Wall clock time and date at job start Sat Apr 11 2020 06:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50705 * 119.99907 * 2 1 4 4 C 1.50700 * 120.00268 * 180.02562 * 2 1 3 5 5 C 1.53001 * 109.46873 * 3.40221 * 4 2 1 6 6 C 1.53004 * 109.47208 * 243.40469 * 4 2 1 7 7 C 1.50695 * 109.47343 * 123.40311 * 4 2 1 8 8 O 1.21279 * 119.99931 * 354.00069 * 7 4 2 9 9 N 1.34780 * 120.00148 * 174.00323 * 7 4 2 10 10 C 1.46501 * 120.00215 * 179.97438 * 9 7 4 11 11 C 1.53001 * 109.47152 * 184.95171 * 10 9 7 12 12 H 1.09000 * 112.77479 * 314.71720 * 11 10 9 13 13 C 1.53748 * 113.55141 * 85.57307 * 11 10 9 14 14 C 1.53499 * 83.25649 * 140.98640 * 13 11 10 15 15 N 1.47060 * 87.98493 * 333.76337 * 14 13 11 16 16 C 1.34776 * 136.05725 * 207.08126 * 15 14 13 17 17 O 1.21282 * 119.99880 * 174.75769 * 16 15 14 18 18 C 1.50701 * 120.00248 * 354.75427 * 16 15 14 19 19 S 1.80996 * 109.47215 * 179.97438 * 18 16 15 20 20 C 1.76203 * 99.99940 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00085 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00030 * 180.02562 * 20 19 18 23 23 N 1.31623 * 120.00116 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 120.00006 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46747 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47156 * 119.99810 * 24 22 20 27 27 H 1.48491 * 109.47033 * 239.99989 * 24 22 20 28 28 H 1.08003 * 120.00339 * 5.37692 * 1 2 3 29 29 H 1.08003 * 119.99749 * 185.37780 * 1 2 3 30 30 H 1.08998 * 109.46952 * 270.00257 * 3 2 1 31 31 H 1.08993 * 109.46683 * 30.00432 * 3 2 1 32 32 H 1.09000 * 109.46939 * 150.00277 * 3 2 1 33 33 H 1.09007 * 109.47158 * 180.02562 * 5 4 2 34 34 H 1.08996 * 109.47054 * 299.99828 * 5 4 2 35 35 H 1.09002 * 109.47221 * 60.00360 * 5 4 2 36 36 H 1.09005 * 109.46801 * 300.00034 * 6 4 2 37 37 H 1.08997 * 109.46952 * 59.99570 * 6 4 2 38 38 H 1.08994 * 109.47381 * 179.97438 * 6 4 2 39 39 H 0.97001 * 119.99888 * 359.97438 * 9 7 4 40 40 H 1.09004 * 109.46535 * 64.95246 * 10 9 7 41 41 H 1.09001 * 109.47066 * 304.95365 * 10 9 7 42 42 H 1.09007 * 114.39768 * 27.42519 * 13 11 10 43 43 H 1.08996 * 114.09022 * 254.53131 * 13 11 10 44 44 H 1.09007 * 113.46788 * 218.98470 * 14 13 11 45 45 H 1.09005 * 113.52020 * 88.55678 * 14 13 11 46 46 H 1.08997 * 109.46838 * 59.99830 * 18 16 15 47 47 H 1.08997 * 109.47174 * 300.00226 * 18 16 15 48 48 H 0.97002 * 120.00263 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 1.0715 -2.4667 -0.0867 6 6 2.8778 -1.4244 1.2893 7 6 2.9921 -1.3485 -1.1867 8 8 2.9599 -0.4629 -2.0147 9 7 3.8582 -2.3715 -1.3274 10 6 4.7606 -2.4140 -2.4807 11 6 5.5446 -3.7278 -2.4667 12 1 5.9393 -3.9731 -1.4807 13 6 4.8001 -4.8946 -3.1360 14 6 6.1981 -5.2466 -3.6634 15 7 6.5465 -3.8233 -3.5390 16 6 7.4088 -2.9793 -4.1395 17 8 7.3926 -1.7983 -3.8638 18 6 8.3932 -3.5029 -5.1533 19 16 9.4040 -2.1361 -5.7747 20 6 10.4350 -3.0080 -6.9067 21 1 10.3168 -4.0740 -7.0338 22 6 11.3990 -2.3249 -7.6351 23 7 11.5427 -1.0257 -7.4806 24 14 12.4916 -3.2493 -8.8358 25 1 12.1314 -4.6898 -8.8245 26 1 12.2997 -2.7012 -10.2024 27 1 13.9125 -3.0917 -8.4342 28 1 -0.5401 0.9312 -0.0876 29 1 -0.5400 -0.9312 0.0877 30 1 2.2450 1.6198 -1.0277 31 1 1.4744 2.0647 0.5139 32 1 3.0159 1.1748 0.5138 33 1 1.6165 -3.4107 -0.0867 34 1 0.3999 -2.4353 0.7712 35 1 0.4913 -2.3817 -1.0056 36 1 3.5845 -0.5968 1.3506 37 1 2.2062 -1.3930 2.1471 38 1 3.4225 -2.3685 1.2891 39 1 3.8842 -3.0796 -0.6649 40 1 5.4553 -1.5756 -2.4295 41 1 4.1786 -2.3479 -3.4000 42 1 4.0934 -4.5934 -3.9094 43 1 4.3908 -5.6218 -2.4348 44 1 6.1962 -5.6047 -4.6929 45 1 6.7657 -5.8927 -2.9936 46 1 7.8527 -3.9605 -5.9818 47 1 9.0367 -4.2471 -4.6841 48 1 12.2167 -0.5484 -7.9894 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001705227062.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:07 Heat of formation + Delta-G solvation = -20.465483 kcal Electronic energy + Delta-G solvation = -27037.647937 eV Core-core repulsion = 23220.718005 eV Total energy + Delta-G solvation = -3816.929932 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.82508 -40.18039 -37.59885 -36.96017 -34.91432 -32.43864 -32.33966 -30.72047 -28.87199 -28.49449 -28.07578 -26.36396 -25.48668 -24.38320 -23.13271 -22.17028 -20.88563 -19.20393 -18.36591 -17.70170 -16.84204 -16.74473 -16.42454 -15.80439 -15.61334 -15.28977 -14.94070 -14.81152 -14.45570 -14.36499 -14.03729 -13.91518 -13.62106 -13.32565 -12.97358 -12.86234 -12.68806 -12.65242 -12.54932 -12.52619 -12.33242 -12.10769 -11.98739 -11.88644 -11.67703 -11.36972 -11.07744 -11.04491 -11.02189 -10.84090 -10.76642 -9.92984 -9.82270 -9.45399 -9.22958 -9.11171 -9.08291 -8.68102 -8.24218 -6.51333 -6.22342 -3.93280 1.91895 2.50086 2.55445 2.98798 3.14609 3.21055 3.27075 3.31056 3.56837 4.04137 4.12938 4.19146 4.34468 4.50967 4.56302 4.63269 4.70905 4.78133 4.92013 4.94898 5.09611 5.12675 5.13839 5.23377 5.29394 5.29856 5.34359 5.39913 5.43456 5.50888 5.56825 5.59892 5.64902 5.75146 5.79490 5.80140 5.83390 5.93892 5.94755 6.07140 6.12291 6.28248 6.36887 6.61042 7.28161 7.59027 7.79903 8.07676 8.34602 8.50539 9.22839 10.85126 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021841 B = 0.002046 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.701255 B =13681.601088 C =14578.136303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 C -0.119 4.119 4 C -0.048 4.048 5 C -0.141 4.141 6 C -0.140 4.140 7 C 0.524 3.476 8 O -0.524 6.524 9 N -0.726 5.726 10 C 0.113 3.887 11 C 0.123 3.877 12 H 0.094 0.906 13 C -0.151 4.151 14 C 0.101 3.899 15 N -0.647 5.647 16 C 0.561 3.439 17 O -0.508 6.508 18 C -0.144 4.144 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.279 1.279 27 H -0.280 1.280 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.397 0.603 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.996 -9.366 18.884 30.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.090 4.090 3 C -0.175 4.175 4 C -0.051 4.051 5 C -0.199 4.199 6 C -0.197 4.197 7 C 0.309 3.691 8 O -0.399 6.399 9 N -0.379 5.379 10 C -0.011 4.011 11 C 0.019 3.981 12 H 0.112 0.888 13 C -0.189 4.189 14 C -0.022 4.022 15 N -0.387 5.387 16 C 0.351 3.649 17 O -0.381 6.381 18 C -0.295 4.295 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.746 3.254 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.206 1.206 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.231 0.769 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.116 0.884 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.739 -6.618 18.477 29.288 hybrid contribution 0.908 -2.388 -0.793 2.675 sum -20.831 -9.006 17.685 28.771 Atomic orbital electron populations 1.23765 0.95069 1.02291 1.02948 1.21243 0.94893 0.94066 0.98839 1.20868 0.99543 0.93866 1.03250 1.19843 0.95324 0.95500 0.94466 1.21934 0.98729 0.96070 1.03131 1.21877 0.99907 1.02549 0.95378 1.20337 0.80404 0.81465 0.86897 1.90740 1.68773 1.36973 1.43399 1.45852 1.38943 1.26098 1.26995 1.21602 0.92466 0.98183 0.88842 1.22810 0.87622 0.94604 0.93089 0.88813 1.23629 0.96540 0.97699 1.01038 1.22887 0.93282 0.83511 1.02558 1.49753 1.39735 1.11159 1.38037 1.20013 0.78701 0.85190 0.81024 1.90729 1.68692 1.15456 1.63204 1.23474 1.00010 1.06460 0.99514 1.85445 1.39175 1.07201 1.51481 1.22892 1.21615 0.96557 1.27239 0.90877 1.25003 0.96750 0.95031 0.96857 1.70026 1.33119 1.07051 1.40002 0.86104 0.79713 0.79518 0.80084 1.19623 1.20533 1.20560 0.88225 0.87927 0.90163 0.92158 0.92188 0.91820 0.90962 0.91603 0.91589 0.91162 0.91877 0.76896 0.89474 0.90606 0.88438 0.89302 0.90007 0.89761 0.89336 0.89300 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.65 13.27 29.02 0.39 -1.26 16 2 C -0.09 -0.84 4.42 -101.06 -0.45 -1.29 16 3 C -0.12 -1.19 9.07 36.01 0.33 -0.87 16 4 C -0.05 -0.39 0.74 -156.81 -0.12 -0.51 16 5 C -0.14 -0.81 7.11 37.16 0.26 -0.55 16 6 C -0.14 -0.86 8.18 37.16 0.30 -0.55 16 7 C 0.52 6.02 6.32 -10.99 -0.07 5.95 16 8 O -0.52 -8.54 14.70 5.56 0.08 -8.46 16 9 N -0.73 -6.78 5.39 -60.29 -0.32 -7.11 16 10 C 0.11 1.41 5.39 -4.04 -0.02 1.39 16 11 C 0.12 1.24 4.09 -72.28 -0.30 0.95 16 12 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 13 C -0.15 -1.06 8.03 -26.08 -0.21 -1.26 16 14 C 0.10 0.90 8.41 -8.52 -0.07 0.83 16 15 N -0.65 -8.91 3.56 -177.32 -0.63 -9.55 16 16 C 0.56 10.87 8.02 -10.99 -0.09 10.78 16 17 O -0.51 -11.88 15.24 5.56 0.08 -11.79 16 18 C -0.14 -2.99 5.99 36.01 0.22 -2.77 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 20 C -0.53 -15.36 9.50 30.94 0.29 -15.06 16 21 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.38 13.22 55.49 0.73 -25.64 16 24 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H 0.10 0.75 8.05 -52.48 -0.42 0.33 16 29 H 0.10 0.67 5.73 -52.48 -0.30 0.37 16 30 H 0.08 0.99 7.37 -51.93 -0.38 0.61 16 31 H 0.06 0.50 8.06 -51.93 -0.42 0.08 16 32 H 0.06 0.59 6.82 -51.93 -0.35 0.23 16 33 H 0.06 0.26 8.01 -51.93 -0.42 -0.15 16 34 H 0.07 0.32 7.25 -51.93 -0.38 -0.05 16 35 H 0.06 0.45 7.73 -51.93 -0.40 0.05 16 36 H 0.07 0.48 6.94 -51.93 -0.36 0.12 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.28 7.25 -51.93 -0.38 -0.10 16 39 H 0.40 2.29 7.41 -40.82 -0.30 1.99 16 40 H 0.09 1.46 7.06 -51.93 -0.37 1.09 16 41 H 0.08 1.07 7.91 -51.93 -0.41 0.66 16 42 H 0.10 0.75 7.97 -51.92 -0.41 0.34 16 43 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 47 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 48 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 LS Contribution 404.25 15.07 6.09 6.09 Total: -1.00 -37.66 404.25 -8.63 -46.30 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -7.81 Total: -0.25 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 0.37 Total: -2.24 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: -0.22 Total: -42.30 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: 0.17 Total: -20.25 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.66 -8.63 -46.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705227062.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.831 kcal (2) G-P(sol) polarization free energy of solvation -37.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds