0.971 36 H 0.043 0.957 37 H 0.161 0.839 38 H 0.167 0.833 39 H 0.418 0.582 40 H 0.051 0.949 41 H 0.033 0.967 42 H 0.139 0.861 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.115 0.885 46 H 0.107 0.893 47 H 0.104 0.896 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.787 14.370 29.108 33.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.048 4.048 3 C -0.194 4.194 4 C -0.165 4.165 5 C -0.065 4.065 6 C -0.243 4.243 7 C 0.308 3.692 8 O -0.435 6.435 9 N -0.362 5.362 10 C 0.000 4.000 11 C 0.017 3.983 12 H 0.138 0.862 13 C -0.160 4.160 14 C -0.027 4.027 15 N -0.389 5.389 16 C 0.345 3.655 17 O -0.445 6.445 18 C -0.267 4.267 19 S 0.071 5.929 20 C -0.692 4.692 21 H 0.102 0.898 22 C -0.194 4.194 23 N -0.549 5.549 24 Si 0.824 3.176 25 H -0.178 1.178 26 H -0.199 1.199 27 H -0.198 1.198 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.178 0.822 38 H 0.184 0.816 39 H 0.256 0.744 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.157 0.843 43 H 0.111 0.889 44 H 0.106 0.894 45 H 0.133 0.867 46 H 0.125 0.875 47 H 0.122 0.878 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.983 15.172 26.854 32.125 hybrid contribution -1.626 -1.397 -0.257 2.159 sum 7.357 13.775 26.597 30.843 Atomic orbital electron populations 1.22091 0.94315 0.99990 1.00760 1.19732 0.95502 0.95708 0.93824 1.21971 1.01436 0.93839 1.02176 1.21862 0.98552 1.00161 0.95959 1.24117 0.94288 0.93581 0.94476 1.22727 1.02379 0.98041 1.01187 1.19261 0.80915 0.80914 0.88159 1.91001 1.62629 1.66521 1.23346 1.45573 1.47038 1.25849 1.17746 1.21170 0.93308 0.92678 0.92829 1.23170 0.97257 0.89713 0.88184 0.86200 1.23537 0.94304 0.96989 1.01191 1.23363 0.97699 0.99577 0.82046 1.49833 1.34612 1.49724 1.04709 1.19712 0.85769 0.79166 0.80887 1.90709 1.39587 1.54554 1.59685 1.23244 1.00256 1.02767 1.00433 1.85671 1.36053 1.69716 1.01487 1.23212 1.10173 1.38030 0.97777 0.89828 1.26200 1.00919 0.97353 0.94917 1.70198 1.37545 1.44996 1.02141 0.84851 0.76710 0.77317 0.78711 1.17834 1.19913 1.19783 0.93529 0.95139 0.92937 0.91369 0.93253 0.91190 0.93126 0.95163 0.93850 0.82179 0.81570 0.74385 0.93027 0.94811 0.84292 0.88909 0.89414 0.86748 0.87525 0.87811 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.61 7.58 71.98 0.55 -2.06 16 2 C -0.05 -0.90 0.75 -52.93 -0.04 -0.94 16 3 C -0.14 -1.88 8.04 71.98 0.58 -1.30 16 4 C -0.11 -2.70 7.54 71.98 0.54 -2.16 16 5 C -0.05 -0.59 8.52 24.52 0.21 -0.38 16 6 C -0.22 -2.92 9.48 23.43 0.22 -2.70 16 7 C 0.52 11.18 5.77 86.57 0.50 11.67 16 8 O -0.55 -17.10 8.63 -4.09 -0.04 -17.14 16 9 N -0.71 -12.25 5.55 -466.71 -2.59 -14.84 16 10 C 0.13 3.17 5.46 86.38 0.47 3.64 16 11 C 0.12 2.20 4.07 41.80 0.17 2.37 16 12 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 13 C -0.12 -1.16 8.02 30.93 0.25 -0.92 16 14 C 0.09 1.33 8.42 83.18 0.70 2.03 16 15 N -0.65 -17.42 3.57 -833.65 -2.97 -20.39 16 16 C 0.56 22.35 7.97 87.66 0.70 23.04 16 17 O -0.57 -28.71 15.47 -3.04 -0.05 -28.76 16 18 C -0.12 -4.91 5.99 71.23 0.43 -4.48 16 19 S -0.16 -9.10 20.57 -56.49 -1.16 -10.26 16 20 C -0.54 -31.91 9.50 67.95 0.65 -31.26 16 21 H 0.08 4.54 7.80 -2.91 -0.02 4.52 16 22 C 0.01 0.62 5.49 84.86 0.47 1.08 16 23 N -0.91 -57.49 13.22 21.65 0.29 -57.20 16 24 Si 1.00 44.39 29.55 68.60 2.03 46.41 16 25 H -0.25 -10.46 7.11 99.48 0.71 -9.75 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 28 H 0.05 0.88 7.75 -2.39 -0.02 0.86 16 29 H 0.03 0.86 7.00 -2.39 -0.02 0.84 16 30 H 0.05 1.25 4.61 -2.38 -0.01 1.24 16 31 H 0.07 0.75 8.11 -2.39 -0.02 0.74 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.74 8.12 -2.39 -0.02 0.72 16 34 H 0.05 1.46 5.50 -2.39 -0.01 1.44 16 35 H 0.03 0.90 7.17 -2.39 -0.02 0.88 16 36 H 0.04 0.92 7.80 -2.39 -0.02 0.90 16 37 H 0.16 0.96 8.01 -2.91 -0.02 0.94 16 38 H 0.17 0.81 8.06 -2.91 -0.02 0.78 16 39 H 0.42 3.37 8.46 -92.71 -0.78 2.59 16 40 H 0.05 1.47 7.90 -2.39 -0.02 1.45 16 41 H 0.03 1.25 7.16 -2.39 -0.02 1.23 16 42 H 0.14 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.09 1.06 7.95 -2.39 -0.02 1.04 16 44 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 47 H 0.10 4.03 8.14 -2.40 -0.02 4.01 16 48 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -90.40 397.20 2.06 -88.34 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.17 Total: 16.19 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 6.38 Total: -2.35 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -5.28 Total: -92.43 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -0.08 Total: -45.90 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: -9.10 SS G_CDS: -1.16 Total: -10.26 kcal Total: -90.40 2.06 -88.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705189681.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.383 kcal (2) G-P(sol) polarization free energy of solvation -90.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds