Wall clock time and date at job start Sat Apr 11 2020 06:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 109.47022 * 2 1 4 4 C 1.32990 * 120.00068 * 124.09728 * 3 2 1 5 5 C 1.50699 * 120.00314 * 6.24246 * 4 3 2 6 6 C 1.47104 * 119.99956 * 186.24403 * 4 3 2 7 7 O 1.21608 * 120.00223 * 359.97438 * 6 4 3 8 8 N 1.34776 * 120.00144 * 179.97438 * 6 4 3 9 9 C 1.46499 * 120.00171 * 180.02562 * 8 6 4 10 10 C 1.53001 * 109.47125 * 180.02562 * 9 8 6 11 11 C 1.53781 * 113.61514 * 175.00104 * 10 9 8 12 12 C 1.53781 * 87.08265 * 139.97213 * 11 10 9 13 13 N 1.46499 * 113.61017 * 89.11783 * 12 11 10 14 14 C 1.34780 * 120.00071 * 156.53211 * 13 12 11 15 15 O 1.21279 * 119.99700 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99752 * 179.97438 * 14 13 12 17 17 S 1.81004 * 109.46634 * 179.97438 * 16 14 13 18 18 C 1.76199 * 99.99721 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00266 * 0.02562 * 18 17 16 20 20 C 1.38802 * 119.99804 * 180.02562 * 18 17 16 21 21 N 1.31629 * 120.00060 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99968 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47236 * 90.00035 * 22 20 18 24 24 H 1.48504 * 109.47189 * 210.00397 * 22 20 18 25 25 H 1.48504 * 109.46950 * 329.99755 * 22 20 18 26 26 C 1.53777 * 87.17491 * 334.52372 * 12 11 10 27 27 H 1.09003 * 109.46670 * 300.00628 * 1 2 3 28 28 H 1.08998 * 109.46776 * 59.99831 * 1 2 3 29 29 H 1.08994 * 109.47159 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46913 * 239.99627 * 2 1 3 31 31 H 1.08999 * 109.46859 * 119.99621 * 2 1 3 32 32 H 1.08002 * 119.99760 * 304.08916 * 3 2 1 33 33 H 1.08996 * 109.47330 * 268.04909 * 5 4 3 34 34 H 1.09003 * 109.47157 * 28.04509 * 5 4 3 35 35 H 1.09002 * 109.47614 * 148.04465 * 5 4 3 36 36 H 0.97004 * 119.99590 * 0.02562 * 8 6 4 37 37 H 1.08994 * 109.47064 * 59.99725 * 9 8 6 38 38 H 1.09002 * 109.47027 * 300.00109 * 9 8 6 39 39 H 1.08989 * 112.85557 * 43.79709 * 10 9 8 40 40 H 1.09003 * 113.61261 * 25.42774 * 11 10 9 41 41 H 1.08999 * 113.61327 * 254.52470 * 11 10 9 42 42 H 1.08999 * 113.61531 * 219.92754 * 12 11 10 43 43 H 0.97005 * 119.99948 * 336.52659 * 13 12 11 44 44 H 1.08997 * 109.46997 * 299.99617 * 16 14 13 45 45 H 1.08999 * 109.47238 * 59.99871 * 16 14 13 46 46 H 0.97000 * 119.99896 * 180.02562 * 21 20 18 47 47 H 1.09000 * 113.61631 * 140.01615 * 26 12 11 48 48 H 1.08991 * 113.61940 * 270.92382 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8628 1.8326 0.9537 5 6 3.4124 0.8462 1.9517 6 6 3.2447 3.2508 1.0345 7 8 2.8015 4.0468 0.2289 8 7 4.0858 3.6682 2.0013 9 6 4.4657 5.0808 2.0821 10 6 5.4220 5.2852 3.2588 11 6 5.9786 6.7153 3.3591 12 6 5.8048 6.5920 4.8821 13 7 6.9759 6.0342 5.5630 14 6 7.1808 6.2903 6.8703 15 8 6.3959 6.9830 7.4827 16 6 8.3851 5.7160 7.5709 17 16 8.3799 6.2367 9.3044 18 6 9.8512 5.4462 9.8657 19 1 10.4428 4.8571 9.1806 20 6 10.2499 5.5807 11.1884 21 7 9.5286 6.2983 12.0235 22 14 11.8101 4.7432 11.7833 23 1 12.9640 5.6601 11.6020 24 1 11.6707 4.4013 13.2217 25 1 12.0357 3.5024 10.9992 26 6 4.7062 5.5546 4.5962 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.7181 2.1047 -0.7746 33 1 2.7630 0.8143 2.8265 34 1 3.4583 -0.1434 1.4971 35 1 4.4136 1.1542 2.2535 36 1 4.4396 3.0333 2.6437 37 1 3.5734 5.6892 2.2287 38 1 4.9599 5.3776 1.1570 39 1 6.1887 4.5130 3.3204 40 1 5.3334 7.4677 2.9055 41 1 7.0184 6.8022 3.0439 42 1 5.4342 7.5017 5.3543 43 1 7.6037 5.4804 5.0731 44 1 8.3516 4.6278 7.5179 45 1 9.2930 6.0756 7.0866 46 1 9.8075 6.3925 12.9478 47 1 4.7195 4.7051 5.2790 48 1 3.7139 5.9902 4.4802 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718062013.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:08 Heat of formation + Delta-G solvation = -55.599770 kcal Electronic energy + Delta-G solvation = -25703.118139 eV Core-core repulsion = 21884.664670 eV Total energy + Delta-G solvation = -3818.453469 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.53350 -39.84400 -38.17819 -36.57379 -35.01174 -33.09775 -32.45088 -32.17580 -29.47554 -27.91449 -27.40849 -25.98364 -25.51466 -24.62573 -22.83367 -21.47092 -20.84375 -19.61316 -18.71452 -17.88765 -17.49534 -16.63314 -16.35139 -16.10766 -15.74910 -15.15865 -15.05371 -14.85698 -14.81903 -14.49050 -14.32744 -14.06281 -13.86769 -13.55162 -13.20510 -13.10873 -13.03495 -12.74899 -12.63934 -12.55363 -12.33222 -12.24753 -11.82823 -11.78083 -11.31835 -11.30529 -11.08573 -11.04800 -10.86775 -10.78622 -10.52926 -10.13677 -9.83589 -9.55357 -9.45087 -9.29543 -9.09268 -8.91832 -8.26458 -6.52688 -6.23932 -3.94766 0.96667 2.83307 2.95664 2.97714 3.02711 3.20577 3.25950 3.29586 3.65670 4.15070 4.18056 4.20430 4.34108 4.41727 4.45897 4.57010 4.65518 4.67925 4.79298 4.88917 5.01463 5.09662 5.09977 5.11410 5.19753 5.27080 5.36825 5.39312 5.45604 5.46113 5.47757 5.50499 5.55073 5.68089 5.76286 5.79241 5.80932 5.85622 5.99775 6.01130 6.06434 6.10042 6.14976 6.66019 7.17191 7.57159 7.66281 7.89926 8.32770 8.57131 9.21409 10.83474 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016806 B = 0.001627 C = 0.001532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.653333 B =17201.125212 C =18275.538336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.068 4.068 4 C -0.191 4.191 5 C -0.121 4.121 6 C 0.552 3.448 7 O -0.547 6.547 8 N -0.724 5.724 9 C 0.130 3.870 10 C -0.126 4.126 11 C -0.135 4.135 12 C 0.124 3.876 13 N -0.722 5.722 14 C 0.534 3.466 15 O -0.515 6.515 16 C -0.154 4.154 17 S -0.059 6.059 18 C -0.537 4.537 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.148 4.148 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.126 0.874 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.402 0.598 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.103 0.897 43 H 0.398 0.602 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.269 0.731 47 H 0.074 0.926 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.689 -11.370 -25.461 30.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C -0.088 4.088 4 C -0.194 4.194 5 C -0.177 4.177 6 C 0.341 3.659 7 O -0.426 6.426 8 N -0.376 5.376 9 C 0.006 3.994 10 C -0.145 4.145 11 C -0.174 4.174 12 C 0.018 3.982 13 N -0.375 5.375 14 C 0.320 3.680 15 O -0.388 6.388 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.186 4.186 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.144 0.856 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.237 0.763 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.096 0.904 42 H 0.121 0.879 43 H 0.232 0.768 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.092 0.908 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.321 -9.540 -24.783 30.171 hybrid contribution 2.451 -1.886 -0.268 3.104 sum -11.871 -11.425 -25.051 29.983 Atomic orbital electron populations 1.21690 0.94242 1.02102 1.02448 1.20894 0.96739 0.93582 1.03460 1.23610 0.92197 0.97353 0.95652 1.21425 1.03354 0.93555 1.01044 1.20874 1.00764 0.98062 0.98031 1.18411 0.78366 0.88466 0.80678 1.90786 1.54736 1.55956 1.41161 1.45955 1.48319 1.10654 1.32649 1.21402 0.98164 0.81535 0.98273 1.22933 0.98338 0.98527 0.94706 1.23289 1.02229 0.96087 0.95772 1.21694 0.86682 0.97657 0.92157 1.45715 1.26674 1.54491 1.10652 1.20340 0.86673 0.79889 0.81067 1.90705 1.46285 1.36975 1.64868 1.23535 0.97815 1.03881 1.05197 1.85415 1.34164 1.67485 0.96225 1.22868 1.10456 1.36848 0.98319 0.90929 1.24990 0.97727 0.95229 0.95591 1.70016 1.37738 1.37456 1.05032 0.86168 0.81842 0.79480 0.78007 1.20254 1.20734 1.19717 1.23588 0.98674 1.00349 0.96036 0.92383 0.92328 0.92060 0.90228 0.90255 0.85626 0.90895 0.90606 0.91599 0.76267 0.91091 0.91314 0.88588 0.88455 0.90423 0.87878 0.76839 0.89234 0.89193 0.92158 0.90750 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.90 37.16 0.37 -0.28 16 2 C -0.11 -0.51 6.03 -27.88 -0.17 -0.67 16 3 C -0.07 -0.48 9.08 -36.13 -0.33 -0.81 16 4 C -0.19 -1.44 5.99 -102.85 -0.62 -2.05 16 5 C -0.12 -0.58 8.73 36.01 0.31 -0.27 16 6 C 0.55 5.55 7.75 -12.66 -0.10 5.45 16 7 O -0.55 -7.56 16.23 5.27 0.09 -7.47 16 8 N -0.72 -5.63 5.50 -61.49 -0.34 -5.96 16 9 C 0.13 1.01 5.51 -4.04 -0.02 0.99 16 10 C -0.13 -0.87 3.65 -89.66 -0.33 -1.19 16 11 C -0.14 -1.00 7.38 -25.92 -0.19 -1.19 16 12 C 0.12 1.33 4.30 -67.12 -0.29 1.04 16 13 N -0.72 -8.87 5.26 -53.02 -0.28 -9.15 16 14 C 0.53 9.55 7.85 -10.98 -0.09 9.47 16 15 O -0.51 -11.39 15.48 5.56 0.09 -11.31 16 16 C -0.15 -3.00 6.16 36.01 0.22 -2.77 16 17 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 18 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 19 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -25.93 13.22 55.49 0.73 -25.20 16 22 Si 0.92 21.16 29.55 -169.99 -5.02 16.13 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 C -0.15 -1.32 7.45 -25.77 -0.19 -1.51 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.31 5.61 -51.93 -0.29 0.02 16 32 H 0.13 1.03 7.51 -52.49 -0.39 0.63 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.29 6.27 -51.93 -0.33 -0.04 16 35 H 0.07 0.27 6.80 -51.93 -0.35 -0.09 16 36 H 0.40 2.30 6.62 -40.82 -0.27 2.03 16 37 H 0.07 0.62 7.85 -51.93 -0.41 0.21 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.64 8.10 -51.93 -0.42 0.22 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.10 1.33 7.50 -51.93 -0.39 0.94 16 43 H 0.40 3.71 8.70 -40.82 -0.36 3.36 16 44 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 45 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 46 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.09 0.78 7.90 -51.93 -0.41 0.37 16 LS Contribution 410.43 15.07 6.19 6.19 Total: -1.00 -36.24 410.43 -9.79 -46.03 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.81 Total: 1.16 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -1.22 Total: -6.62 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.12 Total: -40.31 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.17 Total: -18.78 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.24 -9.79 -46.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718062013.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.568 kcal (2) G-P(sol) polarization free energy of solvation -36.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds