Wall clock time and date at job start Sat Apr 11 2020 06:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50692 * 120.00757 * 2 1 4 4 C 1.52995 * 109.47714 * 124.99676 * 3 2 1 5 5 C 1.52995 * 109.47598 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.47474 * 180.02562 * 5 4 3 7 7 C 1.48045 * 111.00319 * 169.99909 * 6 5 4 8 8 C 1.53456 * 86.15706 * 222.78246 * 7 6 5 9 9 C 1.48285 * 111.08097 * 70.61250 * 6 5 4 10 10 C 1.52901 * 113.51320 * 137.74099 * 8 7 6 11 11 N 1.47333 * 108.05025 * 83.01953 * 10 8 7 12 12 C 1.34782 * 121.04634 * 228.42462 * 11 10 8 13 13 O 1.21276 * 119.99902 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99844 * 180.02562 * 12 11 10 15 15 S 1.80998 * 109.47011 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99823 * 179.97438 * 15 14 12 17 17 H 1.07994 * 120.00064 * 359.97438 * 16 15 14 18 18 C 1.38801 * 120.00174 * 179.97438 * 16 15 14 19 19 N 1.31634 * 119.99653 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00527 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46624 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47255 * 120.00130 * 20 18 16 23 23 H 1.48497 * 109.47122 * 240.00459 * 20 18 16 24 24 C 1.47120 * 117.90313 * 48.40880 * 11 10 8 25 25 C 1.53234 * 108.70637 * 307.75445 * 24 11 10 26 26 O 1.42493 * 113.76986 * 268.76791 * 8 7 6 27 27 H 1.07994 * 120.00462 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99492 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99492 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.46905 * 4.99828 * 3 2 1 31 31 H 1.09001 * 109.47378 * 245.00724 * 3 2 1 32 32 H 1.09007 * 109.46810 * 60.00094 * 4 3 2 33 33 H 1.08998 * 109.46906 * 300.00596 * 4 3 2 34 34 H 1.08994 * 109.47577 * 59.99749 * 5 4 3 35 35 H 1.09004 * 109.46730 * 299.99933 * 5 4 3 36 36 H 1.09002 * 113.78555 * 108.44514 * 7 6 5 37 37 H 1.08998 * 113.78240 * 337.11526 * 7 6 5 38 38 H 1.09004 * 113.67944 * 22.86553 * 9 6 5 39 39 H 1.09001 * 113.95876 * 251.47059 * 9 6 5 40 40 H 1.08997 * 109.74205 * 202.65691 * 10 8 7 41 41 H 1.08997 * 109.74382 * 323.32810 * 10 8 7 42 42 H 1.09008 * 109.46761 * 300.00220 * 14 12 11 43 43 H 1.09000 * 109.47215 * 59.99971 * 14 12 11 44 44 H 0.97003 * 120.00207 * 179.97438 * 19 18 16 45 45 H 1.08998 * 109.60145 * 67.52494 * 24 11 10 46 46 H 1.08998 * 109.60187 * 187.99117 * 24 11 10 47 47 H 1.08997 * 109.49109 * 174.10708 * 25 24 11 48 48 H 1.08998 * 109.48892 * 294.16118 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3049 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7998 2.6581 1.1819 6 7 4.7330 2.6847 2.3161 7 6 5.6562 3.8379 2.2167 8 6 6.7590 2.8597 2.6433 9 6 5.8573 1.7414 2.1040 10 6 8.0601 3.0272 1.8579 11 7 8.8285 4.1220 2.4756 12 6 9.3581 5.1088 1.7256 13 8 9.2051 5.1048 0.5226 14 6 10.1405 6.2170 2.3821 15 16 10.7159 7.3792 1.1194 16 6 11.5729 8.5356 2.1358 17 1 11.6135 8.3886 3.2049 18 6 12.1959 9.6354 1.5623 19 7 12.1459 9.8148 0.2592 20 14 13.1051 10.8610 2.6397 21 1 13.0143 10.4347 4.0593 22 1 14.5314 10.9171 2.2303 23 1 12.4926 12.2050 2.4858 24 6 8.9992 4.1045 3.9368 25 6 7.6214 3.9552 4.5907 26 8 6.9636 2.8039 4.0524 27 1 -0.5400 -0.9352 0.0004 28 1 -0.5399 0.9354 -0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3588 2.1316 0.0895 31 1 2.6214 1.4025 -0.9314 32 1 3.7400 0.5063 1.0920 33 1 2.4773 1.2355 2.1129 34 1 3.0948 3.4845 1.2716 35 1 4.3576 2.7559 0.2505 36 1 5.4588 4.6232 2.9464 37 1 5.7753 4.2194 1.2027 38 1 6.0349 1.5006 1.0558 39 1 5.8214 0.8591 2.7431 40 1 8.6369 2.1032 1.8997 41 1 7.8348 3.2739 0.8204 42 1 9.5016 6.7407 3.0934 43 1 10.9982 5.7952 2.9061 44 1 12.5810 10.5836 -0.1416 45 1 9.6318 3.2636 4.2209 46 1 9.4592 5.0374 4.2624 47 1 7.7410 3.8356 5.6674 48 1 7.0242 4.8440 4.3874 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717217147.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:50 Heat of formation + Delta-G solvation = -19.867741 kcal Electronic energy + Delta-G solvation = -27145.529586 eV Core-core repulsion = 23328.625574 eV Total energy + Delta-G solvation = -3816.904012 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.26851 -39.24459 -37.61476 -36.14370 -34.68243 -32.79334 -32.46966 -30.84748 -29.52286 -28.08990 -26.62027 -26.27882 -25.46670 -23.86553 -23.10431 -21.26656 -20.13753 -19.80373 -19.19724 -17.80471 -16.90900 -16.89761 -16.47061 -16.11471 -15.70727 -15.38087 -15.17781 -15.05910 -14.84275 -14.38076 -14.29968 -14.07743 -13.95080 -13.51206 -13.38753 -13.17314 -12.81813 -12.62911 -12.56836 -12.16186 -12.04272 -11.95531 -11.68056 -11.51881 -11.39429 -11.10338 -11.06009 -11.05934 -10.94854 -10.81030 -10.69671 -10.10277 -9.84377 -9.68934 -9.47687 -9.13827 -9.11202 -8.47951 -8.28128 -6.55432 -6.25945 -3.97066 1.91241 2.75054 2.94012 3.18750 3.20335 3.22417 3.27917 3.50071 3.63184 4.14544 4.15764 4.28164 4.40014 4.61063 4.62907 4.75808 4.76643 4.86611 4.89868 4.98600 5.07149 5.09041 5.09530 5.15760 5.20759 5.25778 5.34049 5.35992 5.40102 5.45826 5.46784 5.51466 5.55065 5.59692 5.67480 5.73201 5.79162 5.80591 5.90707 6.03679 6.05489 6.25742 6.39954 6.40401 6.71435 6.94368 7.40925 7.55798 8.31072 8.43224 9.19589 10.81509 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020608 B = 0.002025 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.392368 B =13824.321524 C =14555.892363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C -0.095 4.095 4 C -0.109 4.109 5 C 0.017 3.983 6 N -0.469 5.469 7 C -0.015 4.015 8 C 0.078 3.922 9 C 0.022 3.978 10 C 0.099 3.901 11 N -0.622 5.622 12 C 0.538 3.462 13 O -0.515 6.515 14 C -0.151 4.151 15 S -0.060 6.060 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.073 3.927 25 C 0.046 3.954 26 O -0.343 6.343 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.268 0.732 45 H 0.077 0.923 46 H 0.100 0.900 47 H 0.109 0.891 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.119 -18.831 5.877 26.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.169 4.169 3 C -0.133 4.133 4 C -0.146 4.146 5 C -0.112 4.112 6 N -0.191 5.191 7 C -0.144 4.144 8 C 0.037 3.963 9 C -0.107 4.107 10 C -0.025 4.025 11 N -0.360 5.360 12 C 0.326 3.674 13 O -0.389 6.389 14 C -0.301 4.301 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.050 4.050 25 C -0.031 4.031 26 O -0.261 6.261 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.125 0.875 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.119 0.881 40 H 0.092 0.908 41 H 0.120 0.880 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.095 0.905 46 H 0.119 0.881 47 H 0.127 0.873 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.788 -18.924 4.601 26.376 hybrid contribution 1.285 1.116 1.224 2.096 sum -16.503 -17.808 5.825 24.968 Atomic orbital electron populations 1.23861 0.96007 1.01820 1.01726 1.22955 0.96030 0.98507 0.99400 1.20757 0.98278 0.95485 0.98801 1.21454 0.97795 0.96757 0.98638 1.22723 0.96784 0.98914 0.92734 1.68660 1.09000 1.03531 1.37925 1.24491 0.92107 0.95611 1.02201 1.22932 0.92987 0.97122 0.83291 1.24015 0.89130 0.97007 1.00544 1.22102 0.91256 0.90552 0.98594 1.48169 1.55309 1.25326 1.07167 1.20367 0.78409 0.81589 0.87040 1.90691 1.58269 1.75750 1.14165 1.23554 1.01776 0.99265 1.05541 1.85414 1.67783 1.22429 1.07714 1.22894 1.39198 1.10976 0.95304 0.90853 1.24996 0.95876 0.97312 0.95376 1.70027 1.41777 1.28820 1.09606 0.86110 0.79169 0.80204 0.79978 1.19593 1.20540 1.20543 1.22401 0.98076 1.04284 0.80285 1.23025 0.92082 0.89340 0.98648 1.87936 1.78489 1.40811 1.18879 0.88606 0.88617 0.87454 0.91393 0.90968 0.91823 0.90993 0.90415 0.93862 0.88879 0.90028 0.89676 0.88136 0.90753 0.87997 0.89231 0.89153 0.92199 0.90497 0.88138 0.87305 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.25 14.32 29.01 0.42 -0.83 16 2 C -0.15 -1.00 9.52 -36.03 -0.34 -1.34 16 3 C -0.10 -0.64 5.66 -27.89 -0.16 -0.79 16 4 C -0.11 -0.80 5.26 -26.74 -0.14 -0.94 16 5 C 0.02 0.15 4.82 -3.83 -0.02 0.13 16 6 N -0.47 -4.76 6.27 -239.60 -1.50 -6.26 16 7 C -0.02 -0.17 7.11 -2.96 -0.02 -0.19 16 8 C 0.08 0.85 1.21 -90.26 -0.11 0.74 16 9 C 0.02 0.20 6.52 -2.83 -0.02 0.18 16 10 C 0.10 1.19 5.78 -3.64 -0.02 1.17 16 11 N -0.62 -8.69 3.03 -172.44 -0.52 -9.21 16 12 C 0.54 9.94 7.73 -10.98 -0.08 9.86 16 13 O -0.51 -11.41 15.36 5.56 0.09 -11.32 16 14 C -0.15 -2.98 4.52 36.01 0.16 -2.82 16 15 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 16 C -0.54 -15.00 9.50 30.94 0.29 -14.71 16 17 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -25.85 13.22 55.49 0.73 -25.12 16 20 Si 0.92 21.12 29.55 -169.99 -5.02 16.10 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 C 0.07 0.78 6.50 -3.58 -0.02 0.76 16 25 C 0.05 0.45 6.88 37.28 0.26 0.71 16 26 O -0.34 -3.90 10.52 -35.23 -0.37 -4.27 16 27 H 0.10 0.51 8.06 -52.49 -0.42 0.09 16 28 H 0.10 0.57 7.84 -52.49 -0.41 0.16 16 29 H 0.11 0.64 8.06 -52.49 -0.42 0.22 16 30 H 0.07 0.45 7.79 -51.93 -0.40 0.04 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.45 7.55 -51.93 -0.39 0.06 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.04 0.36 7.70 -51.93 -0.40 -0.04 16 36 H 0.09 1.09 7.27 -51.93 -0.38 0.71 16 37 H 0.08 0.94 7.59 -51.93 -0.39 0.55 16 38 H 0.09 0.66 7.73 -51.93 -0.40 0.25 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.10 1.35 6.91 -51.93 -0.36 0.99 16 42 H 0.09 1.62 7.69 -51.91 -0.40 1.22 16 43 H 0.09 1.65 7.99 -51.92 -0.41 1.24 16 44 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.10 1.04 6.03 -51.93 -0.31 0.73 16 47 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.06 0.60 7.19 -51.93 -0.37 0.23 16 LS Contribution 399.18 15.07 6.02 6.02 Total: -1.00 -33.73 399.18 -10.69 -44.42 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -7.99 Total: -0.43 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 0.10 Total: -6.11 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: -1.29 Total: -40.59 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.29 Total: -15.59 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.73 -10.69 -44.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717217147.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.551 kcal (2) G-P(sol) polarization free energy of solvation -33.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds