Wall clock time and date at job start Sat Apr 11 2020 06:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.47146 * 2 1 4 4 C 1.32999 * 119.99567 * 118.52440 * 3 2 1 5 5 C 1.50696 * 120.00118 * 354.32025 * 4 3 2 6 6 C 1.47094 * 119.99423 * 174.32516 * 4 3 2 7 7 O 1.21613 * 120.00768 * 7.24933 * 6 4 3 8 8 N 1.34783 * 119.99821 * 187.24612 * 6 4 3 9 9 C 1.46505 * 119.99649 * 6.90397 * 8 6 4 10 10 C 1.46501 * 120.00272 * 186.90302 * 8 6 4 11 11 C 1.53783 * 113.61395 * 240.00039 * 10 8 6 12 12 C 1.53772 * 87.08040 * 220.01493 * 11 10 8 13 13 N 1.46500 * 113.62023 * 270.80150 * 12 11 10 14 14 C 1.34769 * 119.99968 * 203.47473 * 13 12 11 15 15 O 1.21279 * 120.00407 * 359.97438 * 14 13 12 16 16 C 1.50706 * 120.00001 * 179.97438 * 14 13 12 17 17 S 1.80992 * 109.47533 * 179.97438 * 16 14 13 18 18 C 1.76194 * 100.00234 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00165 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00028 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00061 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99633 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47425 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47154 * 120.00084 * 22 20 18 25 25 H 1.48507 * 109.46874 * 239.99518 * 22 20 18 26 26 C 1.53776 * 113.61615 * 142.50589 * 10 8 6 27 27 H 1.08998 * 109.47068 * 59.99422 * 1 2 3 28 28 H 1.08998 * 109.47490 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46951 * 299.99992 * 1 2 3 30 30 H 1.09003 * 109.46951 * 240.00008 * 2 1 3 31 31 H 1.09001 * 109.46763 * 120.00171 * 2 1 3 32 32 H 1.07996 * 119.99974 * 298.52020 * 3 2 1 33 33 H 1.08992 * 109.47136 * 213.19978 * 5 4 3 34 34 H 1.09000 * 109.47410 * 333.20244 * 5 4 3 35 35 H 1.09011 * 109.46812 * 93.20294 * 5 4 3 36 36 H 1.09004 * 109.46985 * 272.70000 * 9 8 6 37 37 H 1.08999 * 109.47157 * 32.70236 * 9 8 6 38 38 H 1.09004 * 109.46688 * 152.70824 * 9 8 6 39 39 H 1.08997 * 112.90446 * 11.24883 * 10 8 6 40 40 H 1.09000 * 113.61315 * 105.46793 * 11 10 8 41 41 H 1.09007 * 113.61261 * 334.57026 * 11 10 8 42 42 H 1.09010 * 113.61395 * 139.97763 * 12 11 10 43 43 H 0.96995 * 119.99664 * 23.46741 * 13 12 11 44 44 H 1.09003 * 109.47153 * 300.00357 * 16 14 13 45 45 H 1.09001 * 109.47070 * 59.99708 * 16 14 13 46 46 H 0.96991 * 119.99893 * 180.02562 * 21 20 18 47 47 H 1.08995 * 113.61555 * 25.42615 * 26 10 8 48 48 H 1.09006 * 113.60945 * 254.53214 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.7726 1.8644 1.0120 5 6 3.0024 0.9898 2.2175 6 6 3.3669 3.2087 0.9546 7 8 3.0761 3.9639 0.0468 8 7 4.2337 3.6036 1.9082 9 6 4.7006 2.6473 2.9150 10 6 4.7088 4.9891 1.9379 11 6 6.2343 5.1204 1.7946 12 6 6.1597 6.2296 2.8570 13 7 5.9431 7.5656 2.2965 14 6 6.3158 8.6573 2.9934 15 8 6.8301 8.5337 4.0848 16 6 6.0935 10.0317 2.4166 17 16 6.6940 11.2796 3.5819 18 6 6.3197 12.7460 2.6797 19 1 5.8553 12.6780 1.7071 20 6 6.6228 13.9888 3.2186 21 7 7.1893 14.0718 4.4038 22 14 6.2253 15.5435 2.2623 23 1 5.5956 15.1808 0.9673 24 1 5.2885 16.3837 3.0507 25 1 7.4766 16.3020 2.0086 26 6 4.8727 5.5539 3.3588 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.7913 2.0788 -0.8218 33 1 3.0744 1.6120 3.1094 34 1 2.1701 0.2944 2.3259 35 1 3.9290 0.4302 2.0891 36 1 4.0033 2.6321 3.7527 37 1 4.7586 1.6529 2.4724 38 1 5.6874 2.9456 3.2692 39 1 4.1496 5.6438 1.2696 40 1 6.5519 5.4755 0.8142 41 1 6.7814 4.2367 2.1234 42 1 6.9776 6.2001 3.5772 43 1 5.5316 7.6645 1.4238 44 1 6.6353 10.1226 1.4751 45 1 5.0288 10.1834 2.2391 46 1 7.4008 14.9402 4.7805 47 1 5.0474 4.7889 4.1152 48 1 4.0909 6.2590 3.6412 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718834617.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:54 Heat of formation + Delta-G solvation = -12.841431 kcal Electronic energy + Delta-G solvation = -26434.116188 eV Core-core repulsion = 22617.516860 eV Total energy + Delta-G solvation = -3816.599328 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 4.09 seconds Orbital eigenvalues (eV) -41.02201 -39.62623 -38.06283 -36.61634 -35.36855 -32.98264 -32.42058 -31.79344 -29.11808 -28.62735 -26.53939 -25.96953 -25.64480 -25.37755 -23.63067 -21.18309 -20.71228 -19.12803 -18.81061 -17.86944 -17.24044 -16.86993 -16.25880 -16.15842 -15.97886 -15.39878 -14.88519 -14.79784 -14.68247 -14.27779 -14.21135 -13.92311 -13.77559 -13.65105 -13.30591 -13.09772 -12.82130 -12.77415 -12.67736 -12.63784 -12.43334 -12.05448 -11.84728 -11.78502 -11.46322 -11.06631 -11.05977 -11.01307 -11.00772 -10.75040 -10.67606 -10.03430 -9.79641 -9.50990 -9.42833 -9.07133 -8.93302 -8.83464 -8.22996 -6.49363 -6.21213 -3.91548 0.98006 2.65825 2.88886 3.00194 3.04782 3.22507 3.28786 3.33559 3.68696 4.02688 4.21089 4.25175 4.35229 4.40156 4.54488 4.57655 4.66128 4.70754 4.76592 4.78962 4.96175 5.04055 5.12113 5.13317 5.14256 5.20094 5.23596 5.35583 5.38001 5.40362 5.46422 5.52288 5.56908 5.61856 5.67517 5.70286 5.79052 5.89734 5.94316 5.99933 6.07762 6.15483 6.28158 6.65929 7.07447 7.60978 7.68521 7.86437 8.36411 8.59023 9.24494 10.86323 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024376 B = 0.001724 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.414710 B =16237.905260 C =17026.651370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.070 4.070 4 C -0.188 4.188 5 C -0.138 4.138 6 C 0.554 3.446 7 O -0.543 6.543 8 N -0.601 5.601 9 C 0.055 3.945 10 C 0.121 3.879 11 C -0.158 4.158 12 C 0.130 3.870 13 N -0.722 5.722 14 C 0.536 3.464 15 O -0.516 6.516 16 C -0.154 4.154 17 S -0.060 6.060 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.162 4.162 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.119 0.881 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.400 0.600 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.268 0.732 47 H 0.094 0.906 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.143 -32.250 -6.598 34.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.089 4.089 4 C -0.191 4.191 5 C -0.194 4.194 6 C 0.345 3.655 7 O -0.421 6.421 8 N -0.332 5.332 9 C -0.087 4.087 10 C 0.018 3.982 11 C -0.197 4.197 12 C 0.023 3.977 13 N -0.376 5.376 14 C 0.322 3.678 15 O -0.389 6.389 16 C -0.305 4.305 17 S 0.167 5.833 18 C -0.683 4.683 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.201 4.201 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.144 0.856 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.137 0.863 40 H 0.098 0.902 41 H 0.115 0.885 42 H 0.126 0.874 43 H 0.234 0.766 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.078 0.922 47 H 0.113 0.887 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.351 -31.923 -5.086 33.387 hybrid contribution -1.034 1.228 -2.251 2.764 sum -9.385 -30.695 -7.337 32.925 Atomic orbital electron populations 1.21705 0.94428 1.02036 1.02479 1.20922 0.96757 0.93493 1.03463 1.23609 0.91910 0.96603 0.96816 1.21380 1.03731 0.95251 0.98765 1.21685 1.01972 0.99213 0.96500 1.18526 0.78506 0.87236 0.81281 1.90787 1.61921 1.55402 1.34015 1.47666 1.45182 1.10747 1.29598 1.22732 0.99993 0.94060 0.91886 1.22766 0.94628 0.82337 0.98461 1.23821 0.96481 0.98985 1.00401 1.21519 0.98117 0.81750 0.96313 1.45746 1.64896 1.04621 1.22354 1.20334 0.76837 0.85590 0.85015 1.90696 1.41525 1.86539 1.20176 1.23543 1.05370 0.95937 1.05634 1.85372 1.79674 0.95216 1.23072 1.22920 1.46989 0.91918 1.06518 0.90843 1.24992 0.94608 0.98800 0.95170 1.70024 1.39349 1.25264 1.15676 0.86115 0.78206 0.81582 0.79587 1.19606 1.20564 1.20564 1.23929 0.99449 1.00415 0.96355 0.92295 0.92155 0.92422 0.90071 0.90276 0.85641 0.89463 0.91306 0.90671 0.91824 0.88896 0.91061 0.86345 0.90212 0.88542 0.87392 0.76601 0.89111 0.89128 0.92243 0.88734 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.89 37.16 0.37 -0.28 16 2 C -0.11 -0.50 6.08 -27.88 -0.17 -0.67 16 3 C -0.07 -0.51 9.09 -36.12 -0.33 -0.83 16 4 C -0.19 -1.46 5.87 -102.85 -0.60 -2.06 16 5 C -0.14 -0.60 7.25 36.00 0.26 -0.34 16 6 C 0.55 6.00 7.59 -12.66 -0.10 5.91 16 7 O -0.54 -7.96 15.77 5.27 0.08 -7.88 16 8 N -0.60 -5.28 3.08 -174.39 -0.54 -5.81 16 9 C 0.06 0.29 7.35 59.85 0.44 0.73 16 10 C 0.12 1.18 4.07 -67.12 -0.27 0.91 16 11 C -0.16 -1.40 7.35 -25.92 -0.19 -1.59 16 12 C 0.13 1.47 4.30 -67.12 -0.29 1.18 16 13 N -0.72 -9.69 5.27 -53.02 -0.28 -9.97 16 14 C 0.54 9.95 7.85 -10.99 -0.09 9.86 16 15 O -0.52 -11.55 15.48 5.56 0.09 -11.47 16 16 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 18 C -0.54 -15.37 9.50 30.94 0.29 -15.08 16 19 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.28 13.22 55.49 0.73 -25.54 16 22 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C -0.16 -1.59 7.29 -25.92 -0.19 -1.78 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.28 5.48 -51.93 -0.28 0.00 16 32 H 0.13 1.09 7.51 -52.49 -0.39 0.70 16 33 H 0.09 0.35 4.63 -51.93 -0.24 0.11 16 34 H 0.07 0.25 6.11 -51.93 -0.32 -0.07 16 35 H 0.07 0.22 6.70 -51.92 -0.35 -0.12 16 36 H 0.06 0.27 6.58 -51.93 -0.34 -0.07 16 37 H 0.09 0.35 4.35 -51.93 -0.23 0.12 16 38 H 0.07 0.32 6.23 -51.93 -0.32 -0.01 16 39 H 0.12 1.36 7.29 -51.93 -0.38 0.98 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 0.71 6.96 -51.93 -0.36 0.34 16 42 H 0.11 1.38 7.50 -51.92 -0.39 0.99 16 43 H 0.40 4.43 8.71 -40.82 -0.36 4.07 16 44 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 45 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 46 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.09 0.77 6.66 -51.93 -0.35 0.42 16 48 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 395.35 15.07 5.96 5.96 Total: -1.00 -36.73 395.35 -9.16 -45.89 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.23 Total: 1.05 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -0.74 Total: -4.95 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: -0.08 Total: -41.32 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: 0.17 Total: -19.35 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.73 -9.16 -45.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718834617.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.047 kcal (2) G-P(sol) polarization free energy of solvation -36.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.09 seconds