Wall clock time and date at job start Sat Apr 11 2020 06:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50707 * 119.99612 * 2 1 4 4 C 1.52997 * 109.46886 * 245.26896 * 3 2 1 5 5 C 1.52994 * 109.47229 * 5.26618 * 3 2 1 6 6 C 1.53004 * 109.47025 * 176.61349 * 5 3 2 7 7 C 1.50698 * 109.46825 * 125.26882 * 3 2 1 8 8 O 1.21277 * 120.00518 * 352.89608 * 7 3 2 9 9 N 1.34784 * 119.99545 * 172.89030 * 7 3 2 10 10 C 1.46497 * 119.99804 * 176.61974 * 9 7 3 11 11 C 1.52996 * 115.55623 * 295.08071 * 10 9 7 12 12 N 1.46498 * 109.46961 * 272.20147 * 11 10 9 13 13 C 1.34780 * 119.99609 * 175.33914 * 12 11 10 14 14 O 1.21277 * 120.00268 * 0.27057 * 13 12 11 15 15 C 1.50706 * 119.99734 * 180.27096 * 13 12 11 16 16 S 1.80993 * 109.46990 * 179.97438 * 15 13 12 17 17 C 1.76202 * 100.00065 * 180.02562 * 16 15 13 18 18 H 1.07996 * 119.99612 * 359.97438 * 17 16 15 19 19 C 1.38793 * 120.00295 * 180.02562 * 17 16 15 20 20 N 1.31629 * 120.00332 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99996 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46741 * 90.00124 * 21 19 17 23 23 H 1.48497 * 109.47093 * 210.00313 * 21 19 17 24 24 H 1.48501 * 109.47177 * 330.00693 * 21 19 17 25 25 C 1.53001 * 117.49281 * 80.75388 * 10 9 7 26 26 C 1.53002 * 117.49553 * 149.40790 * 10 9 7 27 27 H 1.08006 * 120.00000 * 185.59505 * 1 2 3 28 28 H 1.07999 * 119.99900 * 5.60628 * 1 2 3 29 29 H 1.07998 * 120.00292 * 179.97438 * 2 1 3 30 30 H 1.09005 * 109.47400 * 300.00340 * 4 3 2 31 31 H 1.08997 * 109.47366 * 59.99853 * 4 3 2 32 32 H 1.08994 * 109.47242 * 179.97438 * 4 3 2 33 33 H 1.08996 * 109.47598 * 296.61625 * 5 3 2 34 34 H 1.08999 * 109.47332 * 56.61643 * 5 3 2 35 35 H 1.09001 * 109.46759 * 299.00944 * 6 5 3 36 36 H 1.09001 * 109.47003 * 59.01584 * 6 5 3 37 37 H 1.09005 * 109.46646 * 179.00969 * 6 5 3 38 38 H 0.97002 * 119.99891 * 356.63042 * 9 7 3 39 39 H 1.08998 * 109.47048 * 152.19189 * 11 10 9 40 40 H 1.09009 * 109.46682 * 32.19586 * 11 10 9 41 41 H 0.97000 * 120.00249 * 355.60558 * 12 11 10 42 42 H 1.09006 * 109.46969 * 299.99733 * 15 13 12 43 43 H 1.08999 * 109.47023 * 59.99555 * 15 13 12 44 44 H 0.96996 * 120.00290 * 179.97438 * 20 19 17 45 45 H 1.09010 * 117.49766 * 215.00200 * 25 10 9 46 46 H 1.09001 * 117.50478 * 0.02562 * 25 10 9 47 47 H 1.09005 * 117.50057 * 359.97438 * 26 10 9 48 48 H 1.08996 * 117.49983 * 144.97887 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.8410 1.4451 -1.3102 5 6 1.0745 2.4650 0.1324 6 6 1.8443 3.7845 0.2173 7 6 3.0251 1.3300 1.1600 8 8 3.0027 0.4418 1.9855 9 7 3.9101 2.3395 1.2801 10 6 4.7945 2.4033 2.4463 11 6 4.0983 2.6178 3.7917 12 7 3.9411 4.0535 4.0367 13 6 3.2671 4.4819 5.1224 14 8 2.7949 3.6790 5.8990 15 6 3.1001 5.9589 5.3713 16 16 2.1563 6.2110 6.8950 17 6 2.1121 7.9719 6.9397 18 1 2.5900 8.5440 6.1583 19 6 1.4640 8.6237 7.9797 20 7 1.4306 9.9391 8.0128 21 14 0.6381 7.6340 9.3318 22 1 1.6105 7.3826 10.4256 23 1 -0.5206 8.3947 9.8646 24 1 0.1679 6.3380 8.7799 25 6 6.0477 1.5256 2.4313 26 6 6.1720 3.0410 2.2541 27 1 -0.5400 -0.9309 0.0912 28 1 -0.5400 0.9308 -0.0914 29 1 1.8500 -0.9353 0.0004 30 1 3.5456 0.6188 -1.4046 31 1 2.1455 1.4271 -2.1492 32 1 3.3856 2.3893 -1.3104 33 1 0.4172 2.4831 -0.7369 34 1 0.4787 2.3332 1.0356 35 1 2.4885 3.7733 1.0965 36 1 2.4535 3.9080 -0.6781 37 1 1.1391 4.6122 0.2939 38 1 3.9614 3.0237 0.5944 39 1 4.7001 2.1771 4.5865 40 1 3.1173 2.1428 3.7728 41 1 4.3188 4.6958 3.4156 42 1 4.0810 6.4239 5.4699 43 1 2.5665 6.4103 4.5349 44 1 0.9773 10.3946 8.7394 45 1 6.3761 1.1009 3.3800 46 1 6.2143 0.9011 1.5536 47 1 6.4203 3.4126 1.2599 48 1 6.5820 3.6136 3.0860 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001705249322.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:24 Heat of formation + Delta-G solvation = -25.040084 kcal Electronic energy + Delta-G solvation = -27761.291254 eV Core-core repulsion = 23944.162952 eV Total energy + Delta-G solvation = -3817.128302 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.05980 -39.37815 -38.12647 -36.71052 -34.07859 -33.55763 -32.43912 -31.64221 -30.04368 -29.84929 -26.55355 -25.60652 -25.53627 -23.39444 -23.05271 -21.94970 -20.38642 -19.99228 -19.04067 -17.95141 -16.99349 -16.92403 -16.34216 -16.02546 -15.87227 -15.47291 -15.17228 -14.98861 -14.96200 -14.71931 -13.94063 -13.82231 -13.67751 -13.27604 -13.20835 -12.89829 -12.87938 -12.80942 -12.75116 -12.49911 -12.12602 -11.96097 -11.88253 -11.67515 -11.28041 -11.24112 -11.13736 -11.00479 -10.91003 -10.73643 -10.60495 -9.99364 -9.85511 -9.63838 -9.53512 -9.22573 -9.01428 -8.94283 -8.49177 -6.91439 -6.29096 -4.00628 1.91348 2.37271 2.72388 2.76224 2.99942 3.12918 3.33568 3.46899 3.51747 3.73160 4.11310 4.20348 4.25567 4.33558 4.42397 4.50549 4.51670 4.63595 4.76216 4.88130 5.00708 5.01904 5.10128 5.12375 5.17052 5.21821 5.23248 5.32572 5.36648 5.48834 5.50853 5.51846 5.64083 5.69682 5.71982 5.76350 5.77627 5.85104 5.89443 6.00254 6.22029 6.31618 6.44140 6.50999 7.14084 7.61730 7.94010 7.95786 8.41093 8.51070 9.17346 10.80117 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014653 B = 0.002588 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.377816 B =10816.528006 C =11551.680572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.128 4.128 3 C -0.051 4.051 4 C -0.140 4.140 5 C -0.114 4.114 6 C -0.180 4.180 7 C 0.531 3.469 8 O -0.520 6.520 9 N -0.700 5.700 10 C 0.084 3.916 11 C 0.155 3.845 12 N -0.734 5.734 13 C 0.529 3.471 14 O -0.517 6.517 15 C -0.123 4.123 16 S -0.141 6.141 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.881 5.881 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.157 4.157 26 C -0.168 4.168 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.404 0.596 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.397 0.603 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.271 0.729 45 H 0.106 0.894 46 H 0.099 0.901 47 H 0.102 0.898 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.049 -16.343 -23.368 29.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.146 4.146 3 C -0.054 4.054 4 C -0.197 4.197 5 C -0.152 4.152 6 C -0.237 4.237 7 C 0.317 3.683 8 O -0.394 6.394 9 N -0.355 5.355 10 C -0.004 4.004 11 C 0.030 3.970 12 N -0.389 5.389 13 C 0.315 3.685 14 O -0.391 6.391 15 C -0.273 4.273 16 S 0.085 5.915 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.518 5.518 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.196 4.196 26 C -0.206 4.206 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.131 0.869 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.243 0.757 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.231 0.769 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.081 0.919 45 H 0.124 0.876 46 H 0.118 0.882 47 H 0.121 0.879 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.159 -18.169 -21.370 28.718 hybrid contribution 0.368 1.440 -0.928 1.753 sum 6.527 -16.729 -22.298 28.630 Atomic orbital electron populations 1.23976 0.95857 1.02479 1.00277 1.22454 0.95674 0.96377 1.00086 1.19938 0.95151 0.95993 0.94309 1.21891 1.00230 1.02231 0.95355 1.21648 0.97376 0.92761 1.03375 1.22311 1.01618 0.97334 1.02483 1.20415 0.80329 0.80974 0.86566 1.90727 1.69613 1.36376 1.42706 1.45829 1.37833 1.28418 1.23445 1.20809 0.84773 1.07377 0.87458 1.20907 1.01674 0.81985 0.92406 1.45980 1.58528 1.07293 1.27105 1.20288 0.77159 0.90740 0.80332 1.90717 1.46910 1.56253 1.45247 1.23269 1.05251 0.94202 1.04618 1.84834 1.69898 1.09762 1.27000 1.22314 1.41789 0.88395 1.14353 0.89410 1.24707 0.94730 0.94549 0.97305 1.69935 1.42090 1.07068 1.32669 0.86742 0.80182 0.82136 0.82849 1.19195 1.19945 1.15896 1.23349 0.98783 0.93165 1.04290 1.23375 0.96277 0.96775 1.04163 0.88087 0.87853 0.86919 0.91903 0.91061 0.91800 0.90292 0.90765 0.90921 0.92203 0.91535 0.75675 0.90596 0.90047 0.76865 0.88536 0.88576 0.91944 0.87611 0.88214 0.87924 0.87052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.54 13.66 29.01 0.40 -1.14 16 2 C -0.13 -1.14 8.01 -36.02 -0.29 -1.42 16 3 C -0.05 -0.40 0.72 -156.81 -0.11 -0.52 16 4 C -0.14 -0.74 8.01 37.16 0.30 -0.45 16 5 C -0.11 -0.86 3.65 -26.73 -0.10 -0.95 16 6 C -0.18 -1.20 8.29 37.16 0.31 -0.89 16 7 C 0.53 5.55 5.97 -10.98 -0.07 5.48 16 8 O -0.52 -7.62 15.18 5.56 0.08 -7.53 16 9 N -0.70 -5.62 3.75 -47.61 -0.18 -5.79 16 10 C 0.08 0.74 1.80 -131.82 -0.24 0.50 16 11 C 0.16 1.94 5.65 -4.04 -0.02 1.92 16 12 N -0.73 -9.30 5.46 -60.29 -0.33 -9.63 16 13 C 0.53 9.48 7.85 -10.98 -0.09 9.39 16 14 O -0.52 -11.53 15.86 5.56 0.09 -11.44 16 15 C -0.12 -2.35 6.16 36.01 0.22 -2.13 16 16 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 17 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 18 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 19 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.57 13.97 55.49 0.78 -25.80 16 21 Si 0.86 21.91 27.74 -169.99 -4.72 17.19 16 22 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 25 C -0.16 -1.22 10.11 -26.69 -0.27 -1.49 16 26 C -0.17 -1.04 9.72 -26.69 -0.26 -1.30 16 27 H 0.10 0.74 8.06 -52.48 -0.42 0.31 16 28 H 0.10 0.76 5.77 -52.49 -0.30 0.45 16 29 H 0.11 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.25 5.53 -51.93 -0.29 -0.04 16 33 H 0.08 0.48 7.38 -51.93 -0.38 0.10 16 34 H 0.07 0.70 7.62 -51.93 -0.40 0.31 16 35 H 0.07 0.56 5.31 -51.93 -0.28 0.29 16 36 H 0.06 0.27 6.32 -51.93 -0.33 -0.06 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.40 2.27 5.46 -40.82 -0.22 2.05 16 39 H 0.08 0.99 7.89 -51.93 -0.41 0.58 16 40 H 0.08 1.29 7.09 -51.92 -0.37 0.92 16 41 H 0.40 3.78 8.16 -40.82 -0.33 3.45 16 42 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 43 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.11 0.83 8.04 -51.92 -0.42 0.41 16 46 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 398.73 15.07 6.01 6.01 Total: -1.00 -36.22 398.73 -7.79 -44.01 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -7.53 Total: 3.55 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 0.00 Total: -4.97 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.27 Total: -41.22 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.17 Total: -18.97 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.72 Total: 17.19 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.22 -7.79 -44.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705249322.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.965 kcal (2) G-P(sol) polarization free energy of solvation -36.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds