Wall clock time and date at job start Sat Apr 11 2020 06:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47472 * 2 1 4 4 C 1.50700 * 115.54938 * 294.73900 * 3 2 1 5 5 O 1.21289 * 120.00316 * 99.33008 * 4 3 2 6 6 N 1.34778 * 120.00018 * 279.33116 * 4 3 2 7 7 C 1.46494 * 120.00156 * 174.99487 * 6 4 3 8 8 H 1.09004 * 110.91590 * 322.54611 * 7 6 4 9 9 C 1.55445 * 111.11822 * 198.55627 * 7 6 4 10 10 C 1.54331 * 102.97066 * 206.46298 * 9 7 6 11 11 H 1.09002 * 109.88162 * 262.77782 * 10 9 7 12 12 C 1.52998 * 110.01044 * 141.67932 * 10 9 7 13 13 N 1.47020 * 107.26716 * 22.19034 * 10 9 7 14 14 C 1.34780 * 125.64594 * 181.03651 * 13 10 9 15 15 O 1.21280 * 120.00017 * 0.02562 * 14 13 10 16 16 C 1.50697 * 120.00104 * 179.97438 * 14 13 10 17 17 S 1.80997 * 109.47393 * 180.02562 * 16 14 13 18 18 C 1.76198 * 100.00328 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99970 * 0.02562 * 18 17 16 20 20 C 1.38793 * 119.99964 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00398 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99783 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47115 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47110 * 120.00084 * 22 20 18 25 25 H 1.48501 * 109.47016 * 239.99556 * 22 20 18 26 26 C 1.47424 * 108.70717 * 1.06121 * 13 10 9 27 27 C 1.52998 * 117.51518 * 80.43385 * 3 2 1 28 28 C 1.52995 * 117.50005 * 149.06641 * 3 2 1 29 29 H 1.09003 * 109.46728 * 295.68762 * 1 2 3 30 30 H 1.08996 * 109.46669 * 55.68928 * 1 2 3 31 31 H 1.08998 * 109.47204 * 175.69036 * 1 2 3 32 32 H 1.09008 * 109.47100 * 240.00258 * 2 1 3 33 33 H 1.09001 * 109.47321 * 120.00113 * 2 1 3 34 34 H 0.96998 * 120.00072 * 354.99242 * 6 4 3 35 35 H 1.08996 * 110.70940 * 88.09101 * 9 7 6 36 36 H 1.08999 * 110.70632 * 324.83065 * 9 7 6 37 37 H 1.08997 * 109.47402 * 300.66244 * 12 10 9 38 38 H 1.09006 * 109.47104 * 60.66336 * 12 10 9 39 39 H 1.08997 * 109.46962 * 180.65890 * 12 10 9 40 40 H 1.08994 * 109.47440 * 300.00868 * 16 14 13 41 41 H 1.09007 * 109.46778 * 60.00368 * 16 14 13 42 42 H 0.96996 * 120.00098 * 179.97438 * 21 20 18 43 43 H 1.08992 * 110.36703 * 94.70963 * 26 13 10 44 44 H 1.08997 * 110.36458 * 216.92239 * 26 13 10 45 45 H 1.09005 * 117.49935 * 214.97037 * 27 3 2 46 46 H 1.08993 * 117.50408 * 359.97438 * 27 3 2 47 47 H 1.09001 * 117.50160 * 359.97438 * 28 3 2 48 48 H 1.08999 * 117.50094 * 144.97995 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.7204 2.2449 -1.2349 5 8 0.7844 3.0163 -1.2314 6 7 2.4745 2.1054 -2.3432 7 6 2.0996 2.8013 -3.5766 8 1 1.0168 2.8172 -3.7007 9 6 2.7930 2.1629 -4.8127 10 6 2.8660 3.3358 -5.8131 11 1 2.0327 3.2782 -6.5133 12 6 4.1911 3.2909 -6.5766 13 7 2.7796 4.5797 -5.0342 14 6 2.7879 5.8275 -5.5435 15 8 2.8720 5.9927 -6.7421 16 6 2.6918 7.0174 -4.6238 17 16 2.7276 8.5402 -5.6015 18 6 2.6049 9.7348 -4.3121 19 1 2.5373 9.4137 -3.2832 20 6 2.5949 11.0883 -4.6188 21 7 2.6777 11.4798 -5.8728 22 14 2.4655 12.3548 -3.2517 23 1 2.3861 11.6617 -1.9408 24 1 3.6623 13.2335 -3.2759 25 1 1.2445 13.1760 -3.4517 26 6 2.6828 4.2362 -3.6038 27 6 2.0632 2.1840 1.3381 28 6 3.3731 1.7204 0.6976 29 1 -0.3633 0.4455 0.9261 30 1 -0.3632 0.5793 -0.8488 31 1 -0.3633 -1.0247 -0.0772 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 3.2654 1.5443 -2.3242 35 1 2.1897 1.3494 -5.2156 36 1 3.7926 1.8125 -4.5557 37 1 5.0194 3.3567 -5.8711 38 1 4.2595 2.3549 -7.1310 39 1 4.2385 4.1291 -7.2717 40 1 1.7588 6.9684 -4.0625 41 1 3.5334 7.0101 -3.9311 42 1 2.6704 12.4257 -6.0871 43 1 3.6698 4.2533 -3.1420 44 1 2.0133 4.9276 -3.0922 45 1 1.8472 3.2524 1.3252 46 1 1.7145 1.6445 2.2186 47 1 3.8865 0.8757 1.1570 48 1 4.0190 2.4834 0.2633 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718673691.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:30 Heat of formation + Delta-G solvation = -54.365044 kcal Electronic energy + Delta-G solvation = -27439.117863 eV Core-core repulsion = 23620.717935 eV Total energy + Delta-G solvation = -3818.399927 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.79211 -39.81191 -37.74571 -36.93294 -34.49868 -32.40536 -32.34650 -32.18081 -30.14635 -28.68574 -26.03522 -25.47317 -25.22454 -23.59320 -22.85469 -22.01890 -21.30103 -19.92516 -18.88860 -17.65161 -17.26827 -16.89647 -16.62637 -15.90956 -15.55262 -15.23143 -14.80539 -14.77881 -14.50701 -14.25127 -14.01080 -13.79606 -13.61895 -13.50367 -13.11288 -12.98004 -12.84004 -12.59850 -12.55674 -12.09593 -12.04551 -11.93831 -11.91080 -11.69030 -11.59906 -11.16929 -11.04616 -11.03745 -10.97338 -10.84540 -10.73124 -10.46957 -9.99519 -9.78538 -9.58029 -9.26400 -9.04979 -8.52676 -8.20871 -6.47650 -6.19426 -3.89688 2.27434 2.55842 2.97417 3.08326 3.20983 3.23681 3.29057 3.34008 3.64504 4.06287 4.12651 4.22748 4.30867 4.34224 4.40764 4.52956 4.63364 4.90938 4.92710 4.99459 5.01696 5.07490 5.12056 5.15858 5.19012 5.30602 5.37856 5.43140 5.47158 5.48038 5.55208 5.58757 5.61512 5.65469 5.66667 5.69120 5.70418 5.90917 5.92901 6.01201 6.11558 6.17852 6.25297 6.51879 7.13323 7.62580 7.65875 7.90035 8.38322 8.56969 9.26186 10.88103 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011203 B = 0.002739 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.794968 B =10220.662794 C =12182.121985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.076 4.076 3 C -0.158 4.158 4 C 0.552 3.448 5 O -0.523 6.523 6 N -0.717 5.717 7 C 0.134 3.866 8 H 0.105 0.895 9 C -0.132 4.132 10 C 0.138 3.862 11 H 0.078 0.922 12 C -0.163 4.163 13 N -0.621 5.621 14 C 0.552 3.448 15 O -0.512 6.512 16 C -0.148 4.148 17 S -0.060 6.060 18 C -0.533 4.533 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.093 3.907 27 C -0.143 4.143 28 C -0.165 4.165 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.403 0.597 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.268 0.732 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.837 -28.438 11.994 30.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.114 4.114 3 C -0.161 4.161 4 C 0.337 3.663 5 O -0.398 6.398 6 N -0.369 5.369 7 C 0.028 3.972 8 H 0.122 0.878 9 C -0.170 4.170 10 C 0.034 3.966 11 H 0.096 0.904 12 C -0.221 4.221 13 N -0.359 5.359 14 C 0.341 3.659 15 O -0.385 6.385 16 C -0.298 4.298 17 S 0.166 5.834 18 C -0.681 4.681 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.205 1.205 26 C -0.032 4.032 27 C -0.181 4.181 28 C -0.202 4.202 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.238 0.762 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.122 0.878 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.259 -27.388 10.033 29.195 hybrid contribution 0.249 0.390 2.332 2.377 sum 1.508 -26.998 12.364 29.733 Atomic orbital electron populations 1.21742 0.94848 1.01578 1.02818 1.20987 0.96584 0.91112 1.02671 1.21492 1.03941 0.97637 0.93052 1.19578 0.81930 0.81509 0.83250 1.90761 1.29509 1.36396 1.83131 1.45838 1.30025 1.50515 1.10474 1.22137 1.00723 0.91177 0.83169 0.87754 1.23063 1.01728 0.97745 0.94482 1.21442 0.99061 0.82842 0.93242 0.90367 1.22141 0.96078 1.02929 1.00910 1.48506 1.75433 1.05068 1.06918 1.19998 0.75070 0.81955 0.88925 1.90692 1.47895 1.84503 1.15446 1.23526 1.04776 0.98878 1.02644 1.85347 1.96188 0.91396 1.10426 1.22900 1.58327 0.92780 0.94128 0.90903 1.24990 0.94576 0.97716 0.96315 1.70028 1.46946 1.16337 1.17025 0.86117 0.77911 0.80439 0.81050 1.19592 1.20572 1.20546 1.22600 1.01214 0.96390 0.83039 1.22996 0.99712 1.01333 0.94044 1.23161 0.90173 1.03835 1.03021 0.92296 0.92365 0.92483 0.91227 0.90825 0.76207 0.89327 0.89787 0.92601 0.91935 0.90561 0.89264 0.89433 0.92261 0.91332 0.89722 0.87915 0.87817 0.87776 0.88194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.84 37.16 0.37 -0.66 16 2 C -0.08 -0.41 5.81 -26.73 -0.16 -0.57 16 3 C -0.16 -1.10 1.87 -155.67 -0.29 -1.40 16 4 C 0.55 5.40 6.29 -10.98 -0.07 5.33 16 5 O -0.52 -7.50 16.80 5.55 0.09 -7.40 16 6 N -0.72 -5.36 5.23 -51.58 -0.27 -5.63 16 7 C 0.13 1.24 3.29 -65.63 -0.22 1.02 16 8 H 0.10 1.15 7.81 -51.93 -0.41 0.74 16 9 C -0.13 -0.98 6.12 -24.73 -0.15 -1.13 16 10 C 0.14 1.59 3.46 -66.95 -0.23 1.36 16 11 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 12 C -0.16 -1.85 9.11 37.16 0.34 -1.51 16 13 N -0.62 -9.14 3.07 -163.02 -0.50 -9.64 16 14 C 0.55 10.90 7.66 -10.99 -0.08 10.82 16 15 O -0.51 -11.81 14.89 5.56 0.08 -11.73 16 16 C -0.15 -3.18 5.16 36.00 0.19 -2.99 16 17 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 18 C -0.53 -15.56 9.50 30.94 0.29 -15.27 16 19 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 20 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.56 13.22 55.49 0.73 -25.83 16 22 Si 0.92 21.87 29.55 -169.99 -5.02 16.85 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.09 1.12 6.38 -2.53 -0.02 1.10 16 27 C -0.14 -1.01 9.88 -26.73 -0.26 -1.27 16 28 C -0.16 -0.89 9.92 -26.73 -0.27 -1.15 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.51 7.58 -51.93 -0.39 0.12 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.32 8.14 -51.92 -0.42 -0.11 16 33 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 34 H 0.40 1.88 8.53 -40.82 -0.35 1.53 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.48 7.72 -51.93 -0.40 0.08 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.08 1.14 6.87 -51.93 -0.36 0.78 16 40 H 0.09 1.84 7.85 -51.92 -0.41 1.44 16 41 H 0.09 1.77 8.14 -51.91 -0.42 1.34 16 42 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.08 1.18 7.47 -51.93 -0.39 0.79 16 45 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 408.32 15.07 6.15 6.15 Total: -1.00 -36.46 408.32 -9.76 -46.21 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -8.16 Total: -0.81 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -0.66 Total: -4.28 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: -0.04 Total: -41.10 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: 0.18 Total: -19.13 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.46 -9.76 -46.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718673691.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.150 kcal (2) G-P(sol) polarization free energy of solvation -36.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds