Wall clock time and date at job start Sat Apr 11 2020 06:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50705 * 119.99907 * 2 1 4 4 C 1.50700 * 120.00268 * 180.02562 * 2 1 3 5 5 C 1.53001 * 109.46873 * 3.40221 * 4 2 1 6 6 C 1.53004 * 109.47208 * 243.40469 * 4 2 1 7 7 C 1.50695 * 109.47343 * 123.40311 * 4 2 1 8 8 O 1.21279 * 119.99931 * 354.00069 * 7 4 2 9 9 N 1.34780 * 120.00148 * 174.00323 * 7 4 2 10 10 C 1.46501 * 120.00215 * 179.97438 * 9 7 4 11 11 C 1.53001 * 109.47152 * 184.95171 * 10 9 7 12 12 H 1.09000 * 112.77479 * 314.71720 * 11 10 9 13 13 C 1.53748 * 113.55141 * 85.57307 * 11 10 9 14 14 C 1.53499 * 83.25649 * 140.98640 * 13 11 10 15 15 N 1.47060 * 87.98493 * 333.76337 * 14 13 11 16 16 C 1.34776 * 136.05725 * 207.08126 * 15 14 13 17 17 O 1.21282 * 119.99880 * 174.75769 * 16 15 14 18 18 C 1.50701 * 120.00248 * 354.75427 * 16 15 14 19 19 S 1.80996 * 109.47215 * 179.97438 * 18 16 15 20 20 C 1.76203 * 99.99940 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00085 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00030 * 180.02562 * 20 19 18 23 23 N 1.31623 * 120.00116 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 120.00006 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46747 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47156 * 119.99810 * 24 22 20 27 27 H 1.48491 * 109.47033 * 239.99989 * 24 22 20 28 28 H 1.08003 * 120.00339 * 5.37692 * 1 2 3 29 29 H 1.08003 * 119.99749 * 185.37780 * 1 2 3 30 30 H 1.08998 * 109.46952 * 270.00257 * 3 2 1 31 31 H 1.08993 * 109.46683 * 30.00432 * 3 2 1 32 32 H 1.09000 * 109.46939 * 150.00277 * 3 2 1 33 33 H 1.09007 * 109.47158 * 180.02562 * 5 4 2 34 34 H 1.08996 * 109.47054 * 299.99828 * 5 4 2 35 35 H 1.09002 * 109.47221 * 60.00360 * 5 4 2 36 36 H 1.09005 * 109.46801 * 300.00034 * 6 4 2 37 37 H 1.08997 * 109.46952 * 59.99570 * 6 4 2 38 38 H 1.08994 * 109.47381 * 179.97438 * 6 4 2 39 39 H 0.97001 * 119.99888 * 359.97438 * 9 7 4 40 40 H 1.09004 * 109.46535 * 64.95246 * 10 9 7 41 41 H 1.09001 * 109.47066 * 304.95365 * 10 9 7 42 42 H 1.09007 * 114.39768 * 27.42519 * 13 11 10 43 43 H 1.08996 * 114.09022 * 254.53131 * 13 11 10 44 44 H 1.09007 * 113.46788 * 218.98470 * 14 13 11 45 45 H 1.09005 * 113.52020 * 88.55678 * 14 13 11 46 46 H 1.08997 * 109.46838 * 59.99830 * 18 16 15 47 47 H 1.08997 * 109.47174 * 300.00226 * 18 16 15 48 48 H 0.97002 * 120.00263 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 1.0715 -2.4667 -0.0867 6 6 2.8778 -1.4244 1.2893 7 6 2.9921 -1.3485 -1.1867 8 8 2.9599 -0.4629 -2.0147 9 7 3.8582 -2.3715 -1.3274 10 6 4.7606 -2.4140 -2.4807 11 6 5.5446 -3.7278 -2.4667 12 1 5.9393 -3.9731 -1.4807 13 6 4.8001 -4.8946 -3.1360 14 6 6.1981 -5.2466 -3.6634 15 7 6.5465 -3.8233 -3.5390 16 6 7.4088 -2.9793 -4.1395 17 8 7.3926 -1.7983 -3.8638 18 6 8.3932 -3.5029 -5.1533 19 16 9.4040 -2.1361 -5.7747 20 6 10.4350 -3.0080 -6.9067 21 1 10.3168 -4.0740 -7.0338 22 6 11.3990 -2.3249 -7.6351 23 7 11.5427 -1.0257 -7.4806 24 14 12.4916 -3.2493 -8.8358 25 1 12.1314 -4.6898 -8.8245 26 1 12.2997 -2.7012 -10.2024 27 1 13.9125 -3.0917 -8.4342 28 1 -0.5401 0.9312 -0.0876 29 1 -0.5400 -0.9312 0.0877 30 1 2.2450 1.6198 -1.0277 31 1 1.4744 2.0647 0.5139 32 1 3.0159 1.1748 0.5138 33 1 1.6165 -3.4107 -0.0867 34 1 0.3999 -2.4353 0.7712 35 1 0.4913 -2.3817 -1.0056 36 1 3.5845 -0.5968 1.3506 37 1 2.2062 -1.3930 2.1471 38 1 3.4225 -2.3685 1.2891 39 1 3.8842 -3.0796 -0.6649 40 1 5.4553 -1.5756 -2.4295 41 1 4.1786 -2.3479 -3.4000 42 1 4.0934 -4.5934 -3.9094 43 1 4.3908 -5.6218 -2.4348 44 1 6.1962 -5.6047 -4.6929 45 1 6.7657 -5.8927 -2.9936 46 1 7.8527 -3.9605 -5.9818 47 1 9.0367 -4.2471 -4.6841 48 1 12.2167 -0.5484 -7.9894 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001705227062.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:06 Heat of formation + Delta-G solvation = -47.846595 kcal Electronic energy + Delta-G solvation = -27038.835271 eV Core-core repulsion = 23220.718005 eV Total energy + Delta-G solvation = -3818.117266 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.77174 -41.13190 -38.95648 -37.74916 -35.90933 -34.62097 -33.06214 -32.08295 -29.54944 -29.46889 -29.19893 -27.67923 -26.97500 -25.09595 -23.91685 -23.19223 -21.77043 -20.36919 -19.67762 -19.11097 -18.03343 -17.54888 -17.44438 -16.92765 -16.83697 -16.65431 -16.37396 -16.02729 -15.66831 -15.53750 -15.18263 -14.88584 -14.66326 -14.45197 -14.10794 -13.85063 -13.83752 -13.43744 -13.42288 -13.30342 -13.18049 -13.06082 -13.05317 -12.94003 -12.87653 -12.63466 -12.51503 -12.43090 -11.95975 -11.74920 -11.71981 -11.60026 -11.18919 -10.92435 -10.78089 -10.31764 -10.16498 -9.92214 -9.79337 -8.72331 -8.37645 -6.17206 1.14320 1.24529 1.39763 1.40324 1.53017 1.55308 1.60620 1.84869 2.24159 2.36807 2.96461 3.17584 3.33136 3.49481 3.65875 3.70225 3.78123 3.94048 3.99358 4.03494 4.08572 4.22040 4.31465 4.41543 4.46903 4.58920 4.61811 4.67530 4.72800 4.73093 4.73544 4.81083 4.86554 4.89201 4.97577 4.99751 5.07310 5.12287 5.25178 5.27510 5.31124 5.38194 5.38670 5.69303 5.92828 6.16822 6.51386 6.60070 7.03095 7.08801 7.24788 8.72026 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021841 B = 0.002046 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.701255 B =13681.601088 C =14578.136303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.118 4.118 3 C -0.117 4.117 4 C -0.041 4.041 5 C -0.139 4.139 6 C -0.138 4.138 7 C 0.516 3.484 8 O -0.583 6.583 9 N -0.705 5.705 10 C 0.123 3.877 11 C 0.121 3.879 12 H 0.128 0.872 13 C -0.124 4.124 14 C 0.095 3.905 15 N -0.651 5.651 16 C 0.555 3.445 17 O -0.566 6.566 18 C -0.116 4.116 19 S -0.157 6.157 20 C -0.544 4.544 21 H 0.084 0.916 22 C 0.011 3.989 23 N -0.912 5.912 24 Si 1.003 2.997 25 H -0.255 1.255 26 H -0.274 1.274 27 H -0.273 1.273 28 H 0.101 0.899 29 H 0.124 0.876 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.419 0.581 40 H 0.034 0.966 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.141 0.859 44 H 0.086 0.914 45 H 0.117 0.883 46 H 0.103 0.897 47 H 0.107 0.893 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.502 -14.207 20.551 34.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.119 4.119 3 C -0.174 4.174 4 C -0.044 4.044 5 C -0.196 4.196 6 C -0.196 4.196 7 C 0.304 3.696 8 O -0.462 6.462 9 N -0.359 5.359 10 C -0.003 4.003 11 C 0.018 3.982 12 H 0.145 0.855 13 C -0.161 4.161 14 C -0.026 4.026 15 N -0.388 5.388 16 C 0.345 3.655 17 O -0.444 6.444 18 C -0.267 4.267 19 S 0.070 5.930 20 C -0.692 4.692 21 H 0.102 0.898 22 C -0.194 4.194 23 N -0.549 5.549 24 Si 0.824 3.176 25 H -0.178 1.178 26 H -0.199 1.199 27 H -0.198 1.198 28 H 0.119 0.881 29 H 0.142 0.858 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.258 0.742 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.108 0.892 43 H 0.159 0.841 44 H 0.105 0.895 45 H 0.135 0.865 46 H 0.122 0.878 47 H 0.126 0.874 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.291 -11.565 20.204 32.931 hybrid contribution 1.220 -0.905 -1.214 1.945 sum -22.072 -12.471 18.990 31.675 Atomic orbital electron populations 1.23999 0.94634 1.03421 1.00751 1.21384 0.95598 0.94193 1.00709 1.20817 0.99998 0.95387 1.01185 1.19873 0.95192 0.96010 0.93363 1.21979 0.98469 0.95739 1.03436 1.21917 0.99859 1.03013 0.94775 1.21184 0.80548 0.80664 0.87232 1.90723 1.70526 1.39177 1.45777 1.45613 1.37518 1.26316 1.26432 1.21260 0.91801 0.98108 0.89091 1.23257 0.86844 0.94230 0.93917 0.85492 1.23585 0.95236 0.96270 1.01057 1.23370 0.94506 0.80694 1.04061 1.49823 1.37912 1.13187 1.37922 1.19716 0.79442 0.85069 0.81315 1.90711 1.70633 1.17949 1.65155 1.23253 0.99619 1.03361 1.00485 1.85672 1.41582 1.13000 1.52714 1.23212 1.21762 0.96938 1.27260 0.89816 1.26198 0.98350 0.95966 0.98882 1.70200 1.34135 1.09160 1.41384 0.84852 0.77216 0.78599 0.76939 1.17813 1.19932 1.19810 0.88067 0.85799 0.93557 0.90715 0.92660 0.89407 0.88868 0.92814 0.93477 0.89303 0.89548 0.74228 0.94734 0.93048 0.89223 0.84148 0.89549 0.86476 0.87848 0.87437 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.83 13.27 67.79 0.90 -1.93 16 2 C -0.12 -2.19 4.42 -16.48 -0.07 -2.26 16 3 C -0.12 -2.55 9.07 71.24 0.65 -1.90 16 4 C -0.04 -0.61 0.74 -53.67 -0.04 -0.65 16 5 C -0.14 -1.13 7.11 71.98 0.51 -0.62 16 6 C -0.14 -1.39 8.18 71.98 0.59 -0.80 16 7 C 0.52 12.05 6.32 87.65 0.55 12.61 16 8 O -0.58 -20.62 14.70 -3.03 -0.04 -20.66 16 9 N -0.70 -12.49 5.39 -463.05 -2.49 -14.99 16 10 C 0.12 3.15 5.39 86.38 0.47 3.61 16 11 C 0.12 2.14 4.09 41.87 0.17 2.31 16 12 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 13 C -0.12 -1.15 8.03 31.01 0.25 -0.91 16 14 C 0.09 1.29 8.41 83.17 0.70 1.98 16 15 N -0.65 -17.05 3.56 -833.31 -2.97 -20.02 16 16 C 0.56 22.07 8.02 87.66 0.70 22.78 16 17 O -0.57 -28.41 15.24 -3.04 -0.05 -28.45 16 18 C -0.12 -4.86 5.99 71.24 0.43 -4.43 16 19 S -0.16 -9.07 20.57 -56.49 -1.16 -10.24 16 20 C -0.54 -31.75 9.50 67.95 0.65 -31.10 16 21 H 0.08 4.52 7.80 -2.91 -0.02 4.50 16 22 C 0.01 0.61 5.49 84.86 0.47 1.08 16 23 N -0.91 -57.33 13.22 21.65 0.29 -57.04 16 24 Si 1.00 44.22 29.55 68.60 2.03 46.25 16 25 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 26 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 28 H 0.10 1.43 8.05 -2.91 -0.02 1.41 16 29 H 0.12 1.27 5.73 -2.91 -0.02 1.25 16 30 H 0.05 1.30 7.37 -2.39 -0.02 1.28 16 31 H 0.07 1.31 8.06 -2.39 -0.02 1.29 16 32 H 0.05 1.19 6.82 -2.39 -0.02 1.18 16 33 H 0.09 0.29 8.01 -2.38 -0.02 0.27 16 34 H 0.09 0.41 7.25 -2.39 -0.02 0.40 16 35 H 0.05 0.59 7.73 -2.39 -0.02 0.58 16 36 H 0.05 0.66 6.94 -2.38 -0.02 0.64 16 37 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.09 0.43 7.25 -2.39 -0.02 0.42 16 39 H 0.42 3.42 7.41 -92.71 -0.69 2.73 16 40 H 0.03 1.27 7.06 -2.38 -0.02 1.25 16 41 H 0.05 1.55 7.91 -2.39 -0.02 1.53 16 42 H 0.09 1.07 7.97 -2.38 -0.02 1.05 16 43 H 0.14 0.06 8.14 -2.39 -0.02 0.04 16 44 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 45 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 46 H 0.10 3.96 8.14 -2.40 -0.02 3.94 16 47 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 48 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -92.92 404.25 2.78 -90.14 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.27 Total: 15.26 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 6.91 Total: -0.24 kcal Atomic # 7 Polarization: -86.87 SS G_CDS: -5.18 Total: -92.05 kcal Atomic # 8 Polarization: -49.03 SS G_CDS: -0.09 Total: -49.12 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -9.07 SS G_CDS: -1.16 Total: -10.24 kcal Total: -92.92 2.78 -90.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705227062.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.292 kcal (2) G-P(sol) polarization free energy of solvation -92.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds