Wall clock time and date at job start Sat Apr 11 2020 06:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46648 * 2 1 4 4 C 1.50706 * 115.55296 * 65.26169 * 3 2 1 5 5 O 1.21275 * 119.99840 * 209.99376 * 4 3 2 6 6 N 1.34777 * 119.99694 * 30.26716 * 4 3 2 7 7 C 1.46503 * 119.99922 * 184.97148 * 6 4 3 8 8 H 1.09008 * 110.88293 * 34.29929 * 7 6 4 9 9 C 1.55157 * 111.00576 * 158.17841 * 7 6 4 10 10 C 1.54322 * 102.94256 * 153.57985 * 9 7 6 11 11 H 1.08995 * 109.88832 * 97.22077 * 10 9 7 12 12 C 1.52998 * 109.87794 * 218.23730 * 10 9 7 13 13 N 1.47026 * 107.26927 * 337.80418 * 10 9 7 14 14 C 1.34774 * 125.64998 * 179.00006 * 13 10 9 15 15 O 1.21288 * 120.00037 * 359.97438 * 14 13 10 16 16 C 1.50694 * 120.00405 * 180.02562 * 14 13 10 17 17 S 1.80999 * 109.47343 * 180.02562 * 16 14 13 18 18 C 1.76206 * 100.00062 * 180.02562 * 17 16 14 19 19 H 1.08008 * 119.99750 * 359.97438 * 18 17 16 20 20 C 1.38792 * 119.99948 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00038 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 120.00245 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47025 * 90.00074 * 22 20 18 24 24 H 1.48494 * 109.47357 * 210.00219 * 22 20 18 25 25 H 1.48498 * 109.47013 * 330.00215 * 22 20 18 26 26 C 1.47474 * 108.72358 * 358.97867 * 13 10 9 27 27 C 1.53001 * 117.51613 * 210.95849 * 3 2 1 28 28 C 1.52993 * 60.00243 * 107.48384 * 27 3 2 29 29 H 1.08998 * 109.47306 * 294.97118 * 1 2 3 30 30 H 1.09004 * 109.46724 * 54.97542 * 1 2 3 31 31 H 1.09004 * 109.47047 * 174.97055 * 1 2 3 32 32 H 1.09000 * 109.46942 * 239.99981 * 2 1 3 33 33 H 1.09001 * 109.46713 * 119.99439 * 2 1 3 34 34 H 0.96999 * 120.00509 * 4.96574 * 6 4 3 35 35 H 1.09001 * 110.71843 * 271.94125 * 9 7 6 36 36 H 1.08995 * 110.71942 * 35.21020 * 9 7 6 37 37 H 1.08999 * 109.47752 * 59.99891 * 12 10 9 38 38 H 1.09004 * 109.46672 * 179.97438 * 12 10 9 39 39 H 1.08993 * 109.47225 * 299.99219 * 12 10 9 40 40 H 1.09009 * 109.46897 * 299.99841 * 16 14 13 41 41 H 1.09003 * 109.47172 * 59.99657 * 16 14 13 42 42 H 0.97000 * 120.00639 * 179.97438 * 21 20 18 43 43 H 1.08999 * 110.34751 * 265.25291 * 26 13 10 44 44 H 1.09000 * 110.40445 * 142.91468 * 26 13 10 45 45 H 1.08998 * 117.49757 * 214.97722 * 27 3 2 46 46 H 1.09004 * 117.49745 * 359.97438 * 27 3 2 47 47 H 1.09000 * 117.50158 * 252.51315 * 28 27 3 48 48 H 1.09003 * 117.50345 * 107.48653 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.7201 2.2450 1.2349 5 8 1.5701 3.4459 1.1556 6 7 1.6062 1.6289 2.4281 7 6 1.1889 2.3897 3.6085 8 1 0.4731 3.1659 3.3374 9 6 0.6055 1.4511 4.6976 10 6 0.8697 2.2304 6.0031 11 1 -0.0253 2.7799 6.2945 12 6 1.2699 1.2600 7.1163 13 7 1.9684 3.1701 5.7358 14 6 2.4847 4.0469 6.6196 15 8 2.0393 4.1057 7.7462 16 6 3.6145 4.9550 6.2079 17 16 4.0835 6.0062 7.6047 18 6 5.3833 6.9373 6.8641 19 1 5.6575 6.7579 5.8350 20 6 6.0547 7.9013 7.6033 21 7 7.0260 8.5964 7.0503 22 14 5.5799 8.2121 9.3831 23 1 6.3806 7.3305 10.2702 24 1 5.8460 9.6323 9.7256 25 1 4.1356 7.9205 9.5682 26 6 2.4128 2.9943 4.3406 27 6 3.3726 1.7212 -0.6980 28 6 2.0624 2.1839 -1.3382 29 1 -0.3634 0.4338 0.9316 30 1 -0.3633 0.5898 -0.8416 31 1 -0.3633 -1.0237 -0.0901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.8005 0.6817 2.5055 35 1 -0.4637 1.3029 4.5465 36 1 1.1309 0.4962 4.7053 37 1 2.1754 0.7273 6.8259 38 1 1.4552 1.8172 8.0346 39 1 0.4645 0.5445 7.2814 40 1 4.4710 4.3538 5.9025 41 1 3.2933 5.5796 5.3743 42 1 7.4950 9.2704 7.5667 43 1 3.2586 2.3083 4.2958 44 1 2.6797 3.9562 3.9028 45 1 4.0180 2.4849 -0.2641 46 1 3.8866 0.8766 -1.1571 47 1 1.7141 1.6439 -2.2186 48 1 1.8456 3.2521 -1.3254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718673690.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:25 Heat of formation + Delta-G solvation = -53.724317 kcal Electronic energy + Delta-G solvation = -27511.524896 eV Core-core repulsion = 23693.152752 eV Total energy + Delta-G solvation = -3818.372143 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.85565 -39.89885 -37.79581 -36.92205 -34.68621 -32.42165 -32.32348 -32.25505 -30.15724 -28.82630 -26.08487 -25.59567 -25.27717 -23.60525 -22.79327 -22.14344 -21.38003 -19.88915 -18.97413 -17.66079 -17.40725 -16.98999 -16.75110 -15.68245 -15.48229 -15.24911 -14.95700 -14.80222 -14.60367 -14.39505 -14.21182 -13.74406 -13.62468 -13.54613 -13.24317 -13.05373 -12.83270 -12.79075 -12.62739 -12.15635 -12.09591 -12.03588 -11.84793 -11.75477 -11.67907 -11.25525 -11.20281 -11.06722 -10.98878 -10.84029 -10.58471 -10.45444 -10.06297 -9.83795 -9.63347 -9.34311 -8.98199 -8.61262 -8.47841 -6.89722 -6.26427 -3.98168 2.16554 2.52028 2.79626 2.96014 3.23862 3.34663 3.41828 3.52269 3.62120 4.04827 4.11828 4.26843 4.32444 4.35209 4.38179 4.47403 4.58914 4.71763 4.82455 4.90002 4.96314 4.98880 5.06037 5.12472 5.15373 5.24807 5.29998 5.35055 5.40843 5.42743 5.43842 5.53557 5.54537 5.57933 5.60399 5.66270 5.77025 5.80220 5.81494 5.94643 6.05259 6.09473 6.18737 6.43057 7.12221 7.55487 7.89904 7.96714 8.44006 8.44835 9.19591 10.82898 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014034 B = 0.002636 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.662372 B =10620.849760 C =12297.014004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.084 4.084 3 C -0.167 4.167 4 C 0.553 3.447 5 O -0.530 6.530 6 N -0.717 5.717 7 C 0.134 3.866 8 H 0.106 0.894 9 C -0.133 4.133 10 C 0.139 3.861 11 H 0.079 0.921 12 C -0.162 4.162 13 N -0.619 5.619 14 C 0.550 3.450 15 O -0.514 6.514 16 C -0.119 4.119 17 S -0.142 6.142 18 C -0.520 4.520 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.091 3.909 27 C -0.148 4.148 28 C -0.142 4.142 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.402 0.598 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.271 0.729 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.102 0.898 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.578 -23.049 -15.904 31.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.121 4.121 3 C -0.171 4.171 4 C 0.339 3.661 5 O -0.405 6.405 6 N -0.369 5.369 7 C 0.028 3.972 8 H 0.124 0.876 9 C -0.171 4.171 10 C 0.035 3.965 11 H 0.097 0.903 12 C -0.221 4.221 13 N -0.357 5.357 14 C 0.339 3.661 15 O -0.388 6.388 16 C -0.269 4.269 17 S 0.085 5.915 18 C -0.667 4.667 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.034 4.034 27 C -0.186 4.186 28 C -0.179 4.179 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.238 0.762 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.197 -21.875 -14.199 29.692 hybrid contribution 0.773 -0.248 -0.609 1.015 sum -13.424 -22.123 -14.808 29.814 Atomic orbital electron populations 1.21782 0.94963 1.01871 1.02530 1.21065 0.96381 0.91920 1.02746 1.21554 1.05076 0.97173 0.93248 1.19521 0.75698 0.87358 0.83475 1.90751 1.49327 1.14449 1.86014 1.45797 1.70346 1.13187 1.07575 1.22082 0.96122 0.94698 0.84262 0.87569 1.23025 1.02402 0.98546 0.93128 1.21445 0.90565 0.90003 0.94514 0.90325 1.22140 1.01275 0.98865 0.99774 1.48467 1.36857 1.38241 1.12154 1.19957 0.83052 0.79039 0.84058 1.90691 1.60759 1.68057 1.19316 1.23274 0.98479 1.00365 1.04795 1.84736 1.46320 1.44167 1.16304 1.22310 1.18831 1.23474 1.02127 0.89404 1.24710 0.93712 0.94207 0.98688 1.69939 1.21585 1.22864 1.37340 0.86733 0.82071 0.78406 0.84633 1.19226 1.19941 1.15901 1.22666 0.96852 1.02359 0.81543 1.23082 0.89826 1.03697 1.01956 1.23023 1.00035 1.01621 0.93228 0.92511 0.92308 0.92269 0.90784 0.91335 0.76213 0.89291 0.89785 0.92538 0.90668 0.91868 0.88697 0.88505 0.91953 0.91099 0.89585 0.87968 0.87713 0.87955 0.87330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.72 37.16 0.36 -0.37 16 2 C -0.08 -0.37 5.45 -26.73 -0.15 -0.51 16 3 C -0.17 -1.17 2.04 -155.66 -0.32 -1.49 16 4 C 0.55 5.42 6.90 -10.98 -0.08 5.34 16 5 O -0.53 -7.54 16.01 5.56 0.09 -7.46 16 6 N -0.72 -5.31 5.07 -51.72 -0.26 -5.58 16 7 C 0.13 1.21 3.33 -65.78 -0.22 0.99 16 8 H 0.11 1.14 7.71 -51.92 -0.40 0.74 16 9 C -0.13 -0.93 6.11 -24.90 -0.15 -1.08 16 10 C 0.14 1.51 3.45 -66.95 -0.23 1.28 16 11 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 12 C -0.16 -1.75 9.10 37.16 0.34 -1.41 16 13 N -0.62 -8.68 3.07 -162.98 -0.50 -9.18 16 14 C 0.55 10.33 7.66 -10.99 -0.08 10.24 16 15 O -0.51 -11.24 14.91 5.55 0.08 -11.16 16 16 C -0.12 -2.44 5.16 36.00 0.19 -2.26 16 17 S -0.14 -3.69 18.55 -107.50 -1.99 -5.68 16 18 C -0.52 -15.32 10.04 30.94 0.31 -15.01 16 19 H 0.09 2.71 8.03 -52.48 -0.42 2.29 16 20 C 0.10 2.84 5.50 -17.43 -0.10 2.75 16 21 N -0.88 -27.03 13.97 55.49 0.78 -26.25 16 22 Si 0.86 22.14 27.74 -169.99 -4.72 17.43 16 23 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.24 -6.07 6.74 56.52 0.38 -5.68 16 26 C 0.09 1.05 6.39 -2.50 -0.02 1.04 16 27 C -0.15 -0.98 9.92 -26.73 -0.27 -1.25 16 28 C -0.14 -1.00 9.76 -26.73 -0.26 -1.26 16 29 H 0.06 0.31 7.86 -51.93 -0.41 -0.10 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 33 H 0.07 0.22 7.01 -51.93 -0.36 -0.14 16 34 H 0.40 1.90 7.10 -40.82 -0.29 1.62 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.45 7.71 -51.93 -0.40 0.05 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 1.06 6.91 -51.93 -0.36 0.70 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.09 1.84 8.14 -51.91 -0.42 1.42 16 41 H 0.10 1.93 7.85 -51.92 -0.41 1.52 16 42 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.09 1.15 7.48 -51.93 -0.39 0.76 16 45 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.11 0.98 7.68 -51.93 -0.40 0.58 16 LS Contribution 402.10 15.07 6.06 6.06 Total: -1.00 -36.07 402.10 -9.20 -45.26 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -8.06 Total: -0.44 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -0.67 Total: -3.00 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.01 Total: -41.00 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: 0.17 Total: -18.62 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.72 Total: 17.43 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.07 -9.20 -45.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718673690.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.464 kcal (2) G-P(sol) polarization free energy of solvation -36.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds