Wall clock time and date at job start Sat Apr 11 2020 06:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 109.47022 * 2 1 4 4 C 1.32990 * 120.00068 * 124.09728 * 3 2 1 5 5 C 1.50699 * 120.00314 * 6.24246 * 4 3 2 6 6 C 1.47104 * 119.99956 * 186.24403 * 4 3 2 7 7 O 1.21608 * 120.00223 * 359.97438 * 6 4 3 8 8 N 1.34776 * 120.00144 * 179.97438 * 6 4 3 9 9 C 1.46499 * 120.00171 * 180.02562 * 8 6 4 10 10 C 1.53001 * 109.47125 * 180.02562 * 9 8 6 11 11 C 1.53781 * 113.61514 * 175.00104 * 10 9 8 12 12 C 1.53781 * 87.08265 * 139.97213 * 11 10 9 13 13 N 1.46499 * 113.61017 * 89.11783 * 12 11 10 14 14 C 1.34780 * 120.00071 * 156.53211 * 13 12 11 15 15 O 1.21279 * 119.99700 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99752 * 179.97438 * 14 13 12 17 17 S 1.81004 * 109.46634 * 179.97438 * 16 14 13 18 18 C 1.76199 * 99.99721 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00266 * 0.02562 * 18 17 16 20 20 C 1.38802 * 119.99804 * 180.02562 * 18 17 16 21 21 N 1.31629 * 120.00060 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99968 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47236 * 90.00035 * 22 20 18 24 24 H 1.48504 * 109.47189 * 210.00397 * 22 20 18 25 25 H 1.48504 * 109.46950 * 329.99755 * 22 20 18 26 26 C 1.53777 * 87.17491 * 334.52372 * 12 11 10 27 27 H 1.09003 * 109.46670 * 300.00628 * 1 2 3 28 28 H 1.08998 * 109.46776 * 59.99831 * 1 2 3 29 29 H 1.08994 * 109.47159 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46913 * 239.99627 * 2 1 3 31 31 H 1.08999 * 109.46859 * 119.99621 * 2 1 3 32 32 H 1.08002 * 119.99760 * 304.08916 * 3 2 1 33 33 H 1.08996 * 109.47330 * 268.04909 * 5 4 3 34 34 H 1.09003 * 109.47157 * 28.04509 * 5 4 3 35 35 H 1.09002 * 109.47614 * 148.04465 * 5 4 3 36 36 H 0.97004 * 119.99590 * 0.02562 * 8 6 4 37 37 H 1.08994 * 109.47064 * 59.99725 * 9 8 6 38 38 H 1.09002 * 109.47027 * 300.00109 * 9 8 6 39 39 H 1.08989 * 112.85557 * 43.79709 * 10 9 8 40 40 H 1.09003 * 113.61261 * 25.42774 * 11 10 9 41 41 H 1.08999 * 113.61327 * 254.52470 * 11 10 9 42 42 H 1.08999 * 113.61531 * 219.92754 * 12 11 10 43 43 H 0.97005 * 119.99948 * 336.52659 * 13 12 11 44 44 H 1.08997 * 109.46997 * 299.99617 * 16 14 13 45 45 H 1.08999 * 109.47238 * 59.99871 * 16 14 13 46 46 H 0.97000 * 119.99896 * 180.02562 * 21 20 18 47 47 H 1.09000 * 113.61631 * 140.01615 * 26 12 11 48 48 H 1.08991 * 113.61940 * 270.92382 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8628 1.8326 0.9537 5 6 3.4124 0.8462 1.9517 6 6 3.2447 3.2508 1.0345 7 8 2.8015 4.0468 0.2289 8 7 4.0858 3.6682 2.0013 9 6 4.4657 5.0808 2.0821 10 6 5.4220 5.2852 3.2588 11 6 5.9786 6.7153 3.3591 12 6 5.8048 6.5920 4.8821 13 7 6.9759 6.0342 5.5630 14 6 7.1808 6.2903 6.8703 15 8 6.3959 6.9830 7.4827 16 6 8.3851 5.7160 7.5709 17 16 8.3799 6.2367 9.3044 18 6 9.8512 5.4462 9.8657 19 1 10.4428 4.8571 9.1806 20 6 10.2499 5.5807 11.1884 21 7 9.5286 6.2983 12.0235 22 14 11.8101 4.7432 11.7833 23 1 12.9640 5.6601 11.6020 24 1 11.6707 4.4013 13.2217 25 1 12.0357 3.5024 10.9992 26 6 4.7062 5.5546 4.5962 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.7181 2.1047 -0.7746 33 1 2.7630 0.8143 2.8265 34 1 3.4583 -0.1434 1.4971 35 1 4.4136 1.1542 2.2535 36 1 4.4396 3.0333 2.6437 37 1 3.5734 5.6892 2.2287 38 1 4.9599 5.3776 1.1570 39 1 6.1887 4.5130 3.3204 40 1 5.3334 7.4677 2.9055 41 1 7.0184 6.8022 3.0439 42 1 5.4342 7.5017 5.3543 43 1 7.6037 5.4804 5.0731 44 1 8.3516 4.6278 7.5179 45 1 9.2930 6.0756 7.0866 46 1 9.8075 6.3925 12.9478 47 1 4.7195 4.7051 5.2790 48 1 3.7139 5.9902 4.4802 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718062013.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:07 Heat of formation + Delta-G solvation = -80.574291 kcal Electronic energy + Delta-G solvation = -25704.201116 eV Core-core repulsion = 21884.664670 eV Total energy + Delta-G solvation = -3819.536446 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.40052 -40.76204 -39.33216 -37.09376 -35.85398 -34.58017 -34.21987 -32.66275 -30.82930 -28.77323 -27.85250 -27.64082 -26.68023 -25.18958 -23.56577 -22.22477 -21.97387 -20.45307 -19.82148 -19.36973 -18.14582 -17.79994 -17.26934 -17.10216 -16.86950 -16.57584 -16.38612 -16.02130 -15.68331 -15.43404 -15.11033 -14.94180 -14.68752 -14.59739 -14.48324 -14.01098 -13.82507 -13.58976 -13.48564 -13.35875 -13.15619 -13.01234 -12.90635 -12.84807 -12.68212 -12.60310 -12.22406 -11.98508 -11.74145 -11.71412 -11.62203 -11.26674 -11.13523 -10.95374 -10.88123 -10.26188 -10.23170 -10.03964 -9.85573 -8.65804 -8.33878 -6.11922 0.36396 1.27842 1.43283 1.48145 1.58159 1.61050 2.17838 2.25425 2.27776 2.29799 3.00499 3.32948 3.47894 3.53017 3.76678 3.78613 3.86901 3.94471 4.00120 4.16575 4.27995 4.28440 4.32707 4.43324 4.52253 4.55131 4.63227 4.70230 4.74912 4.80156 4.84473 4.84570 4.90136 5.04924 5.05314 5.08126 5.11778 5.13352 5.22321 5.33161 5.42741 5.43063 5.55822 5.59849 5.65651 6.20581 6.53241 6.53650 7.07607 7.20135 7.27605 8.75282 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016806 B = 0.001627 C = 0.001532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.653333 B =17201.125212 C =18275.538336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.068 4.068 4 C -0.201 4.201 5 C -0.118 4.118 6 C 0.544 3.456 7 O -0.595 6.595 8 N -0.713 5.713 9 C 0.131 3.869 10 C -0.105 4.105 11 C -0.120 4.120 12 C 0.107 3.893 13 N -0.693 5.693 14 C 0.536 3.464 15 O -0.566 6.566 16 C -0.129 4.129 17 S -0.154 6.154 18 C -0.546 4.546 19 H 0.084 0.916 20 C 0.014 3.986 21 N -0.912 5.912 22 Si 0.998 3.002 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.257 1.257 26 C -0.145 4.145 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.414 0.586 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.417 0.583 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.271 0.729 47 H 0.066 0.934 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.136 -13.870 -27.051 32.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 C -0.088 4.088 4 C -0.204 4.204 5 C -0.174 4.174 6 C 0.334 3.666 7 O -0.477 6.477 8 N -0.364 5.364 9 C 0.008 3.992 10 C -0.124 4.124 11 C -0.158 4.158 12 C 0.002 3.998 13 N -0.347 5.347 14 C 0.322 3.678 15 O -0.444 6.444 16 C -0.280 4.280 17 S 0.074 5.926 18 C -0.694 4.694 19 H 0.102 0.898 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.181 1.181 26 C -0.183 4.183 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.252 0.748 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.110 0.890 42 H 0.095 0.905 43 H 0.255 0.745 44 H 0.130 0.870 45 H 0.129 0.871 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.744 -12.079 -26.415 31.718 hybrid contribution 1.873 -1.076 0.090 2.162 sum -10.871 -13.155 -26.325 31.373 Atomic orbital electron populations 1.21703 0.94184 1.02794 1.01884 1.20931 0.96676 0.91967 1.04627 1.23752 0.91764 0.98433 0.94898 1.21544 1.03943 0.92740 1.02194 1.20917 1.01158 0.97868 0.97464 1.18907 0.78073 0.89317 0.80331 1.90758 1.56608 1.57339 1.43031 1.45897 1.47418 1.10926 1.32175 1.21358 0.97904 0.81450 0.98505 1.22818 0.97935 0.98812 0.92805 1.23248 1.03470 0.96666 0.92449 1.21900 0.86692 0.97319 0.93917 1.45398 1.27219 1.53390 1.08681 1.20085 0.85702 0.79457 0.82566 1.90696 1.47807 1.39477 1.66423 1.23372 0.99656 1.05112 0.99890 1.85614 1.35015 1.68880 1.03131 1.23216 1.10451 1.36788 0.98973 0.89805 1.26120 1.01492 0.95770 0.95720 1.70185 1.39980 1.39184 1.05461 0.84958 0.76902 0.78699 0.77447 1.19376 1.20397 1.18093 1.23560 0.98393 0.99345 0.97038 0.93188 0.92724 0.90707 0.89029 0.88986 0.87562 0.90347 0.89217 0.90625 0.74846 0.92172 0.91446 0.86697 0.87444 0.88956 0.90529 0.74546 0.87021 0.87141 0.92027 0.91480 0.88913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.90 71.98 0.71 -0.42 16 2 C -0.11 -0.79 6.03 29.85 0.18 -0.61 16 3 C -0.07 -0.93 9.08 24.52 0.22 -0.70 16 4 C -0.20 -2.82 5.99 -18.70 -0.11 -2.93 16 5 C -0.12 -0.85 8.73 71.24 0.62 -0.23 16 6 C 0.54 10.66 7.75 86.57 0.67 11.33 16 7 O -0.59 -16.78 16.23 -4.06 -0.07 -16.85 16 8 N -0.71 -9.93 5.50 -466.72 -2.57 -12.49 16 9 C 0.13 1.82 5.51 86.38 0.48 2.30 16 10 C -0.11 -1.15 3.65 -10.17 -0.04 -1.19 16 11 C -0.12 -1.45 7.38 31.12 0.23 -1.22 16 12 C 0.11 2.14 4.30 45.52 0.20 2.34 16 13 N -0.69 -15.60 5.26 -440.04 -2.32 -17.92 16 14 C 0.54 18.81 7.85 87.66 0.69 19.49 16 15 O -0.57 -25.69 15.48 -3.03 -0.05 -25.74 16 16 C -0.13 -4.88 6.16 71.24 0.44 -4.44 16 17 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 18 C -0.55 -30.71 9.50 67.95 0.65 -30.06 16 19 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 20 C 0.01 0.77 5.49 84.86 0.47 1.24 16 21 N -0.91 -55.59 13.22 21.65 0.29 -55.30 16 22 Si 1.00 42.91 29.55 68.60 2.03 44.94 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 26 C -0.14 -2.35 7.45 31.22 0.23 -2.12 16 27 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.09 0.48 5.61 -2.39 -0.01 0.46 16 32 H 0.11 1.83 7.51 -2.91 -0.02 1.81 16 33 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.09 0.41 6.27 -2.39 -0.01 0.40 16 35 H 0.07 0.39 6.80 -2.39 -0.02 0.37 16 36 H 0.41 3.70 6.62 -92.71 -0.61 3.08 16 37 H 0.06 1.00 7.85 -2.39 -0.02 0.98 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.11 1.16 8.10 -2.39 -0.02 1.15 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 2.00 7.50 -2.39 -0.02 1.98 16 43 H 0.42 6.27 8.70 -92.70 -0.81 5.47 16 44 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 45 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 46 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 47 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.09 1.51 7.90 -2.39 -0.02 1.49 16 Total: -1.00 -82.82 410.43 1.34 -81.48 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -0.45 Total: 18.67 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 5.63 Total: -7.23 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -4.60 Total: -85.72 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -0.11 Total: -42.59 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -82.82 1.34 -81.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718062013.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.910 kcal (2) G-P(sol) polarization free energy of solvation -82.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds