Wall clock time and date at job start Sat Apr 11 2020 06:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47472 * 2 1 4 4 C 1.50700 * 115.54938 * 294.73900 * 3 2 1 5 5 O 1.21289 * 120.00316 * 99.33008 * 4 3 2 6 6 N 1.34778 * 120.00018 * 279.33116 * 4 3 2 7 7 C 1.46494 * 120.00156 * 174.99487 * 6 4 3 8 8 H 1.09004 * 110.91590 * 322.54611 * 7 6 4 9 9 C 1.55445 * 111.11822 * 198.55627 * 7 6 4 10 10 C 1.54331 * 102.97066 * 206.46298 * 9 7 6 11 11 H 1.09002 * 109.88162 * 262.77782 * 10 9 7 12 12 C 1.52998 * 110.01044 * 141.67932 * 10 9 7 13 13 N 1.47020 * 107.26716 * 22.19034 * 10 9 7 14 14 C 1.34780 * 125.64594 * 181.03651 * 13 10 9 15 15 O 1.21280 * 120.00017 * 0.02562 * 14 13 10 16 16 C 1.50697 * 120.00104 * 179.97438 * 14 13 10 17 17 S 1.80997 * 109.47393 * 180.02562 * 16 14 13 18 18 C 1.76198 * 100.00328 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99970 * 0.02562 * 18 17 16 20 20 C 1.38793 * 119.99964 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00398 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99783 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47115 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47110 * 120.00084 * 22 20 18 25 25 H 1.48501 * 109.47016 * 239.99556 * 22 20 18 26 26 C 1.47424 * 108.70717 * 1.06121 * 13 10 9 27 27 C 1.52998 * 117.51518 * 80.43385 * 3 2 1 28 28 C 1.52995 * 117.50005 * 149.06641 * 3 2 1 29 29 H 1.09003 * 109.46728 * 295.68762 * 1 2 3 30 30 H 1.08996 * 109.46669 * 55.68928 * 1 2 3 31 31 H 1.08998 * 109.47204 * 175.69036 * 1 2 3 32 32 H 1.09008 * 109.47100 * 240.00258 * 2 1 3 33 33 H 1.09001 * 109.47321 * 120.00113 * 2 1 3 34 34 H 0.96998 * 120.00072 * 354.99242 * 6 4 3 35 35 H 1.08996 * 110.70940 * 88.09101 * 9 7 6 36 36 H 1.08999 * 110.70632 * 324.83065 * 9 7 6 37 37 H 1.08997 * 109.47402 * 300.66244 * 12 10 9 38 38 H 1.09006 * 109.47104 * 60.66336 * 12 10 9 39 39 H 1.08997 * 109.46962 * 180.65890 * 12 10 9 40 40 H 1.08994 * 109.47440 * 300.00868 * 16 14 13 41 41 H 1.09007 * 109.46778 * 60.00368 * 16 14 13 42 42 H 0.96996 * 120.00098 * 179.97438 * 21 20 18 43 43 H 1.08992 * 110.36703 * 94.70963 * 26 13 10 44 44 H 1.08997 * 110.36458 * 216.92239 * 26 13 10 45 45 H 1.09005 * 117.49935 * 214.97037 * 27 3 2 46 46 H 1.08993 * 117.50408 * 359.97438 * 27 3 2 47 47 H 1.09001 * 117.50160 * 359.97438 * 28 3 2 48 48 H 1.08999 * 117.50094 * 144.97995 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.7204 2.2449 -1.2349 5 8 0.7844 3.0163 -1.2314 6 7 2.4745 2.1054 -2.3432 7 6 2.0996 2.8013 -3.5766 8 1 1.0168 2.8172 -3.7007 9 6 2.7930 2.1629 -4.8127 10 6 2.8660 3.3358 -5.8131 11 1 2.0327 3.2782 -6.5133 12 6 4.1911 3.2909 -6.5766 13 7 2.7796 4.5797 -5.0342 14 6 2.7879 5.8275 -5.5435 15 8 2.8720 5.9927 -6.7421 16 6 2.6918 7.0174 -4.6238 17 16 2.7276 8.5402 -5.6015 18 6 2.6049 9.7348 -4.3121 19 1 2.5373 9.4137 -3.2832 20 6 2.5949 11.0883 -4.6188 21 7 2.6777 11.4798 -5.8728 22 14 2.4655 12.3548 -3.2517 23 1 2.3861 11.6617 -1.9408 24 1 3.6623 13.2335 -3.2759 25 1 1.2445 13.1760 -3.4517 26 6 2.6828 4.2362 -3.6038 27 6 2.0632 2.1840 1.3381 28 6 3.3731 1.7204 0.6976 29 1 -0.3633 0.4455 0.9261 30 1 -0.3632 0.5793 -0.8488 31 1 -0.3633 -1.0247 -0.0772 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 3.2654 1.5443 -2.3242 35 1 2.1897 1.3494 -5.2156 36 1 3.7926 1.8125 -4.5557 37 1 5.0194 3.3567 -5.8711 38 1 4.2595 2.3549 -7.1310 39 1 4.2385 4.1291 -7.2717 40 1 1.7588 6.9684 -4.0625 41 1 3.5334 7.0101 -3.9311 42 1 2.6704 12.4257 -6.0871 43 1 3.6698 4.2533 -3.1420 44 1 2.0133 4.9276 -3.0922 45 1 1.8472 3.2524 1.3252 46 1 1.7145 1.6445 2.2186 47 1 3.8865 0.8757 1.1570 48 1 4.0190 2.4834 0.2633 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718673691.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:29 Heat of formation + Delta-G solvation = -79.112786 kcal Electronic energy + Delta-G solvation = -27440.191005 eV Core-core repulsion = 23620.717935 eV Total energy + Delta-G solvation = -3819.473070 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -41.67622 -40.89071 -38.84595 -37.77328 -35.42713 -34.63501 -33.38976 -32.80361 -31.08422 -30.25154 -27.71855 -26.94178 -25.91668 -24.28750 -23.40095 -22.96439 -22.11385 -20.74880 -20.21919 -19.52602 -18.29670 -17.78829 -17.67392 -16.93560 -16.78191 -16.55821 -16.43498 -15.99668 -15.79995 -15.21863 -14.85858 -14.74705 -14.56108 -14.55281 -14.35018 -14.16076 -14.02506 -13.62686 -13.39010 -13.32874 -13.20883 -13.01254 -12.94198 -12.65847 -12.61052 -12.54778 -12.40577 -12.12147 -12.04269 -11.87718 -11.76070 -11.34473 -11.19928 -10.99777 -10.95380 -10.72973 -10.36013 -10.26869 -9.77589 -8.73065 -8.39360 -6.18324 1.17535 1.37918 1.39216 1.48185 1.52706 1.53774 1.81543 2.20430 2.22822 2.70668 2.94478 3.16125 3.33777 3.44507 3.62550 3.75842 3.79542 3.88597 3.92657 4.01716 4.07402 4.15000 4.17467 4.33941 4.37516 4.43706 4.53633 4.56850 4.63095 4.69727 4.70926 4.77471 4.85229 4.88709 5.00367 5.05893 5.08687 5.10738 5.20721 5.22889 5.25361 5.36832 5.38984 5.41547 5.46072 6.15221 6.27714 6.51069 7.01628 7.05323 7.21464 8.70301 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011203 B = 0.002739 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.794968 B =10220.662794 C =12182.121985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.071 4.071 3 C -0.162 4.162 4 C 0.548 3.452 5 O -0.578 6.578 6 N -0.697 5.697 7 C 0.142 3.858 8 H 0.086 0.914 9 C -0.109 4.109 10 C 0.127 3.873 11 H 0.069 0.931 12 C -0.157 4.157 13 N -0.611 5.611 14 C 0.550 3.450 15 O -0.554 6.554 16 C -0.123 4.123 17 S -0.141 6.141 18 C -0.548 4.548 19 H 0.077 0.923 20 C 0.015 3.985 21 N -0.909 5.909 22 Si 1.000 3.000 23 H -0.260 1.260 24 H -0.269 1.269 25 H -0.272 1.272 26 C 0.087 3.913 27 C -0.162 4.162 28 C -0.140 4.140 29 H 0.050 0.950 30 H 0.030 0.970 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.422 0.578 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.064 0.936 38 H 0.096 0.904 39 H 0.033 0.967 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.273 0.727 43 H 0.087 0.913 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.118 0.882 47 H 0.132 0.868 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.275 -31.570 14.367 34.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.108 4.108 3 C -0.165 4.165 4 C 0.335 3.665 5 O -0.456 6.456 6 N -0.350 5.350 7 C 0.036 3.964 8 H 0.104 0.896 9 C -0.147 4.147 10 C 0.024 3.976 11 H 0.087 0.913 12 C -0.214 4.214 13 N -0.347 5.347 14 C 0.338 3.662 15 O -0.432 6.432 16 C -0.274 4.274 17 S 0.087 5.913 18 C -0.696 4.696 19 H 0.096 0.904 20 C -0.190 4.190 21 N -0.545 5.545 22 Si 0.821 3.179 23 H -0.184 1.184 24 H -0.194 1.194 25 H -0.197 1.197 26 C -0.038 4.038 27 C -0.199 4.199 28 C -0.177 4.177 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.261 0.739 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.083 0.917 38 H 0.114 0.886 39 H 0.052 0.948 40 H 0.113 0.887 41 H 0.119 0.881 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.079 0.921 45 H 0.094 0.906 46 H 0.137 0.863 47 H 0.150 0.850 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.735 -30.605 12.428 33.145 hybrid contribution -0.223 1.258 1.609 2.054 sum 2.512 -29.346 14.036 32.627 Atomic orbital electron populations 1.21746 0.96336 1.01838 1.01162 1.21035 0.95183 0.90085 1.04523 1.21491 1.05647 0.98005 0.91402 1.20170 0.81105 0.80870 0.84355 1.90744 1.31927 1.38849 1.84103 1.45652 1.30254 1.49824 1.09243 1.21894 0.99818 0.89822 0.84901 0.89619 1.23033 1.03798 0.96178 0.91645 1.21801 0.99039 0.82559 0.94190 0.91331 1.22085 0.96013 1.02878 1.00466 1.48402 1.72993 1.04528 1.08728 1.19618 0.75519 0.83169 0.87942 1.90674 1.50329 1.85366 1.16804 1.23326 1.05585 0.96526 1.02008 1.85449 1.96480 0.95673 1.13744 1.23193 1.58812 0.93472 0.94149 0.90439 1.26130 0.93628 1.00032 0.99208 1.70176 1.47698 1.17136 1.19530 0.84898 0.78328 0.77120 0.77548 1.18394 1.19447 1.19711 1.22811 1.01907 0.97932 0.81120 1.23037 1.01868 1.00135 0.94904 1.23265 0.89115 1.04203 1.01090 0.93108 0.95109 0.91017 0.89668 0.88569 0.73920 0.86479 0.86648 0.91743 0.88575 0.94802 0.88727 0.88058 0.91826 0.89514 0.92052 0.90582 0.86334 0.84976 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.84 71.98 0.71 -1.16 16 2 C -0.07 -0.55 5.81 30.59 0.18 -0.37 16 3 C -0.16 -1.91 1.87 -52.93 -0.10 -2.01 16 4 C 0.55 10.09 6.29 87.66 0.55 10.65 16 5 O -0.58 -16.99 16.80 -3.06 -0.05 -17.04 16 6 N -0.70 -8.56 5.23 -435.48 -2.28 -10.84 16 7 C 0.14 2.36 3.29 46.49 0.15 2.52 16 8 H 0.09 1.83 7.81 -2.39 -0.02 1.81 16 9 C -0.11 -1.19 6.12 31.89 0.20 -0.99 16 10 C 0.13 2.72 3.46 45.34 0.16 2.88 16 11 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 12 C -0.16 -3.30 9.11 71.98 0.66 -2.64 16 13 N -0.61 -17.86 3.07 -788.06 -2.42 -20.28 16 14 C 0.55 22.46 7.66 87.66 0.67 23.13 16 15 O -0.55 -26.90 14.89 -3.03 -0.05 -26.95 16 16 C -0.12 -5.49 5.16 71.23 0.37 -5.12 16 17 S -0.14 -8.21 20.57 -56.49 -1.16 -9.37 16 18 C -0.55 -32.81 9.50 67.95 0.65 -32.17 16 19 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 20 C 0.01 0.88 5.49 84.86 0.47 1.35 16 21 N -0.91 -57.07 13.22 21.65 0.29 -56.79 16 22 Si 1.00 45.14 29.55 68.60 2.03 47.17 16 23 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 C 0.09 2.02 6.38 86.86 0.55 2.57 16 27 C -0.16 -2.07 9.88 30.60 0.30 -1.76 16 28 C -0.14 -1.05 9.92 30.59 0.30 -0.74 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.03 0.53 7.58 -2.39 -0.02 0.52 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 33 H 0.10 0.37 8.09 -2.39 -0.02 0.35 16 34 H 0.42 2.07 8.53 -92.71 -0.79 1.28 16 35 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.12 0.64 7.72 -2.39 -0.02 0.62 16 37 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.03 1.01 6.87 -2.39 -0.02 1.00 16 40 H 0.09 4.06 7.85 -2.40 -0.02 4.04 16 41 H 0.10 4.17 8.14 -2.39 -0.02 4.15 16 42 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 43 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.06 1.74 7.47 -2.39 -0.02 1.72 16 45 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 46 H 0.12 1.10 8.14 -2.39 -0.02 1.09 16 47 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 48 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -86.12 408.32 2.33 -83.79 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.16 Total: 14.18 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 5.81 Total: -3.88 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -4.41 Total: -87.91 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -0.10 Total: -43.98 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.37 kcal Total: -86.12 2.33 -83.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718673691.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.680 kcal (2) G-P(sol) polarization free energy of solvation -86.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds