Wall clock time and date at job start Sat Apr 11 2020 06:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46648 * 2 1 4 4 C 1.50706 * 115.55296 * 65.26169 * 3 2 1 5 5 O 1.21275 * 119.99840 * 209.99376 * 4 3 2 6 6 N 1.34777 * 119.99694 * 30.26716 * 4 3 2 7 7 C 1.46503 * 119.99922 * 184.97148 * 6 4 3 8 8 H 1.09008 * 110.88293 * 34.29929 * 7 6 4 9 9 C 1.55157 * 111.00576 * 158.17841 * 7 6 4 10 10 C 1.54322 * 102.94256 * 153.57985 * 9 7 6 11 11 H 1.08995 * 109.88832 * 97.22077 * 10 9 7 12 12 C 1.52998 * 109.87794 * 218.23730 * 10 9 7 13 13 N 1.47026 * 107.26927 * 337.80418 * 10 9 7 14 14 C 1.34774 * 125.64998 * 179.00006 * 13 10 9 15 15 O 1.21288 * 120.00037 * 359.97438 * 14 13 10 16 16 C 1.50694 * 120.00405 * 180.02562 * 14 13 10 17 17 S 1.80999 * 109.47343 * 180.02562 * 16 14 13 18 18 C 1.76206 * 100.00062 * 180.02562 * 17 16 14 19 19 H 1.08008 * 119.99750 * 359.97438 * 18 17 16 20 20 C 1.38792 * 119.99948 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00038 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 120.00245 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47025 * 90.00074 * 22 20 18 24 24 H 1.48494 * 109.47357 * 210.00219 * 22 20 18 25 25 H 1.48498 * 109.47013 * 330.00215 * 22 20 18 26 26 C 1.47474 * 108.72358 * 358.97867 * 13 10 9 27 27 C 1.53001 * 117.51613 * 210.95849 * 3 2 1 28 28 C 1.52993 * 60.00243 * 107.48384 * 27 3 2 29 29 H 1.08998 * 109.47306 * 294.97118 * 1 2 3 30 30 H 1.09004 * 109.46724 * 54.97542 * 1 2 3 31 31 H 1.09004 * 109.47047 * 174.97055 * 1 2 3 32 32 H 1.09000 * 109.46942 * 239.99981 * 2 1 3 33 33 H 1.09001 * 109.46713 * 119.99439 * 2 1 3 34 34 H 0.96999 * 120.00509 * 4.96574 * 6 4 3 35 35 H 1.09001 * 110.71843 * 271.94125 * 9 7 6 36 36 H 1.08995 * 110.71942 * 35.21020 * 9 7 6 37 37 H 1.08999 * 109.47752 * 59.99891 * 12 10 9 38 38 H 1.09004 * 109.46672 * 179.97438 * 12 10 9 39 39 H 1.08993 * 109.47225 * 299.99219 * 12 10 9 40 40 H 1.09009 * 109.46897 * 299.99841 * 16 14 13 41 41 H 1.09003 * 109.47172 * 59.99657 * 16 14 13 42 42 H 0.97000 * 120.00639 * 179.97438 * 21 20 18 43 43 H 1.08999 * 110.34751 * 265.25291 * 26 13 10 44 44 H 1.09000 * 110.40445 * 142.91468 * 26 13 10 45 45 H 1.08998 * 117.49757 * 214.97722 * 27 3 2 46 46 H 1.09004 * 117.49745 * 359.97438 * 27 3 2 47 47 H 1.09000 * 117.50158 * 252.51315 * 28 27 3 48 48 H 1.09003 * 117.50345 * 107.48653 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.7201 2.2450 1.2349 5 8 1.5701 3.4459 1.1556 6 7 1.6062 1.6289 2.4281 7 6 1.1889 2.3897 3.6085 8 1 0.4731 3.1659 3.3374 9 6 0.6055 1.4511 4.6976 10 6 0.8697 2.2304 6.0031 11 1 -0.0253 2.7799 6.2945 12 6 1.2699 1.2600 7.1163 13 7 1.9684 3.1701 5.7358 14 6 2.4847 4.0469 6.6196 15 8 2.0393 4.1057 7.7462 16 6 3.6145 4.9550 6.2079 17 16 4.0835 6.0062 7.6047 18 6 5.3833 6.9373 6.8641 19 1 5.6575 6.7579 5.8350 20 6 6.0547 7.9013 7.6033 21 7 7.0260 8.5964 7.0503 22 14 5.5799 8.2121 9.3831 23 1 6.3806 7.3305 10.2702 24 1 5.8460 9.6323 9.7256 25 1 4.1356 7.9205 9.5682 26 6 2.4128 2.9943 4.3406 27 6 3.3726 1.7212 -0.6980 28 6 2.0624 2.1839 -1.3382 29 1 -0.3634 0.4338 0.9316 30 1 -0.3633 0.5898 -0.8416 31 1 -0.3633 -1.0237 -0.0901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.8005 0.6817 2.5055 35 1 -0.4637 1.3029 4.5465 36 1 1.1309 0.4962 4.7053 37 1 2.1754 0.7273 6.8259 38 1 1.4552 1.8172 8.0346 39 1 0.4645 0.5445 7.2814 40 1 4.4710 4.3538 5.9025 41 1 3.2933 5.5796 5.3743 42 1 7.4950 9.2704 7.5667 43 1 3.2586 2.3083 4.2958 44 1 2.6797 3.9562 3.9028 45 1 4.0180 2.4849 -0.2641 46 1 3.8866 0.8766 -1.1571 47 1 1.7141 1.6439 -2.2186 48 1 1.8456 3.2521 -1.3254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718673690.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:23 Heat of formation + Delta-G solvation = -78.027556 kcal Electronic energy + Delta-G solvation = -27512.578763 eV Core-core repulsion = 23693.152752 eV Total energy + Delta-G solvation = -3819.426011 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -41.72177 -40.95097 -38.88421 -37.72441 -35.57279 -34.71946 -33.42696 -32.73063 -31.03789 -30.31549 -27.90533 -26.94543 -25.93948 -24.20894 -23.40767 -23.04074 -22.18150 -20.73435 -20.23770 -19.55357 -18.34531 -17.88498 -17.78670 -17.17858 -16.77960 -16.55806 -16.13018 -15.96953 -15.72642 -15.34832 -14.96026 -14.85916 -14.78591 -14.54146 -14.44860 -14.21657 -14.03341 -13.65151 -13.41958 -13.36090 -13.27532 -13.06739 -13.04157 -12.68875 -12.59820 -12.54783 -12.35925 -12.10674 -12.00310 -11.89984 -11.86830 -11.33718 -11.20827 -11.04062 -10.97086 -10.82251 -10.61648 -10.26759 -9.79784 -9.06051 -8.55435 -6.27752 0.90167 1.28570 1.39251 1.42119 1.44927 1.49277 1.80123 2.18409 2.22610 2.62588 2.82363 2.85445 3.27628 3.41863 3.61735 3.69343 3.76601 3.84403 3.89178 3.97570 4.04366 4.10095 4.15930 4.30894 4.36760 4.47455 4.53188 4.61249 4.64018 4.68731 4.70813 4.75060 4.85380 4.87709 4.98518 5.06630 5.10115 5.15481 5.22046 5.24729 5.25527 5.39928 5.44032 5.47071 5.66358 6.06451 6.24253 6.48690 6.88727 6.99575 7.19754 8.57418 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014034 B = 0.002636 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.662372 B =10620.849760 C =12297.014004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.078 4.078 3 C -0.165 4.165 4 C 0.547 3.453 5 O -0.583 6.583 6 N -0.697 5.697 7 C 0.142 3.858 8 H 0.087 0.913 9 C -0.110 4.110 10 C 0.128 3.872 11 H 0.071 0.929 12 C -0.156 4.156 13 N -0.609 5.609 14 C 0.551 3.449 15 O -0.551 6.551 16 C -0.106 4.106 17 S -0.164 6.164 18 C -0.532 4.532 19 H 0.057 0.943 20 C 0.045 3.955 21 N -0.917 5.917 22 Si 0.917 3.083 23 H -0.259 1.259 24 H -0.257 1.257 25 H -0.237 1.237 26 C 0.085 3.915 27 C -0.144 4.144 28 C -0.150 4.150 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.420 0.580 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.063 0.937 38 H 0.035 0.965 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.278 0.722 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.080 0.920 46 H 0.133 0.867 47 H 0.125 0.875 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.811 -26.698 -16.319 34.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.116 4.116 3 C -0.168 4.168 4 C 0.335 3.665 5 O -0.463 6.463 6 N -0.350 5.350 7 C 0.035 3.965 8 H 0.105 0.895 9 C -0.148 4.148 10 C 0.026 3.974 11 H 0.089 0.911 12 C -0.214 4.214 13 N -0.344 5.344 14 C 0.339 3.661 15 O -0.429 6.429 16 C -0.257 4.257 17 S 0.062 5.938 18 C -0.680 4.680 19 H 0.075 0.925 20 C -0.160 4.160 21 N -0.554 5.554 22 Si 0.738 3.262 23 H -0.183 1.183 24 H -0.181 1.181 25 H -0.161 1.161 26 C -0.040 4.040 27 C -0.181 4.181 28 C -0.187 4.187 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.260 0.740 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.114 0.886 40 H 0.124 0.876 41 H 0.117 0.883 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.080 0.920 45 H 0.099 0.901 46 H 0.151 0.849 47 H 0.144 0.856 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.434 -25.595 -14.651 33.286 hybrid contribution 1.133 0.831 -0.641 1.544 sum -14.301 -24.765 -15.292 32.429 Atomic orbital electron populations 1.21788 0.95226 1.02527 1.01640 1.21126 0.96019 0.89850 1.04557 1.21630 1.05297 0.98324 0.91546 1.20112 0.74656 0.86932 0.84793 1.90735 1.51770 1.16942 1.86844 1.45613 1.69230 1.13817 1.06355 1.21863 0.94388 0.95143 0.85086 0.89467 1.23002 1.04428 0.98301 0.89097 1.21797 0.88882 0.89715 0.97048 0.91082 1.22087 1.02886 0.98808 0.97649 1.48378 1.36745 1.37078 1.12243 1.19501 0.82754 0.79678 0.84217 1.90675 1.61919 1.69443 1.20844 1.23228 1.00044 1.00099 1.02340 1.84566 1.44995 1.45061 1.19163 1.22435 1.20095 1.24348 1.01116 0.92471 1.25604 0.93593 0.93886 1.02926 1.70017 1.22602 1.23596 1.39234 0.85834 0.81623 0.79257 0.79448 1.18339 1.18066 1.16088 1.22857 0.98876 1.01933 0.80304 1.23136 0.89428 1.03978 1.01545 1.23039 1.00836 1.00441 0.94429 0.93330 0.93424 0.90733 0.89118 0.89384 0.74045 0.86537 0.86722 0.91806 0.94530 0.88596 0.87648 0.88278 0.91229 0.89371 0.91980 0.90099 0.84922 0.85646 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.72 71.98 0.70 -0.30 16 2 C -0.08 -0.41 5.45 30.60 0.17 -0.24 16 3 C -0.16 -2.02 2.04 -52.93 -0.11 -2.12 16 4 C 0.55 10.27 6.90 87.66 0.60 10.88 16 5 O -0.58 -17.25 16.01 -3.01 -0.05 -17.30 16 6 N -0.70 -8.66 5.07 -435.95 -2.21 -10.87 16 7 C 0.14 2.28 3.33 46.38 0.15 2.44 16 8 H 0.09 1.82 7.71 -2.38 -0.02 1.80 16 9 C -0.11 -1.11 6.11 31.78 0.19 -0.91 16 10 C 0.13 2.53 3.45 45.34 0.16 2.68 16 11 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 12 C -0.16 -2.98 9.10 71.98 0.66 -2.33 16 13 N -0.61 -16.63 3.07 -787.94 -2.42 -19.05 16 14 C 0.55 20.89 7.66 87.66 0.67 21.56 16 15 O -0.55 -24.50 14.91 -3.05 -0.05 -24.55 16 16 C -0.11 -4.48 5.16 71.23 0.37 -4.12 16 17 S -0.16 -8.73 18.55 -56.49 -1.05 -9.78 16 18 C -0.53 -32.37 10.04 67.95 0.68 -31.69 16 19 H 0.06 3.70 8.03 -2.91 -0.02 3.68 16 20 C 0.05 2.75 5.50 84.86 0.47 3.21 16 21 N -0.92 -57.32 13.97 21.65 0.30 -57.02 16 22 Si 0.92 46.09 27.74 68.60 1.90 47.99 16 23 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 25 H -0.24 -11.91 6.74 99.48 0.67 -11.24 16 26 C 0.08 1.89 6.39 86.84 0.55 2.45 16 27 C -0.14 -1.71 9.92 30.59 0.30 -1.40 16 28 C -0.15 -2.03 9.76 30.59 0.30 -1.73 16 29 H 0.05 0.39 7.86 -2.39 -0.02 0.37 16 30 H 0.05 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.09 0.25 8.09 -2.39 -0.02 0.23 16 33 H 0.09 0.14 7.01 -2.39 -0.02 0.12 16 34 H 0.42 2.23 7.10 -92.71 -0.66 1.58 16 35 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.11 0.55 7.71 -2.39 -0.02 0.54 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.04 1.00 6.91 -2.38 -0.02 0.98 16 39 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.11 4.18 8.14 -2.39 -0.02 4.16 16 41 H 0.10 4.11 7.85 -2.39 -0.02 4.09 16 42 H 0.28 16.00 8.31 -92.71 -0.77 15.23 16 43 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.06 1.71 7.48 -2.39 -0.02 1.69 16 45 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.08 1.55 7.68 -2.39 -0.02 1.53 16 Total: -1.00 -83.22 402.10 2.56 -80.66 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.25 Total: 11.54 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 5.87 Total: -1.63 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -4.33 Total: -86.93 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -0.09 Total: -41.84 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.90 Total: 47.99 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.05 Total: -9.78 kcal Total: -83.22 2.56 -80.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718673690.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.632 kcal (2) G-P(sol) polarization free energy of solvation -83.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds