Wall clock time and date at job start Sat Apr 11 2020 06:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50707 * 119.99612 * 2 1 4 4 C 1.52997 * 109.46886 * 245.26896 * 3 2 1 5 5 C 1.52994 * 109.47229 * 5.26618 * 3 2 1 6 6 C 1.53004 * 109.47025 * 176.61349 * 5 3 2 7 7 C 1.50698 * 109.46825 * 125.26882 * 3 2 1 8 8 O 1.21277 * 120.00518 * 352.89608 * 7 3 2 9 9 N 1.34784 * 119.99545 * 172.89030 * 7 3 2 10 10 C 1.46497 * 119.99804 * 176.61974 * 9 7 3 11 11 C 1.52996 * 115.55623 * 295.08071 * 10 9 7 12 12 N 1.46498 * 109.46961 * 272.20147 * 11 10 9 13 13 C 1.34780 * 119.99609 * 175.33914 * 12 11 10 14 14 O 1.21277 * 120.00268 * 0.27057 * 13 12 11 15 15 C 1.50706 * 119.99734 * 180.27096 * 13 12 11 16 16 S 1.80993 * 109.46990 * 179.97438 * 15 13 12 17 17 C 1.76202 * 100.00065 * 180.02562 * 16 15 13 18 18 H 1.07996 * 119.99612 * 359.97438 * 17 16 15 19 19 C 1.38793 * 120.00295 * 180.02562 * 17 16 15 20 20 N 1.31629 * 120.00332 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99996 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46741 * 90.00124 * 21 19 17 23 23 H 1.48497 * 109.47093 * 210.00313 * 21 19 17 24 24 H 1.48501 * 109.47177 * 330.00693 * 21 19 17 25 25 C 1.53001 * 117.49281 * 80.75388 * 10 9 7 26 26 C 1.53002 * 117.49553 * 149.40790 * 10 9 7 27 27 H 1.08006 * 120.00000 * 185.59505 * 1 2 3 28 28 H 1.07999 * 119.99900 * 5.60628 * 1 2 3 29 29 H 1.07998 * 120.00292 * 179.97438 * 2 1 3 30 30 H 1.09005 * 109.47400 * 300.00340 * 4 3 2 31 31 H 1.08997 * 109.47366 * 59.99853 * 4 3 2 32 32 H 1.08994 * 109.47242 * 179.97438 * 4 3 2 33 33 H 1.08996 * 109.47598 * 296.61625 * 5 3 2 34 34 H 1.08999 * 109.47332 * 56.61643 * 5 3 2 35 35 H 1.09001 * 109.46759 * 299.00944 * 6 5 3 36 36 H 1.09001 * 109.47003 * 59.01584 * 6 5 3 37 37 H 1.09005 * 109.46646 * 179.00969 * 6 5 3 38 38 H 0.97002 * 119.99891 * 356.63042 * 9 7 3 39 39 H 1.08998 * 109.47048 * 152.19189 * 11 10 9 40 40 H 1.09009 * 109.46682 * 32.19586 * 11 10 9 41 41 H 0.97000 * 120.00249 * 355.60558 * 12 11 10 42 42 H 1.09006 * 109.46969 * 299.99733 * 15 13 12 43 43 H 1.08999 * 109.47023 * 59.99555 * 15 13 12 44 44 H 0.96996 * 120.00290 * 179.97438 * 20 19 17 45 45 H 1.09010 * 117.49766 * 215.00200 * 25 10 9 46 46 H 1.09001 * 117.50478 * 0.02562 * 25 10 9 47 47 H 1.09005 * 117.50057 * 359.97438 * 26 10 9 48 48 H 1.08996 * 117.49983 * 144.97887 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.8410 1.4451 -1.3102 5 6 1.0745 2.4650 0.1324 6 6 1.8443 3.7845 0.2173 7 6 3.0251 1.3300 1.1600 8 8 3.0027 0.4418 1.9855 9 7 3.9101 2.3395 1.2801 10 6 4.7945 2.4033 2.4463 11 6 4.0983 2.6178 3.7917 12 7 3.9411 4.0535 4.0367 13 6 3.2671 4.4819 5.1224 14 8 2.7949 3.6790 5.8990 15 6 3.1001 5.9589 5.3713 16 16 2.1563 6.2110 6.8950 17 6 2.1121 7.9719 6.9397 18 1 2.5900 8.5440 6.1583 19 6 1.4640 8.6237 7.9797 20 7 1.4306 9.9391 8.0128 21 14 0.6381 7.6340 9.3318 22 1 1.6105 7.3826 10.4256 23 1 -0.5206 8.3947 9.8646 24 1 0.1679 6.3380 8.7799 25 6 6.0477 1.5256 2.4313 26 6 6.1720 3.0410 2.2541 27 1 -0.5400 -0.9309 0.0912 28 1 -0.5400 0.9308 -0.0914 29 1 1.8500 -0.9353 0.0004 30 1 3.5456 0.6188 -1.4046 31 1 2.1455 1.4271 -2.1492 32 1 3.3856 2.3893 -1.3104 33 1 0.4172 2.4831 -0.7369 34 1 0.4787 2.3332 1.0356 35 1 2.4885 3.7733 1.0965 36 1 2.4535 3.9080 -0.6781 37 1 1.1391 4.6122 0.2939 38 1 3.9614 3.0237 0.5944 39 1 4.7001 2.1771 4.5865 40 1 3.1173 2.1428 3.7728 41 1 4.3188 4.6958 3.4156 42 1 4.0810 6.4239 5.4699 43 1 2.5665 6.4103 4.5349 44 1 0.9773 10.3946 8.7394 45 1 6.3761 1.1009 3.3800 46 1 6.2143 0.9011 1.5536 47 1 6.4203 3.4126 1.2599 48 1 6.5820 3.6136 3.0860 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001705249322.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:23 Heat of formation + Delta-G solvation = -50.277069 kcal Electronic energy + Delta-G solvation = -27762.385612 eV Core-core repulsion = 23944.162952 eV Total energy + Delta-G solvation = -3818.222659 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.82383 -40.66140 -38.97963 -37.50167 -35.30183 -34.67056 -34.29662 -32.27789 -31.36415 -30.52710 -27.98433 -27.49327 -26.13918 -24.04578 -23.66650 -22.63293 -21.75444 -20.84274 -19.93081 -19.66178 -18.12450 -17.69582 -17.57962 -17.14917 -16.97667 -16.70403 -16.35004 -16.28796 -15.76569 -15.65771 -15.48734 -14.92888 -14.67690 -14.51548 -14.47625 -14.29019 -13.68439 -13.48512 -13.42711 -13.35199 -13.28772 -13.01771 -12.99580 -12.70064 -12.66837 -12.45876 -12.30078 -11.93613 -11.85967 -11.69431 -11.57892 -11.41746 -11.17533 -11.06801 -10.72965 -10.52767 -10.30977 -10.19128 -10.00551 -9.00203 -8.51859 -6.22332 0.97586 1.24342 1.30393 1.45909 1.53238 1.54285 1.59000 2.09149 2.09893 2.24615 2.68107 2.82458 2.86573 3.42134 3.54415 3.66279 3.71903 3.81887 3.90587 3.95871 4.04337 4.22656 4.35673 4.40032 4.43594 4.45793 4.48008 4.57156 4.64669 4.72552 4.75217 4.80389 4.86862 4.96520 5.02908 5.08371 5.11940 5.16734 5.27451 5.30676 5.37872 5.48843 5.66334 5.71016 5.78313 6.11666 6.42927 6.48762 6.93918 7.16598 7.23236 8.60394 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014653 B = 0.002588 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.377816 B =10816.528006 C =11551.680572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.144 4.144 3 C -0.047 4.047 4 C -0.136 4.136 5 C -0.113 4.113 6 C -0.179 4.179 7 C 0.525 3.475 8 O -0.571 6.571 9 N -0.683 5.683 10 C 0.064 3.936 11 C 0.161 3.839 12 N -0.703 5.703 13 C 0.532 3.468 14 O -0.567 6.567 15 C -0.107 4.107 16 S -0.182 6.182 17 C -0.525 4.525 18 H 0.066 0.934 19 C 0.047 3.953 20 N -0.916 5.916 21 Si 0.911 3.089 22 H -0.263 1.263 23 H -0.259 1.259 24 H -0.240 1.240 25 C -0.162 4.162 26 C -0.135 4.135 27 H 0.105 0.895 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.419 0.581 39 H 0.068 0.932 40 H 0.044 0.956 41 H 0.418 0.582 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.277 0.723 45 H 0.100 0.900 46 H 0.105 0.895 47 H 0.132 0.868 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.367 -16.048 -25.658 31.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.162 4.162 3 C -0.050 4.050 4 C -0.193 4.193 5 C -0.150 4.150 6 C -0.236 4.236 7 C 0.313 3.687 8 O -0.449 6.449 9 N -0.338 5.338 10 C -0.024 4.024 11 C 0.036 3.964 12 N -0.357 5.357 13 C 0.318 3.682 14 O -0.445 6.445 15 C -0.258 4.258 16 S 0.045 5.955 17 C -0.673 4.673 18 H 0.084 0.916 19 C -0.158 4.158 20 N -0.554 5.554 21 Si 0.733 3.267 22 H -0.187 1.187 23 H -0.183 1.183 24 H -0.164 1.164 25 C -0.200 4.200 26 C -0.172 4.172 27 H 0.124 0.876 28 H 0.130 0.870 29 H 0.121 0.879 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.261 0.739 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.255 0.745 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.086 0.914 45 H 0.118 0.882 46 H 0.123 0.877 47 H 0.150 0.850 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.519 -17.824 -23.734 30.620 hybrid contribution 0.027 1.295 -0.328 1.336 sum 7.546 -16.529 -24.062 30.152 Atomic orbital electron populations 1.24129 0.95787 1.03145 0.99598 1.22568 0.96105 0.96771 1.00802 1.19946 0.94839 0.95518 0.94677 1.21911 1.00279 1.03238 0.93883 1.21644 0.97400 0.93139 1.02840 1.22311 1.01597 0.96426 1.03278 1.20950 0.80589 0.80601 0.86555 1.90704 1.71121 1.38456 1.44647 1.45679 1.36926 1.27961 1.23250 1.20628 0.85474 1.10339 0.85987 1.20801 1.00043 0.80817 0.94757 1.45671 1.56398 1.08134 1.25519 1.20083 0.77320 0.89719 0.81063 1.90709 1.49375 1.57081 1.47346 1.23241 1.05398 0.95591 1.01539 1.84841 1.71866 1.07210 1.31621 1.22436 1.41109 0.90059 1.13649 0.91609 1.25508 0.95416 0.95463 0.99432 1.70004 1.43208 1.08375 1.33815 0.85913 0.79773 0.80687 0.80290 1.18741 1.18325 1.16371 1.23403 0.97569 0.94661 1.04400 1.23526 0.92302 0.95377 1.06016 0.87639 0.87030 0.87918 0.92090 0.89831 0.89767 0.88470 0.93538 0.92165 0.89282 0.91933 0.73927 0.91360 0.93716 0.74463 0.86339 0.86642 0.91367 0.88163 0.87674 0.84980 0.86428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.08 13.66 67.78 0.93 -2.15 16 2 C -0.14 -2.58 8.01 25.65 0.21 -2.37 16 3 C -0.05 -0.69 0.72 -53.68 -0.04 -0.73 16 4 C -0.14 -1.09 8.01 71.98 0.58 -0.51 16 5 C -0.11 -1.54 3.65 30.59 0.11 -1.43 16 6 C -0.18 -1.95 8.29 71.98 0.60 -1.35 16 7 C 0.53 10.75 5.97 87.66 0.52 11.27 16 8 O -0.57 -17.37 15.18 -3.02 -0.05 -17.42 16 9 N -0.68 -9.65 3.75 -422.92 -1.58 -11.24 16 10 C 0.06 1.02 1.80 3.60 0.01 1.02 16 11 C 0.16 3.96 5.65 86.38 0.49 4.45 16 12 N -0.70 -16.64 5.46 -463.05 -2.53 -19.17 16 13 C 0.53 18.60 7.85 87.66 0.69 19.29 16 14 O -0.57 -25.55 15.86 -3.02 -0.05 -25.60 16 15 C -0.11 -3.94 6.16 71.24 0.44 -3.50 16 16 S -0.18 -9.24 18.55 -56.49 -1.05 -10.29 16 17 C -0.52 -30.31 10.04 67.95 0.68 -29.63 16 18 H 0.07 3.96 8.03 -2.91 -0.02 3.94 16 19 C 0.05 2.77 5.50 84.86 0.47 3.24 16 20 N -0.92 -55.49 13.97 21.65 0.30 -55.19 16 21 Si 0.91 45.31 27.74 68.60 1.90 47.21 16 22 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.24 -12.02 6.74 99.48 0.67 -11.35 16 25 C -0.16 -2.19 10.11 30.62 0.31 -1.88 16 26 C -0.13 -1.15 9.72 30.62 0.30 -0.86 16 27 H 0.11 1.55 8.06 -2.91 -0.02 1.53 16 28 H 0.11 1.58 5.77 -2.91 -0.02 1.56 16 29 H 0.10 1.99 8.06 -2.91 -0.02 1.97 16 30 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.08 0.31 5.53 -2.39 -0.01 0.30 16 33 H 0.10 0.97 7.38 -2.39 -0.02 0.96 16 34 H 0.05 0.89 7.62 -2.39 -0.02 0.87 16 35 H 0.06 0.80 5.31 -2.39 -0.01 0.79 16 36 H 0.09 0.44 6.32 -2.39 -0.02 0.43 16 37 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.42 3.29 5.46 -92.71 -0.51 2.78 16 39 H 0.07 1.80 7.89 -2.39 -0.02 1.78 16 40 H 0.04 1.47 7.09 -2.38 -0.02 1.46 16 41 H 0.42 6.59 8.16 -92.71 -0.76 5.83 16 42 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 43 H 0.12 3.85 8.14 -2.40 -0.02 3.83 16 44 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 45 H 0.10 1.47 8.04 -2.38 -0.02 1.45 16 46 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.13 0.44 8.14 -2.38 -0.02 0.42 16 48 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -82.00 398.73 2.90 -79.10 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -0.32 Total: 17.74 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 6.28 Total: -5.15 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -3.81 Total: -85.60 kcal Atomic # 8 Polarization: -42.92 SS G_CDS: -0.09 Total: -43.02 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.90 Total: 47.21 kcal Atomic # 16 Polarization: -9.24 SS G_CDS: -1.05 Total: -10.29 kcal Total: -82.00 2.90 -79.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705249322.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.820 kcal (2) G-P(sol) polarization free energy of solvation -82.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds